RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZMYND15Q9H091 742 aa23.25■■□□□ 1.31
CCDC88B-202ENST00000356786 MAPK8IP2Q13387 824 aaPredicted RBP23.24■■□□□ 1.31
CCDC88B-202ENST00000356786 TSPYL1Q9H0U9 437 aa23.24■■□□□ 1.31
CCDC88B-202ENST00000356786 ZNF396Q96N95 335 aaPredicted RBP23.24■■□□□ 1.31
CCDC88B-202ENST00000356786 SERPINC1P01008 464 aa23.23■■□□□ 1.31
CCDC88B-202ENST00000356786 ATP2B1P20020 1258 aa23.23■■□□□ 1.31
CCDC88B-202ENST00000356786 PTPN23Q9H3S7 1636 aa23.23■■□□□ 1.31
CCDC88B-202ENST00000356786 AIMP1Q12904 312 aaKnown RBP23.23■■□□□ 1.31
CCDC88B-202ENST00000356786 FAM177A1Q8N128 213 aaPredicted RBP23.23■■□□□ 1.31
CCDC88B-202ENST00000356786 WWC1Q8IX03 1113 aa23.23■■□□□ 1.31
CCDC88B-202ENST00000356786 TNPO1Q92973 898 aaKnown RBP23.22■■□□□ 1.31
CCDC88B-202ENST00000356786 NUP62CLQ9H1M0 184 aa23.22■■□□□ 1.31
CCDC88B-202ENST00000356786 ME1P48163 572 aa23.21■■□□□ 1.31
CCDC88B-202ENST00000356786 SLC4A2P04920 1241 aa23.21■■□□□ 1.31
CCDC88B-202ENST00000356786 BRPF1P55201 1214 aaPredicted RBP23.21■■□□□ 1.31
CCDC88B-202ENST00000356786 CCDC30Q5VVM6 783 aa23.21■■□□□ 1.31
CCDC88B-202ENST00000356786 RIC3Q7Z5B4 369 aa23.21■■□□□ 1.31
CCDC88B-202ENST00000356786 LRRCC1Q9C099 1032 aa23.21■■□□□ 1.31
CCDC88B-202ENST00000356786 KDM4AO75164 1064 aa23.21■■□□□ 1.31
CCDC88B-202ENST00000356786 STK3Q13188 491 aa23.21■■□□□ 1.31
CCDC88B-202ENST00000356786 ABCC5O15440 1437 aa23.21■■□□□ 1.31
CCDC88B-202ENST00000356786 FILIP1LQ4L180 1135 aa23.2■■□□□ 1.3
CCDC88B-202ENST00000356786 DHX8Q14562 1220 aaKnown RBP23.2■■□□□ 1.3
CCDC88B-202ENST00000356786 SSFA2P28290 1259 aa23.2■■□□□ 1.3
CCDC88B-202ENST00000356786 TMEM57Q8N5G2 664 aa23.19■■□□□ 1.3
CCDC88B-202ENST00000356786 CAMSAP2Q08AD1 1489 aa23.19■■□□□ 1.3
CCDC88B-202ENST00000356786 HIP1O00291 1037 aa23.19■■□□□ 1.3
CCDC88B-202ENST00000356786 RRP12Q5JTH9 1297 aaKnown RBP23.19■■□□□ 1.3
CCDC88B-202ENST00000356786 OFD1O75665 1012 aa23.19■■□□□ 1.3
CCDC88B-202ENST00000356786 SMARCE1Q969G3 411 aa23.19■■□□□ 1.3
CCDC88B-202ENST00000356786 DCTN1Q14203 1278 aa23.18■■□□□ 1.3
CCDC88B-202ENST00000356786 SPATA32Q96LK8 384 aa23.18■■□□□ 1.3
CCDC88B-202ENST00000356786 CCDC191Q8NCU4 936 aa23.18■■□□□ 1.3
