RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ZNF692Q9BU19 519 aaPredicted RBP27.71■■■□□ 2.03
SHMT1-202ENST00000352886 DLG5Q8TDM6 1919 aa27.7■■■□□ 2.03
SHMT1-202ENST00000352886 HDAC1Q13547 482 aaPredicted RBP27.69■■■□□ 2.02
SHMT1-202ENST00000352886 CALD1Q05682 793 aaKnown RBP27.69■■■□□ 2.02
SHMT1-202ENST00000352886 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.68■■■□□ 2.02
SHMT1-202ENST00000352886 ZNF428Q96B54 188 aa27.67■■■□□ 2.02
SHMT1-202ENST00000352886 ZBTB40Q9NUA8 1239 aa27.66■■■□□ 2.02
SHMT1-202ENST00000352886 LTKP29376 864 aa27.66■■■□□ 2.02
SHMT1-202ENST00000352886 GNAI1P63096 354 aa27.65■■■□□ 2.02
SHMT1-202ENST00000352886 IFT57Q9NWB7 429 aa27.65■■■□□ 2.02
SHMT1-202ENST00000352886 PLEKHG1Q9ULL1 1385 aa27.65■■■□□ 2.02
SHMT1-202ENST00000352886 BRPF1P55201 1214 aaPredicted RBP27.63■■■□□ 2.01
SHMT1-202ENST00000352886 NRKQ7Z2Y5 1582 aa27.63■■■□□ 2.01
SHMT1-202ENST00000352886 TOPAZ1Q8N9V7 1692 aa27.63■■■□□ 2.01
SHMT1-202ENST00000352886 VAMP4O75379 141 aa27.63■■■□□ 2.01
SHMT1-202ENST00000352886 NUTM2FA1L443 756 aa27.62■■■□□ 2.01
SHMT1-202ENST00000352886 TSPYL6Q8N831 410 aa27.62■■■□□ 2.01
SHMT1-202ENST00000352886 MBIPQ9NS73 344 aa27.62■■■□□ 2.01
SHMT1-202ENST00000352886 ZNF853P0CG23 659 aa27.61■■■□□ 2.01
SHMT1-202ENST00000352886 ACEP12821 1306 aa27.61■■■□□ 2.01
SHMT1-202ENST00000352886 LMOD3Q0VAK6 560 aa27.61■■■□□ 2.01
SHMT1-202ENST00000352886 TTC21BQ7Z4L5 1316 aa27.6■■■□□ 2.01
SHMT1-202ENST00000352886 CEBPAP49715 358 aaPredicted RBP27.6■■■□□ 2.01
SHMT1-202ENST00000352886 SMC5Q8IY18 1101 aa27.6■■■□□ 2.01
SHMT1-202ENST00000352886 UPF2Q9HAU5 1272 aaKnown RBP27.6■■■□□ 2.01
SHMT1-202ENST00000352886 ELL2O00472 640 aaPredicted RBP27.59■■■□□ 2.01
SHMT1-202ENST00000352886 PRKCSHP14314 528 aaPredicted RBP27.59■■■□□ 2.01
SHMT1-202ENST00000352886 NFKBIBQ15653 356 aa27.59■■■□□ 2.01
SHMT1-202ENST00000352886 MRPL50Q8N5N7 158 aaKnown RBP27.59■■■□□ 2.01
SHMT1-202ENST00000352886 SLC26A8Q96RN1 970 aa27.59■■■□□ 2.01
SHMT1-202ENST00000352886 FAM83GA6ND36 823 aa27.58■■■□□ 2.01
SHMT1-202ENST00000352886 CFAP44Q96MT7 982 aa27.58■■■□□ 2.01
SHMT1-202ENST00000352886 OVOS2A0A0J9YW53 1432 aa27.56■■■□□ 2
SHMT1-202ENST00000352886 OVOS2Q6IE36 1432 aa27.56■■■□□ 2
SHMT1-202ENST00000352886 PTPRUQ92729 1446 aa27.56■■■□□ 2
SHMT1-202ENST00000352886 PLEKHG3A1L390 1219 aa27.56■■■□□ 2
SHMT1-202ENST00000352886 EIF4A2Q14240 407 aaKnown RBP27.56■■■□□ 2
SHMT1-202ENST00000352886 USP6P35125 1406 aa27.55■■■□□ 2
SHMT1-202ENST00000352886 TWISTNBQ3B726 338 aaPredicted RBP27.55■■■□□ 2
SHMT1-202ENST00000352886 ARHGAP45Q92619 1136 aa27.55■■■□□ 2
SHMT1-202ENST00000352886 TBC1D32Q96NH3 1257 aa27.55■■■□□ 2
SHMT1-202ENST00000352886 PTCH1Q13635 1447 aa27.55■■■□□ 2
SHMT1-202ENST00000352886 DCTN1Q14203 1278 aa27.54■■■□□ 2
SHMT1-202ENST00000352886 EID1Q9Y6B2 187 aa27.54■■■□□ 2
SHMT1-202ENST00000352886 AEBP1Q8IUX7 1158 aa27.53■■■□□ 2
SHMT1-202ENST00000352886 NALCNQ8IZF0 1738 aa27.53■■■□□ 2
SHMT1-202ENST00000352886 SULT6B1Q6IMI4 303 aa27.52■■■□□ 2
SHMT1-202ENST00000352886 C8orf58Q8NAV2 365 aa27.52■■■□□ 2
SHMT1-202ENST00000352886 BECN1Q14457 450 aa27.52■■■□□ 2
SHMT1-202ENST00000352886 PIK3R4Q99570 1358 aa27.51■■□□□ 1.99
SHMT1-202ENST00000352886 ZBTB7BO15156 539 aaPredicted RBP27.51■■□□□ 1.99
SHMT1-202ENST00000352886 PEAK1Q9H792 1746 aa27.5■■□□□ 1.99
SHMT1-202ENST00000352886 PLPPR3Q6T4P5 718 aa27.49■■□□□ 1.99
SHMT1-202ENST00000352886 AMOTL2Q9Y2J4 779 aa27.49■■□□□ 1.99
SHMT1-202ENST00000352886 NUCB1Q02818 461 aa27.48■■□□□ 1.99
SHMT1-202ENST00000352886 SLIT1O75093 1534 aa27.48■■□□□ 1.99
SHMT1-202ENST00000352886 CHMP4BQ9H444 224 aaKnown RBP27.48■■□□□ 1.99
SHMT1-202ENST00000352886 ABCC4O15439 1325 aa27.47■■□□□ 1.99
SHMT1-202ENST00000352886 HSP90AB2PQ58FF8 381 aa27.47■■□□□ 1.99
SHMT1-202ENST00000352886 SOX12O15370 315 aa27.46■■□□□ 1.99
SHMT1-202ENST00000352886 ARHGAP23Q9P227 1491 aa27.46■■□□□ 1.99
SHMT1-202ENST00000352886 USP31Q70CQ4 1352 aa27.46■■□□□ 1.99
SHMT1-202ENST00000352886 LNPKQ9C0E8 428 aa27.46■■□□□ 1.99
SHMT1-202ENST00000352886 C1orf115Q9H7X2 142 aa27.46■■□□□ 1.99
SHMT1-202ENST00000352886 SSH2Q76I76 1423 aa27.45■■□□□ 1.98
SHMT1-202ENST00000352886 RGPD1P0DJD0 1748 aa27.45■■□□□ 1.98
SHMT1-202ENST00000352886 RGPD8O14715 1765 aaPredicted RBP27.44■■□□□ 1.98
SHMT1-202ENST00000352886 TBX22Q9Y458 520 aa27.43■■□□□ 1.98
SHMT1-202ENST00000352886 FER1L4A9Z1Z3 1794 aa27.43■■□□□ 1.98
SHMT1-202ENST00000352886 CHD1LQ86WJ1 897 aa27.43■■□□□ 1.98
SHMT1-202ENST00000352886 MFAP1P55081 439 aaKnown RBP27.42■■□□□ 1.98
SHMT1-202ENST00000352886 API5Q9BZZ5 524 aaKnown RBP27.42■■□□□ 1.98
SHMT1-202ENST00000352886 FRAT2O75474 233 aaPredicted RBP27.41■■□□□ 1.98
SHMT1-202ENST00000352886 FMN2Q9NZ56 1722 aa27.41■■□□□ 1.98
SHMT1-202ENST00000352886 MCM10Q7L590 875 aa27.4■■□□□ 1.98
SHMT1-202ENST00000352886 TTC21AQ8NDW8 1320 aa27.4■■□□□ 1.98
SHMT1-202ENST00000352886 DIP2AQ14689 1571 aa27.4■■□□□ 1.98
SHMT1-202ENST00000352886 GCC1Q96CN9 775 aa27.39■■□□□ 1.98
SHMT1-202ENST00000352886 C22orf23Q9BZE7 217 aa27.39■■□□□ 1.98
SHMT1-202ENST00000352886 TBC1D2Q9BYX2 928 aa27.39■■□□□ 1.97
SHMT1-202ENST00000352886 SLKQ9H2G2 1235 aaPredicted RBP27.38■■□□□ 1.97
SHMT1-202ENST00000352886 MAP3K19Q56UN5 1328 aa27.38■■□□□ 1.97
SHMT1-202ENST00000352886 KRT24Q2M2I5 525 aa27.37■■□□□ 1.97
SHMT1-202ENST00000352886 ANKRD45Q5TZF3 282 aa27.37■■□□□ 1.97
SHMT1-202ENST00000352886 NGDNQ8NEJ9 315 aaKnown RBP27.37■■□□□ 1.97
SHMT1-202ENST00000352886 CHL1O00533 1208 aa27.37■■□□□ 1.97
SHMT1-202ENST00000352886 SIRT2Q8IXJ6 389 aa27.37■■□□□ 1.97
SHMT1-202ENST00000352886 THEMISQ8N1K5 641 aaPredicted RBP27.37■■□□□ 1.97
SHMT1-202ENST00000352886 ARHGEF10O15013 1369 aa27.35■■□□□ 1.97
SHMT1-202ENST00000352886 GSE1Q14687 1217 aa27.35■■□□□ 1.97
SHMT1-202ENST00000352886 HAP1P54257 671 aaPredicted RBP27.33■■□□□ 1.97
SHMT1-202ENST00000352886 FLT4P35916 1363 aa27.33■■□□□ 1.97
SHMT1-202ENST00000352886 RIMS1Q86UR5 1692 aaKnown RBP27.33■■□□□ 1.97
SHMT1-202ENST00000352886 SBNO1A3KN83 1393 aa27.33■■□□□ 1.97
SHMT1-202ENST00000352886 PIK3C2AO00443 1686 aa27.32■■□□□ 1.96
SHMT1-202ENST00000352886 XRN1Q8IZH2 1706 aaKnown RBP27.32■■□□□ 1.96
SHMT1-202ENST00000352886 KIF24Q5T7B8 1368 aa27.32■■□□□ 1.96
SHMT1-202ENST00000352886 KIAA0232Q92628 1395 aa27.32■■□□□ 1.96
SHMT1-202ENST00000352886 ANTXR1Q9H6X2 564 aa27.31■■□□□ 1.96
SHMT1-202ENST00000352886 CRB1P82279 1406 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms