RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 CALRP27797 417 aaKnown RBP27.4■■□□□ 1.98
NPAS3-201ENST00000346562 MAP7D2Q96T17 732 aa27.4■■□□□ 1.98
NPAS3-201ENST00000346562 CDK19Q9BWU1 502 aa27.4■■□□□ 1.98
NPAS3-201ENST00000346562 ANKRD18AQ8IVF6 992 aa27.4■■□□□ 1.98
NPAS3-201ENST00000346562 CWC15Q9P013 229 aaKnown RBP27.39■■□□□ 1.98
NPAS3-201ENST00000346562 RNF214Q8ND24 703 aa27.38■■□□□ 1.97
NPAS3-201ENST00000346562 CDKL5O76039 1030 aa27.38■■□□□ 1.97
NPAS3-201ENST00000346562 PLEKHH2Q8IVE3 1493 aa27.38■■□□□ 1.97
NPAS3-201ENST00000346562 FMNL2Q96PY5 1086 aa27.38■■□□□ 1.97
NPAS3-201ENST00000346562 LRRC9Q6ZRR7 1453 aa27.38■■□□□ 1.97
NPAS3-201ENST00000346562 C1orf115Q9H7X2 142 aa27.38■■□□□ 1.97
NPAS3-201ENST00000346562 MPHOSPH10O00566 681 aaKnown RBP27.37■■□□□ 1.97
NPAS3-201ENST00000346562 ZHX3Q9H4I2 956 aa27.37■■□□□ 1.97
NPAS3-201ENST00000346562 SULT6B1Q6IMI4 303 aa27.37■■□□□ 1.97
NPAS3-201ENST00000346562 CAVIN1Q6NZI2 390 aaKnown RBP27.37■■□□□ 1.97
NPAS3-201ENST00000346562 HFM1A2PYH4 1435 aa27.37■■□□□ 1.97
NPAS3-201ENST00000346562 CASKIN1Q8WXD9 1431 aa27.37■■□□□ 1.97
NPAS3-201ENST00000346562 SIL1Q9H173 461 aa27.37■■□□□ 1.97
NPAS3-201ENST00000346562 PDZRN3Q9UPQ7 1066 aa27.37■■□□□ 1.97
NPAS3-201ENST00000346562 CEBPZQ03701 1054 aaKnown RBP27.36■■□□□ 1.97
NPAS3-201ENST00000346562 TANGO6Q9C0B7 1094 aa27.36■■□□□ 1.97
NPAS3-201ENST00000346562 SERPINC1P01008 464 aa27.36■■□□□ 1.97
NPAS3-201ENST00000346562 PPFIBP1Q86W92 1011 aa27.36■■□□□ 1.97
NPAS3-201ENST00000346562 NUP133Q8WUM0 1156 aa27.36■■□□□ 1.97
NPAS3-201ENST00000346562 DEF6Q9H4E7 631 aa27.36■■□□□ 1.97
NPAS3-201ENST00000346562 AQRO60306 1485 aaKnown RBP eCLIP27.35■■□□□ 1.97
NPAS3-201ENST00000346562 H0YHG0 523 aa27.35■■□□□ 1.97
NPAS3-201ENST00000346562 MYL6BP14649 208 aa27.35■■□□□ 1.97
NPAS3-201ENST00000346562 SKIDA1Q1XH10 827 aa27.35■■□□□ 1.97
NPAS3-201ENST00000346562 AFAP1Q8N556 730 aa27.35■■□□□ 1.97
NPAS3-201ENST00000346562 RTEL1-TNFRSF6BF6WH68 1400 aa27.34■■□□□ 1.97
NPAS3-201ENST00000346562 FIBPO43427 364 aa27.34■■□□□ 1.97
NPAS3-201ENST00000346562 CT47B1P0C2W7 299 aaPredicted RBP27.34■■□□□ 1.97
NPAS3-201ENST00000346562 PRPF40AO75400 957 aaKnown RBP27.34■■□□□ 1.97
NPAS3-201ENST00000346562 DESP17661 470 aa27.34■■□□□ 1.97
NPAS3-201ENST00000346562 STK11IPQ8N1F8 1099 aa27.34■■□□□ 1.97
NPAS3-201ENST00000346562 NEFHP12036 1026 aa27.33■■□□□ 1.97
NPAS3-201ENST00000346562 PDE3AQ14432 1141 aa27.33■■□□□ 1.97
NPAS3-201ENST00000346562 CTNNA3Q9UI47 895 aa27.33■■□□□ 1.96
NPAS3-201ENST00000346562 STK3Q13188 491 aa27.32■■□□□ 1.96
NPAS3-201ENST00000346562 BMP2KQ9NSY1 1161 aaPredicted RBP27.32■■□□□ 1.96
NPAS3-201ENST00000346562 GRIN2BQ13224 1484 aa27.32■■□□□ 1.96
NPAS3-201ENST00000346562 ZSCAN29Q8IWY8 852 aaPredicted RBP27.32■■□□□ 1.96
NPAS3-201ENST00000346562 ANKLE2Q86XL3 938 aa27.32■■□□□ 1.96
NPAS3-201ENST00000346562 VSIG10Q8N0Z9 540 aa27.32■■□□□ 1.96
NPAS3-201ENST00000346562 POGZQ7Z3K3 1410 aa27.31■■□□□ 1.96
NPAS3-201ENST00000346562 GOLGA6L10A6NI86 522 aa27.31■■□□□ 1.96
NPAS3-201ENST00000346562 CBFA2T2O43439 604 aa27.31■■□□□ 1.96
NPAS3-201ENST00000346562 TRAK2O60296 914 aa27.31■■□□□ 1.96
NPAS3-201ENST00000346562 NFKBIBQ15653 356 aa27.31■■□□□ 1.96
NPAS3-201ENST00000346562 SEPT7Q16181 437 aaKnown RBP27.31■■□□□ 1.96
NPAS3-201ENST00000346562 UBAC1Q9BSL1 405 aa27.31■■□□□ 1.96
NPAS3-201ENST00000346562 BCL11BQ9C0K0 894 aaPredicted RBP27.31■■□□□ 1.96
NPAS3-201ENST00000346562 TDO2P48775 406 aa27.3■■□□□ 1.96
NPAS3-201ENST00000346562 CCDC181Q5TID7 509 aa27.3■■□□□ 1.96
NPAS3-201ENST00000346562 MTERF4Q7Z6M4 381 aaKnown RBP27.3■■□□□ 1.96
NPAS3-201ENST00000346562 CCDC192P0DO97 292 aa27.3■■□□□ 1.96
NPAS3-201ENST00000346562 ME1P48163 572 aa27.3■■□□□ 1.96
NPAS3-201ENST00000346562 IGHMBP2P38935 993 aaKnown RBP27.29■■□□□ 1.96
NPAS3-201ENST00000346562 CABP1Q9NZU7 370 aa27.29■■□□□ 1.96
NPAS3-201ENST00000346562 FKBP4Q02790 459 aaKnown RBP eCLIP27.29■■□□□ 1.96
NPAS3-201ENST00000346562 AACSQ86V21 672 aa27.29■■□□□ 1.96
NPAS3-201ENST00000346562 RAI14Q9P0K7 980 aa27.29■■□□□ 1.96
NPAS3-201ENST00000346562 WDR33Q9C0J8 1336 aaKnown RBP27.29■■□□□ 1.96
NPAS3-201ENST00000346562 BTBD11A6QL63 1104 aa27.29■■□□□ 1.96
NPAS3-201ENST00000346562 PRDM11Q9NQV5 511 aa27.29■■□□□ 1.96
NPAS3-201ENST00000346562 ZNF76P36508 570 aa27.28■■□□□ 1.96
NPAS3-201ENST00000346562 WASF1Q92558 559 aa27.28■■□□□ 1.96
NPAS3-201ENST00000346562 PRG4Q92954 1404 aaPredicted RBP27.28■■□□□ 1.96
NPAS3-201ENST00000346562 TNMDQ9H2S6 317 aa27.28■■□□□ 1.96
NPAS3-201ENST00000346562 KIF21BO75037 1637 aa27.27■■□□□ 1.96
NPAS3-201ENST00000346562 TMOD2Q9NZR1 351 aa27.27■■□□□ 1.96
NPAS3-201ENST00000346562 AXDND1Q5T1B0 1012 aaPredicted RBP27.27■■□□□ 1.96
NPAS3-201ENST00000346562 TRIM21P19474 475 aaKnown RBP27.27■■□□□ 1.96
NPAS3-201ENST00000346562 TSR2Q969E8 191 aaKnown RBP27.27■■□□□ 1.96
NPAS3-201ENST00000346562 SLC52A1Q9NWF4 448 aa27.27■■□□□ 1.96
NPAS3-201ENST00000346562 MATR3P43243 847 aaKnown RBP eCLIP27.27■■□□□ 1.96
NPAS3-201ENST00000346562 WDR63Q8IWG1 891 aa27.26■■□□□ 1.96
NPAS3-201ENST00000346562 CEP126Q9P2H0 1117 aa27.26■■□□□ 1.95
NPAS3-201ENST00000346562 KRT85P78386 507 aa27.26■■□□□ 1.95
NPAS3-201ENST00000346562 MAP4K4O95819 1239 aaPredicted RBP27.25■■□□□ 1.95
NPAS3-201ENST00000346562 ZSCAN31Q96LW9 406 aaPredicted RBP27.24■■□□□ 1.95
NPAS3-201ENST00000346562 KRT32Q14532 448 aa27.24■■□□□ 1.95
NPAS3-201ENST00000346562 NEBLO76041 1014 aa27.23■■□□□ 1.95
NPAS3-201ENST00000346562 RPGRIP1LQ68CZ1 1315 aa27.23■■□□□ 1.95
NPAS3-201ENST00000346562 ANKRD62A6NC57 917 aa27.23■■□□□ 1.95
NPAS3-201ENST00000346562 PDRG1Q9NUG6 133 aa27.23■■□□□ 1.95
NPAS3-201ENST00000346562 BLOC1S2Q6QNY1 142 aa27.22■■□□□ 1.95
NPAS3-201ENST00000346562 LRP2BPQ9P2M1 347 aa27.22■■□□□ 1.95
NPAS3-201ENST00000346562 DNAI2Q9GZS0 605 aa27.22■■□□□ 1.95
NPAS3-201ENST00000346562 SEPT11Q9NVA2 429 aaKnown RBP27.22■■□□□ 1.95
NPAS3-201ENST00000346562 C9orf84Q5VXU9 1444 aa27.22■■□□□ 1.95
NPAS3-201ENST00000346562 LARP1BQ659C4 914 aaKnown RBP27.22■■□□□ 1.95
NPAS3-201ENST00000346562 ATAD2Q6PL18 1390 aa27.22■■□□□ 1.95
NPAS3-201ENST00000346562 SSBP05455 408 aaKnown RBP eCLIP27.21■■□□□ 1.95
NPAS3-201ENST00000346562 LEKR1Q6ZMV7 388 aa27.21■■□□□ 1.95
NPAS3-201ENST00000346562 ZNF287Q9HBT7 754 aa27.21■■□□□ 1.95
NPAS3-201ENST00000346562 STARD3NLO95772 234 aa27.21■■□□□ 1.95
NPAS3-201ENST00000346562 IQCEQ6IPM2 695 aa27.21■■□□□ 1.95
NPAS3-201ENST00000346562 CEP57L1Q8IYX8 460 aa27.21■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms