RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 UPF3BQ9BZI7 483 aaKnown RBP17.54■□□□□ 0.4
SCN3B-201ENST00000299333 KRT18P05783 430 aaKnown RBP17.53■□□□□ 0.4
SCN3B-201ENST00000299333 BCCIPQ9P287 314 aaKnown RBP eCLIP17.53■□□□□ 0.4
SCN3B-201ENST00000299333 EID1Q9Y6B2 187 aa17.53■□□□□ 0.4
SCN3B-201ENST00000299333 GOLGA6L10A0A0M3HER8 536 aa17.53■□□□□ 0.4
SCN3B-201ENST00000299333 GCC1Q96CN9 775 aa17.53■□□□□ 0.4
SCN3B-201ENST00000299333 MSH5O43196 834 aa17.52■□□□□ 0.4
SCN3B-201ENST00000299333 ARHGAP29Q52LW3 1261 aa17.52■□□□□ 0.39
SCN3B-201ENST00000299333 PPP4R3BQ5MIZ7 849 aa17.52■□□□□ 0.39
SCN3B-201ENST00000299333 TXLNBQ8N3L3 684 aa17.52■□□□□ 0.39
SCN3B-201ENST00000299333 CIZ1Q9ULV3 898 aaPredicted RBP17.52■□□□□ 0.39
SCN3B-201ENST00000299333 EPB41L2O43491 1005 aaKnown RBP17.51■□□□□ 0.39
SCN3B-201ENST00000299333 GBP3Q9H0R5 595 aa17.51■□□□□ 0.39
SCN3B-201ENST00000299333 SPDYE4A6NLX3 237 aa17.5■□□□□ 0.39
SCN3B-201ENST00000299333 BCAR3O75815 825 aa17.5■□□□□ 0.39
SCN3B-201ENST00000299333 MAP2K1Q02750 393 aaPredicted RBP17.5■□□□□ 0.39
SCN3B-201ENST00000299333 TDRD9Q8NDG6 1382 aaKnown RBP17.5■□□□□ 0.39
SCN3B-201ENST00000299333 STIM1Q13586 685 aa17.5■□□□□ 0.39
SCN3B-201ENST00000299333 CAMK4Q16566 473 aa17.5■□□□□ 0.39
SCN3B-201ENST00000299333 KRI1Q8N9T8 703 aaKnown RBP17.5■□□□□ 0.39
SCN3B-201ENST00000299333 HIP1O00291 1037 aa17.5■□□□□ 0.39
SCN3B-201ENST00000299333 RNF187Q5TA31 235 aaPredicted RBP17.5■□□□□ 0.39
SCN3B-201ENST00000299333 KIAA1328Q86T90 577 aa17.5■□□□□ 0.39
SCN3B-201ENST00000299333 CCDC148Q8NFR7 591 aa17.5■□□□□ 0.39
SCN3B-201ENST00000299333 UACAQ9BZF9 1416 aa17.49■□□□□ 0.39
SCN3B-201ENST00000299333 SSR1P43307 286 aaKnown RBP17.49■□□□□ 0.39
SCN3B-201ENST00000299333 GNAI3P08754 354 aa17.49■□□□□ 0.39
SCN3B-201ENST00000299333 BRD4O60885 1362 aaPredicted RBP17.49■□□□□ 0.39
SCN3B-201ENST00000299333 CFAP45Q9UL16 551 aa17.49■□□□□ 0.39
SCN3B-201ENST00000299333 URI1O94763 535 aaPredicted RBP17.48■□□□□ 0.39
SCN3B-201ENST00000299333 KIF18AQ8NI77 898 aa17.48■□□□□ 0.39
SCN3B-201ENST00000299333 EXOSC9Q06265 439 aaKnown RBP17.48■□□□□ 0.39
SCN3B-201ENST00000299333 MAP4K4O95819 1239 aaPredicted RBP17.48■□□□□ 0.39
SCN3B-201ENST00000299333 GBP2P32456 591 aaPredicted RBP17.48■□□□□ 0.39
SCN3B-201ENST00000299333 PDE3AQ14432 1141 aa17.48■□□□□ 0.39
SCN3B-201ENST00000299333 CFAP100Q494V2 611 aa17.48■□□□□ 0.39
SCN3B-201ENST00000299333 ANKRD1Q15327 319 aa17.48■□□□□ 0.39
SCN3B-201ENST00000299333 MAP3K11Q16584 847 aa17.48■□□□□ 0.39
SCN3B-201ENST00000299333 NOB1Q9ULX3 412 aaKnown RBP17.48■□□□□ 0.39
SCN3B-201ENST00000299333 KIF2AO00139 706 aaPredicted RBP17.47■□□□□ 0.39
SCN3B-201ENST00000299333 TCP11L2Q8N4U5 519 aa17.47■□□□□ 0.39
SCN3B-201ENST00000299333 SLC26A8Q96RN1 970 aa17.47■□□□□ 0.39
SCN3B-201ENST00000299333 DDX11Q96FC9 970 aa17.47■□□□□ 0.39
SCN3B-201ENST00000299333 CCDC113Q9H0I3 377 aa17.47■□□□□ 0.39
SCN3B-201ENST00000299333 ZHX3Q9H4I2 956 aa17.47■□□□□ 0.39
SCN3B-201ENST00000299333 SEPT11Q9NVA2 429 aaKnown RBP17.47■□□□□ 0.39
SCN3B-201ENST00000299333 SMTNL1A8MU46 457 aa17.47■□□□□ 0.39
SCN3B-201ENST00000299333 IKQ13123 557 aaPredicted RBP17.47■□□□□ 0.39
SCN3B-201ENST00000299333 NF2P35240 595 aa17.46■□□□□ 0.39
SCN3B-201ENST00000299333 CASQ1P31415 396 aa17.46■□□□□ 0.39
SCN3B-201ENST00000299333 PAF1Q8N7H5 531 aa17.46■□□□□ 0.39
SCN3B-201ENST00000299333 ZFP91Q96JP5 570 aaPredicted RBP17.46■□□□□ 0.39
SCN3B-201ENST00000299333 SMARCA4P51532 1647 aa17.46■□□□□ 0.39
SCN3B-201ENST00000299333 SFPQP23246 707 aaKnown RBP eCLIP17.46■□□□□ 0.39
SCN3B-201ENST00000299333 TDO2P48775 406 aa17.46■□□□□ 0.39
SCN3B-201ENST00000299333 TAF4BQ92750 862 aa17.46■□□□□ 0.39
SCN3B-201ENST00000299333 TBC1D2BQ9UPU7 963 aa17.46■□□□□ 0.39
SCN3B-201ENST00000299333 EVA1CP58658 441 aa17.45■□□□□ 0.38
SCN3B-201ENST00000299333 TMEM132AQ24JP5 1023 aa17.45■□□□□ 0.38
SCN3B-201ENST00000299333 CADPSQ9ULU8 1353 aa17.45■□□□□ 0.38
SCN3B-201ENST00000299333 WASHC2AQ641Q2 1341 aa17.44■□□□□ 0.38
SCN3B-201ENST00000299333 JAKMIP3Q5VZ66 844 aa17.44■□□□□ 0.38
SCN3B-201ENST00000299333 SYTL4Q96C24 671 aaPredicted RBP17.44■□□□□ 0.38
SCN3B-201ENST00000299333 C16orf45Q96MC5 204 aaPredicted RBP17.44■□□□□ 0.38
SCN3B-201ENST00000299333 VGFO15240 615 aaPredicted RBP17.44■□□□□ 0.38
SCN3B-201ENST00000299333 MAP9Q49MG5 647 aa17.44■□□□□ 0.38
SCN3B-201ENST00000299333 TIGD1Q96MW7 591 aa17.44■□□□□ 0.38
SCN3B-201ENST00000299333 GGNBP2Q9H3C7 697 aa17.44■□□□□ 0.38
SCN3B-201ENST00000299333 RUSC2Q8N2Y8 1516 aa17.44■□□□□ 0.38
SCN3B-201ENST00000299333 PDRG1Q9NUG6 133 aa17.43■□□□□ 0.38
SCN3B-201ENST00000299333 ZSCAN12O43309 604 aa17.43■□□□□ 0.38
SCN3B-201ENST00000299333 EIF5P55010 431 aaKnown RBP17.43■□□□□ 0.38
SCN3B-201ENST00000299333 TRHP20396 242 aaPredicted RBP17.43■□□□□ 0.38
SCN3B-201ENST00000299333 GNAI2P04899 355 aa17.43■□□□□ 0.38
SCN3B-201ENST00000299333 MNAT1P51948 309 aa17.43■□□□□ 0.38
SCN3B-201ENST00000299333 TRMT1Q9NXH9 659 aaKnown RBP17.43■□□□□ 0.38
SCN3B-201ENST00000299333 KIF4BQ2VIQ3 1234 aa17.42■□□□□ 0.38
SCN3B-201ENST00000299333 MICALCLQ6ZW33 695 aa17.42■□□□□ 0.38
SCN3B-201ENST00000299333 CHD1LQ86WJ1 897 aa17.42■□□□□ 0.38
SCN3B-201ENST00000299333 FAM107BQ9H098 131 aa17.42■□□□□ 0.38
SCN3B-201ENST00000299333 TMX1Q9H3N1 280 aa17.42■□□□□ 0.38
SCN3B-201ENST00000299333 TRIM22Q8IYM9 498 aa17.42■□□□□ 0.38
SCN3B-201ENST00000299333 CUX1P39880 1505 aa17.42■□□□□ 0.38
SCN3B-201ENST00000299333 LMAN1P49257 510 aa17.41■□□□□ 0.38
SCN3B-201ENST00000299333 TSR2Q969E8 191 aaKnown RBP17.41■□□□□ 0.38
SCN3B-201ENST00000299333 KIF5CO60282 957 aa17.41■□□□□ 0.38
SCN3B-201ENST00000299333 CLIP2Q9UDT6 1046 aa17.41■□□□□ 0.38
SCN3B-201ENST00000299333 JAKMIP1Q96N16 626 aaKnown RBP17.41■□□□□ 0.38
SCN3B-201ENST00000299333 USP25Q9UHP3 1055 aa17.4■□□□□ 0.38
SCN3B-201ENST00000299333 TWISTNBQ3B726 338 aaPredicted RBP17.4■□□□□ 0.38
SCN3B-201ENST00000299333 CCDC30Q5VVM6 783 aa17.4■□□□□ 0.38
SCN3B-201ENST00000299333 MTHFSP49914 203 aa17.4■□□□□ 0.38
SCN3B-201ENST00000299333 PPP6R1Q9UPN7 881 aa17.4■□□□□ 0.38
SCN3B-201ENST00000299333 BLOC1S2Q6QNY1 142 aa17.4■□□□□ 0.38
SCN3B-201ENST00000299333 SMARCC1Q92922 1105 aaPredicted RBP17.4■□□□□ 0.38
SCN3B-201ENST00000299333 RAI14Q9P0K7 980 aa17.4■□□□□ 0.38
SCN3B-201ENST00000299333 CCDC91Q7Z6B0 441 aa17.39■□□□□ 0.37
SCN3B-201ENST00000299333 ERC1Q8IUD2 1116 aa17.39■□□□□ 0.37
SCN3B-201ENST00000299333 ZSCAN31Q96LW9 406 aaPredicted RBP17.39■□□□□ 0.37
SCN3B-201ENST00000299333 CCDC183Q5T5S1 534 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms