RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 TRIM35Q9UPQ4 493 aa16.98■□□□□ 0.31
SYNE3-201ENST00000334258 CAMSAP1Q5T5Y3 1602 aa16.98■□□□□ 0.31
SYNE3-201ENST00000334258 GGNBP2Q9H3C7 697 aa16.98■□□□□ 0.31
SYNE3-201ENST00000334258 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.97■□□□□ 0.31
SYNE3-201ENST00000334258 PPP1R9BQ96SB3 815 aa16.97■□□□□ 0.31
SYNE3-201ENST00000334258 OFD1O75665 1012 aa16.97■□□□□ 0.31
SYNE3-201ENST00000334258 ARID3AQ99856 593 aa16.97■□□□□ 0.31
SYNE3-201ENST00000334258 RBM33Q96EV2 1170 aaKnown RBP16.96■□□□□ 0.31
SYNE3-201ENST00000334258 LMTK2Q8IWU2 1503 aa16.95■□□□□ 0.3
SYNE3-201ENST00000334258 ELL2O00472 640 aaPredicted RBP16.95■□□□□ 0.3
SYNE3-201ENST00000334258 BBXQ8WY36 941 aaPredicted RBP16.95■□□□□ 0.3
SYNE3-201ENST00000334258 ADGRB3O60242 1522 aa16.95■□□□□ 0.3
SYNE3-201ENST00000334258 GCC1Q96CN9 775 aa16.94■□□□□ 0.3
SYNE3-201ENST00000334258 EVC2Q86UK5 1308 aa16.94■□□□□ 0.3
SYNE3-201ENST00000334258 CHMP4BQ9H444 224 aaKnown RBP16.94■□□□□ 0.3
SYNE3-201ENST00000334258 SBNO2Q9Y2G9 1366 aa16.94■□□□□ 0.3
SYNE3-201ENST00000334258 RPGRIP1LQ68CZ1 1315 aa16.94■□□□□ 0.3
SYNE3-201ENST00000334258 GLI2P10070 1586 aa16.93■□□□□ 0.3
SYNE3-201ENST00000334258 CDC45O75419 566 aa16.93■□□□□ 0.3
SYNE3-201ENST00000334258 CABP1Q9NZU7 370 aa16.93■□□□□ 0.3
SYNE3-201ENST00000334258 NCBP3Q53F19 620 aaKnown RBP16.93■□□□□ 0.3
SYNE3-201ENST00000334258 XPCQ01831 940 aaPredicted RBP16.92■□□□□ 0.3
SYNE3-201ENST00000334258 MYO5BQ9ULV0 1848 aa16.92■□□□□ 0.3
SYNE3-201ENST00000334258 SOX12O15370 315 aa16.92■□□□□ 0.3
SYNE3-201ENST00000334258 NUCB2P80303 420 aa16.92■□□□□ 0.3
SYNE3-201ENST00000334258 PLEKHF1Q96S99 279 aa16.92■□□□□ 0.3
SYNE3-201ENST00000334258 ABCC11Q96J66 1382 aa16.92■□□□□ 0.3
SYNE3-201ENST00000334258 PRPF40AO75400 957 aaKnown RBP16.92■□□□□ 0.3
SYNE3-201ENST00000334258 ZSCAN23Q3MJ62 389 aa16.91■□□□□ 0.3
SYNE3-201ENST00000334258 CDK19Q9BWU1 502 aa16.91■□□□□ 0.3
SYNE3-201ENST00000334258 SHPRHQ149N8 1683 aa16.91■□□□□ 0.3
SYNE3-201ENST00000334258 MYOM2P54296 1465 aa16.91■□□□□ 0.3
SYNE3-201ENST00000334258 CLTCQ00610 1675 aaKnown RBP16.9■□□□□ 0.3
SYNE3-201ENST00000334258 ZBTB7BO15156 539 aaPredicted RBP16.9■□□□□ 0.3
SYNE3-201ENST00000334258 RABEP1Q15276 862 aa16.9■□□□□ 0.3
SYNE3-201ENST00000334258 FOXD4L5Q5VV16 416 aaPredicted RBP16.9■□□□□ 0.3
SYNE3-201ENST00000334258 PAXIP1Q6ZW49 1069 aaPredicted RBP16.9■□□□□ 0.3
SYNE3-201ENST00000334258 FOXD4L4Q8WXT5 416 aaPredicted RBP16.9■□□□□ 0.3
SYNE3-201ENST00000334258 RBSNQ9H1K0 784 aa16.9■□□□□ 0.3
SYNE3-201ENST00000334258 KIF13AQ9H1H9 1805 aa16.9■□□□□ 0.3
SYNE3-201ENST00000334258 DIAPH1O60610 1272 aaKnown RBP16.89■□□□□ 0.29
SYNE3-201ENST00000334258 ALDH1L2Q3SY69 923 aa16.89■□□□□ 0.29
SYNE3-201ENST00000334258 IL16Q14005 1332 aa16.89■□□□□ 0.29
SYNE3-201ENST00000334258 ZBTB7CA1YPR0 619 aa16.89■□□□□ 0.29
SYNE3-201ENST00000334258 PRIM1P49642 420 aaKnown RBP16.89■□□□□ 0.29
SYNE3-201ENST00000334258 NAP1L2Q9ULW6 460 aaPredicted RBP16.89■□□□□ 0.29
SYNE3-201ENST00000334258 LTKP29376 864 aa16.88■□□□□ 0.29
SYNE3-201ENST00000334258 RBM27Q9P2N5 1060 aaKnown RBP16.88■□□□□ 0.29
SYNE3-201ENST00000334258 APBB1O00213 710 aa16.88■□□□□ 0.29
SYNE3-201ENST00000334258 ZNF445P59923 1031 aa16.88■□□□□ 0.29
SYNE3-201ENST00000334258 PKP1Q13835 747 aa16.88■□□□□ 0.29
SYNE3-201ENST00000334258 PIK3C2BO00750 1634 aa16.88■□□□□ 0.29
SYNE3-201ENST00000334258 THUMPD2Q9BTF0 503 aaKnown RBP16.88■□□□□ 0.29
SYNE3-201ENST00000334258 UQCRHLA0A096LP55 91 aa16.87■□□□□ 0.29
SYNE3-201ENST00000334258 UQCRHP07919 91 aa16.87■□□□□ 0.29
SYNE3-201ENST00000334258 NEXMIFQ5QGS0 1516 aa16.87■□□□□ 0.29
SYNE3-201ENST00000334258 ANKRD36BQ8N2N9 1353 aa16.87■□□□□ 0.29
SYNE3-201ENST00000334258 PPIP5K1Q6PFW1 1433 aa16.86■□□□□ 0.29
SYNE3-201ENST00000334258 PTMAP06454 111 aaKnown RBP16.86■□□□□ 0.29
SYNE3-201ENST00000334258 LMBRD1Q9NUN5 540 aa16.86■□□□□ 0.29
SYNE3-201ENST00000334258 ZRANB1Q9UGI0 708 aa16.86■□□□□ 0.29
SYNE3-201ENST00000334258 NOL7Q9UMY1 257 aaKnown RBP16.86■□□□□ 0.29
SYNE3-201ENST00000334258 RNF214Q8ND24 703 aa16.86■□□□□ 0.29
SYNE3-201ENST00000334258 CLEC17AQ6ZS10 378 aa16.85■□□□□ 0.29
SYNE3-201ENST00000334258 ZHX1Q9UKY1 873 aaPredicted RBP16.85■□□□□ 0.29
SYNE3-201ENST00000334258 METP08581 1390 aa16.85■□□□□ 0.29
SYNE3-201ENST00000334258 IBTKQ9P2D0 1353 aaPredicted RBP16.85■□□□□ 0.29
SYNE3-201ENST00000334258 ARHGAP31Q2M1Z3 1444 aa16.85■□□□□ 0.29
SYNE3-201ENST00000334258 RIMS2Q9UQ26 1411 aa16.85■□□□□ 0.29
SYNE3-201ENST00000334258 NSD2O96028 1365 aa16.85■□□□□ 0.29
SYNE3-201ENST00000334258 PRKAR2BP31323 418 aa16.85■□□□□ 0.29
SYNE3-201ENST00000334258 ADGRB1O14514 1584 aa16.84■□□□□ 0.29
SYNE3-201ENST00000334258 ST18O60284 1047 aa16.84■□□□□ 0.29
SYNE3-201ENST00000334258 SIRT2Q8IXJ6 389 aa16.84■□□□□ 0.29
SYNE3-201ENST00000334258 MAP7D2Q96T17 732 aa16.84■□□□□ 0.29
SYNE3-201ENST00000334258 PPLO60437 1756 aa16.84■□□□□ 0.29
SYNE3-201ENST00000334258 HS1BP3Q53T59 392 aa16.84■□□□□ 0.29
SYNE3-201ENST00000334258 ZGPATQ8N5A5 531 aaKnown RBP16.84■□□□□ 0.29
SYNE3-201ENST00000334258 KIAA1210Q9ULL0 1709 aa16.84■□□□□ 0.29
SYNE3-201ENST00000334258 NRXN1Q9ULB1 1477 aa16.84■□□□□ 0.29
SYNE3-201ENST00000334258 PREX1Q8TCU6 1659 aa16.84■□□□□ 0.29
SYNE3-201ENST00000334258 SYCE3A1L190 88 aa16.83■□□□□ 0.29
SYNE3-201ENST00000334258 TSPYL6Q8N831 410 aa16.83■□□□□ 0.29
SYNE3-201ENST00000334258 CHAMP1Q96JM3 812 aa16.83■□□□□ 0.29
SYNE3-201ENST00000334258 YTHDC2Q9H6S0 1430 aaKnown RBP16.83■□□□□ 0.28
SYNE3-201ENST00000334258 GSPT1P15170 499 aaKnown RBP16.83■□□□□ 0.28
SYNE3-201ENST00000334258 HMOX1P09601 288 aa16.83■□□□□ 0.28
SYNE3-201ENST00000334258 TERF1P54274 439 aa16.83■□□□□ 0.28
SYNE3-201ENST00000334258 CASC1Q6TDU7 716 aa16.83■□□□□ 0.28
SYNE3-201ENST00000334258 TAF7LQ5H9L4 462 aa16.82■□□□□ 0.28
SYNE3-201ENST00000334258 DNTTIP2Q5QJE6 756 aaKnown RBP16.82■□□□□ 0.28
SYNE3-201ENST00000334258 C16orf71Q8IYS4 520 aaPredicted RBP16.82■□□□□ 0.28
SYNE3-201ENST00000334258 CSPP1Q1MSJ5 1256 aa16.82■□□□□ 0.28
SYNE3-201ENST00000334258 INTS3Q68E01 1043 aaKnown RBP16.82■□□□□ 0.28
SYNE3-201ENST00000334258 ZKSCAN5Q9Y2L8 839 aa16.82■□□□□ 0.28
SYNE3-201ENST00000334258 VAMP4O75379 141 aa16.81■□□□□ 0.28
SYNE3-201ENST00000334258 PLEKHM2Q8IWE5 1019 aa16.81■□□□□ 0.28
SYNE3-201ENST00000334258 KLHL34Q8N239 644 aa16.81■□□□□ 0.28
SYNE3-201ENST00000334258 MRPL50Q8N5N7 158 aaKnown RBP16.81■□□□□ 0.28
SYNE3-201ENST00000334258 CWC22Q9HCG8 908 aaKnown RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 167.3 ms