CCDC88B-202ENST00000356786 TAF3Q5VWG9 929 aa23.18■■□□□ 1.3
CCDC88B-202ENST00000356786 UBXN4Q92575 508 aa23.17■■□□□ 1.3
CCDC88B-202ENST00000356786 DHX16O60231 1041 aaKnown RBP23.16■■□□□ 1.3
CCDC88B-202ENST00000356786 ANKRD1Q15327 319 aa23.16■■□□□ 1.3
CCDC88B-202ENST00000356786 DNAJC2Q99543 621 aaKnown RBP23.16■■□□□ 1.3
CCDC88B-202ENST00000356786 TMX4Q9H1E5 349 aaPredicted RBP23.16■■□□□ 1.3
CCDC88B-202ENST00000356786 CALRP27797 417 aaKnown RBP23.15■■□□□ 1.3
CCDC88B-202ENST00000356786 CEP57L1Q8IYX8 460 aa23.15■■□□□ 1.3
CCDC88B-202ENST00000356786 ERLIN1O75477 346 aa23.15■■□□□ 1.3
CCDC88B-202ENST00000356786 MAP3K11Q16584 847 aa23.15■■□□□ 1.3
CCDC88B-202ENST00000356786 MAP4K4O95819 1239 aaPredicted RBP23.14■■□□□ 1.3
CCDC88B-202ENST00000356786 CLCN1P35523 988 aa23.14■■□□□ 1.3
CCDC88B-202ENST00000356786 EIF3JO75822 258 aaKnown RBP23.14■■□□□ 1.3
CCDC88B-202ENST00000356786 UPF3BQ9BZI7 483 aaKnown RBP23.14■■□□□ 1.29
CCDC88B-202ENST00000356786 ZHX1Q9UKY1 873 aaPredicted RBP23.14■■□□□ 1.29
CCDC88B-202ENST00000356786 CCDC141Q6ZP82 1450 aa23.14■■□□□ 1.29
CCDC88B-202ENST00000356786 JMYQ8N9B5 988 aa23.14■■□□□ 1.29
CCDC88B-202ENST00000356786 RAPGEF3O95398 923 aa23.13■■□□□ 1.29
CCDC88B-202ENST00000356786 CCT4P50991 539 aaKnown RBP23.13■■□□□ 1.29
CCDC88B-202ENST00000356786 RARSP54136 660 aaKnown RBP23.13■■□□□ 1.29
CCDC88B-202ENST00000356786 G3V3G9 751 aa23.13■■□□□ 1.29
CCDC88B-202ENST00000356786 DCAF8Q5TAQ9 597 aa23.13■■□□□ 1.29
CCDC88B-202ENST00000356786 XBP1P17861 261 aa23.13■■□□□ 1.29
CCDC88B-202ENST00000356786 USP25Q9UHP3 1055 aa23.13■■□□□ 1.29
CCDC88B-202ENST00000356786 BLOC1S2Q6QNY1 142 aa23.12■■□□□ 1.29
CCDC88B-202ENST00000356786 ERBINQ96RT1 1412 aa23.12■■□□□ 1.29
CCDC88B-202ENST00000356786 AMOTL1Q8IY63 956 aa23.12■■□□□ 1.29
CCDC88B-202ENST00000356786 JAKMIP1Q96N16 626 aaKnown RBP23.12■■□□□ 1.29
CCDC88B-202ENST00000356786 XRCC6P12956 609 aaKnown RBP eCLIP23.11■■□□□ 1.296e-6■■■■■ 27.6
CCDC88B-202ENST00000356786 PTPN14Q15678 1187 aa23.11■■□□□ 1.29
CCDC88B-202ENST00000356786 PPFIBP1Q86W92 1011 aa23.11■■□□□ 1.29
CCDC88B-202ENST00000356786 RPAP2Q8IXW5 612 aaPredicted RBP23.11■■□□□ 1.29
CCDC88B-202ENST00000356786 BRMS1Q9HCU9 246 aa23.11■■□□□ 1.29
CCDC88B-202ENST00000356786 FERMT3Q86UX7 667 aa23.11■■□□□ 1.29
CCDC88B-202ENST00000356786 SRCIN1Q9C0H9 1055 aa23.11■■□□□ 1.29
CCDC88B-202ENST00000356786 PDRG1Q9NUG6 133 aa23.11■■□□□ 1.29
CCDC88B-202ENST00000356786 ZSCAN31Q96LW9 406 aaPredicted RBP23.11■■□□□ 1.29
CCDC88B-202ENST00000356786 HSP90AB3PQ58FF7 597 aa23.1■■□□□ 1.29
CCDC88B-202ENST00000356786 RAD21O60216 631 aa23.1■■□□□ 1.29
CCDC88B-202ENST00000356786 CAMK4Q16566 473 aa23.1■■□□□ 1.29
CCDC88B-202ENST00000356786 TMCO3Q6UWJ1 677 aa23.1■■□□□ 1.29
CCDC88B-202ENST00000356786 ERC1Q8IUD2 1116 aa23.1■■□□□ 1.29
CCDC88B-202ENST00000356786 CFAP45Q9UL16 551 aa23.1■■□□□ 1.29
CCDC88B-202ENST00000356786 PPP6R1Q9UPN7 881 aa23.1■■□□□ 1.29
CCDC88B-202ENST00000356786 KIAA0754O94854 1291 aa23.1■■□□□ 1.29
CCDC88B-202ENST00000356786 CGNQ9P2M7 1197 aaKnown RBP23.1■■□□□ 1.29
CCDC88B-202ENST00000356786 ANKRD30BQ9BXX2 1392 aa23.09■■□□□ 1.29
CCDC88B-202ENST00000356786 ZNF428Q96B54 188 aa23.09■■□□□ 1.29
CCDC88B-202ENST00000356786 PRM3Q9NNZ6 103 aa23.09■■□□□ 1.29
CCDC88B-202ENST00000356786 IL1RAPL2Q9NP60 686 aa23.09■■□□□ 1.29
CCDC88B-202ENST00000356786 KIF14Q15058 1648 aa23.09■■□□□ 1.29
CCDC88B-202ENST00000356786 GAS2L2Q8NHY3 880 aa23.08■■□□□ 1.29
CCDC88B-202ENST00000356786 CCDC183Q5T5S1 534 aa23.08■■□□□ 1.29
CCDC88B-202ENST00000356786 VPS37DQ86XT2 251 aa23.08■■□□□ 1.29
CCDC88B-202ENST00000356786 PANK2Q9BZ23 570 aa23.08■■□□□ 1.29
CCDC88B-202ENST00000356786 CWC27Q6UX04 472 aaKnown RBP23.08■■□□□ 1.29
CCDC88B-202ENST00000356786 NCOA1Q15788 1441 aa23.08■■□□□ 1.28
CCDC88B-202ENST00000356786 TBC1D32Q96NH3 1257 aa23.08■■□□□ 1.28
CCDC88B-202ENST00000356786 THOC2Q8NI27 1593 aaKnown RBP23.07■■□□□ 1.28
CCDC88B-202ENST00000356786 MCM5P33992 734 aa23.07■■□□□ 1.28
CCDC88B-202ENST00000356786 HDGFL1Q5TGJ6 251 aa23.07■■□□□ 1.28
CCDC88B-202ENST00000356786 SSH1Q8WYL5 1049 aa23.07■■□□□ 1.28
CCDC88B-202ENST00000356786 NOL10Q9BSC4 688 aaKnown RBP23.07■■□□□ 1.28
CCDC88B-202ENST00000356786 CBFA2T2O43439 604 aa23.06■■□□□ 1.28
CCDC88B-202ENST00000356786 CCDC102AQ96A19 550 aa23.06■■□□□ 1.28
CCDC88B-202ENST00000356786 DUSP27Q5VZP5 1158 aa23.06■■□□□ 1.28
CCDC88B-202ENST00000356786 SULT6B1Q6IMI4 303 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms