RNA–Protein interactions for RNA: ENST00000295701.9

CNOT9-202, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

TSL 1 (best) BASIC

Gene CNOT9, Length 1,126 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-202ENST00000295701 SGIP1Q9BQI5 828 aa13.59□□□□□ -0.23
CNOT9-202ENST00000295701 TRPC6Q9Y210 931 aa13.59□□□□□ -0.23
CNOT9-202ENST00000295701 PCDHB13Q9Y5F0 798 aa13.59□□□□□ -0.23
CNOT9-202ENST00000295701 CDK19Q9BWU1 502 aa13.58□□□□□ -0.24
CNOT9-202ENST00000295701 PRDM11Q9NQV5 511 aa13.58□□□□□ -0.24
CNOT9-202ENST00000295701 EIF3AQ14152 1382 aaKnown RBP13.58□□□□□ -0.24
CNOT9-202ENST00000295701 ATP7BP35670 1465 aa13.57□□□□□ -0.24
CNOT9-202ENST00000295701 BAG6P46379 1132 aa13.57□□□□□ -0.24
CNOT9-202ENST00000295701 ZC3H6P61129 1189 aaKnown RBP13.57□□□□□ -0.24
CNOT9-202ENST00000295701 STRN4Q9NRL3 753 aa13.57□□□□□ -0.24
CNOT9-202ENST00000295701 KIAA0232Q92628 1395 aa13.57□□□□□ -0.24
CNOT9-202ENST00000295701 NBPF1Q3BBV0 1214 aa13.56□□□□□ -0.24
CNOT9-202ENST00000295701 BMP2KQ9NSY1 1161 aaPredicted RBP13.56□□□□□ -0.24
CNOT9-202ENST00000295701 ITSN1Q15811 1721 aa13.56□□□□□ -0.24
CNOT9-202ENST00000295701 PHRF1Q9P1Y6 1649 aaKnown RBP13.55□□□□□ -0.24
CNOT9-202ENST00000295701 TIE1P35590 1138 aa13.55□□□□□ -0.24
CNOT9-202ENST00000295701 ATN1P54259 1190 aaPredicted RBP13.55□□□□□ -0.24
CNOT9-202ENST00000295701 NBPF8Q3BBV2 869 aa13.55□□□□□ -0.24
CNOT9-202ENST00000295701 THSD7AQ9UPZ6 1657 aa13.55□□□□□ -0.24
CNOT9-202ENST00000295701 ACEP12821 1306 aa13.55□□□□□ -0.24
CNOT9-202ENST00000295701 HRCP23327 699 aa13.54□□□□□ -0.24
CNOT9-202ENST00000295701 SLC39A7Q92504 469 aa13.54□□□□□ -0.24
CNOT9-202ENST00000295701 STAC3Q96MF2 364 aa13.54□□□□□ -0.24
CNOT9-202ENST00000295701 SPATA31A1Q5TZJ5 1347 aa13.54□□□□□ -0.24
CNOT9-202ENST00000295701 RGPD1P0DJD0 1748 aa13.53□□□□□ -0.24
CNOT9-202ENST00000295701 C7P10643 843 aa13.53□□□□□ -0.24
CNOT9-202ENST00000295701 EZH2Q15910 746 aaKnown RBP13.53□□□□□ -0.24
CNOT9-202ENST00000295701 USP35Q9P2H5 1018 aa13.53□□□□□ -0.24
CNOT9-202ENST00000295701 METRNQ9UJH8 293 aa13.53□□□□□ -0.24
CNOT9-202ENST00000295701 TNS1Q9HBL0 1735 aaKnown RBP13.53□□□□□ -0.24
CNOT9-202ENST00000295701 TRIM37O94972 964 aa13.52□□□□□ -0.25
CNOT9-202ENST00000295701 R3HDM1Q15032 1099 aaKnown RBP13.52□□□□□ -0.25
CNOT9-202ENST00000295701 TOPAZ1Q8N9V7 1692 aa13.52□□□□□ -0.25
CNOT9-202ENST00000295701 POLR3AO14802 1390 aaPredicted RBP13.51□□□□□ -0.25
CNOT9-202ENST00000295701 PLEKHG3A1L390 1219 aa13.51□□□□□ -0.25
CNOT9-202ENST00000295701 IFNL1Q8IU54 200 aa13.51□□□□□ -0.25
CNOT9-202ENST00000295701 IFNLR1Q8IU57 520 aaPredicted RBP13.51□□□□□ -0.25
CNOT9-202ENST00000295701 LRP5O75197 1615 aa13.5□□□□□ -0.25
CNOT9-202ENST00000295701 PYGBP11216 843 aa13.5□□□□□ -0.25
CNOT9-202ENST00000295701 EVA1CP58658 441 aa13.5□□□□□ -0.25
CNOT9-202ENST00000295701 LARP1Q6PKG0 1096 aaKnown RBP13.5□□□□□ -0.25
CNOT9-202ENST00000295701 ABTB2Q8N961 1025 aa13.5□□□□□ -0.25
CNOT9-202ENST00000295701 CAMTA1Q9Y6Y1 1673 aa13.5□□□□□ -0.25
CNOT9-202ENST00000295701 GSE1Q14687 1217 aa13.49□□□□□ -0.25
CNOT9-202ENST00000295701 CABP2Q9NPB3 220 aa13.49□□□□□ -0.25
CNOT9-202ENST00000295701 KIAA1210Q9ULL0 1709 aa13.49□□□□□ -0.25
CNOT9-202ENST00000295701 TTLL13PA6NNM8 815 aa13.48□□□□□ -0.25
CNOT9-202ENST00000295701 CAMKK2Q96RR4 588 aa13.48□□□□□ -0.25
CNOT9-202ENST00000295701 NRKQ7Z2Y5 1582 aa13.48□□□□□ -0.25
CNOT9-202ENST00000295701 SSH2Q76I76 1423 aa13.47□□□□□ -0.25
CNOT9-202ENST00000295701 POTEB2H3BUK9 544 aa13.47□□□□□ -0.25
CNOT9-202ENST00000295701 APBA3O96018 575 aa13.47□□□□□ -0.25
CNOT9-202ENST00000295701 SRPK2P78362 688 aaKnown RBP13.47□□□□□ -0.25
CNOT9-202ENST00000295701 FAM196AQ6ZSG2 479 aa13.47□□□□□ -0.25
CNOT9-202ENST00000295701 GCP02774 474 aa13.46□□□□□ -0.25
CNOT9-202ENST00000295701 SPOCK2Q92563 424 aa13.46□□□□□ -0.25
CNOT9-202ENST00000295701 LMO7Q8WWI1 1683 aa13.46□□□□□ -0.26
CNOT9-202ENST00000295701 DISP2A7MBM2 1401 aa13.46□□□□□ -0.26
CNOT9-202ENST00000295701 PPIP5K1Q6PFW1 1433 aa13.46□□□□□ -0.26
CNOT9-202ENST00000295701 USP19O94966 1318 aa13.45□□□□□ -0.26
CNOT9-202ENST00000295701 ZBTB7CA1YPR0 619 aa13.45□□□□□ -0.26
CNOT9-202ENST00000295701 PDE3BQ13370 1112 aa13.45□□□□□ -0.26
CNOT9-202ENST00000295701 BARGINQ6ZT62 677 aa13.45□□□□□ -0.26
CNOT9-202ENST00000295701 CENPJQ9HC77 1338 aaPredicted RBP13.44□□□□□ -0.26
CNOT9-202ENST00000295701 NLRP13Q86W25 1043 aa13.44□□□□□ -0.26
CNOT9-202ENST00000295701 TCP11L2Q8N4U5 519 aa13.44□□□□□ -0.26
CNOT9-202ENST00000295701 CABP1Q9NZU7 370 aa13.44□□□□□ -0.26
CNOT9-202ENST00000295701 CPDO75976 1380 aa13.44□□□□□ -0.26
CNOT9-202ENST00000295701 QRICH2Q9H0J4 1663 aa13.43□□□□□ -0.26
CNOT9-202ENST00000295701 NLRP6P59044 892 aa13.42□□□□□ -0.26
CNOT9-202ENST00000295701 L3MBTL2Q969R5 705 aa13.42□□□□□ -0.26
CNOT9-202ENST00000295701 PLSCR2Q9NRY7 297 aa13.42□□□□□ -0.26
CNOT9-202ENST00000295701 SIN3AQ96ST3 1273 aa13.41□□□□□ -0.26
CNOT9-202ENST00000295701 NUP188Q5SRE5 1749 aa13.41□□□□□ -0.26
CNOT9-202ENST00000295701 COL5A2P05997 1499 aaPredicted RBP13.41□□□□□ -0.26
CNOT9-202ENST00000295701 RREB1Q92766 1687 aa13.4□□□□□ -0.26
CNOT9-202ENST00000295701 RGPD5Q99666 1765 aa13.4□□□□□ -0.26
CNOT9-202ENST00000295701 TMEM106CQ9BVX2 250 aa13.4□□□□□ -0.26
CNOT9-202ENST00000295701 USP6P35125 1406 aa13.39□□□□□ -0.27
CNOT9-202ENST00000295701 PARP4Q9UKK3 1724 aaKnown RBP13.39□□□□□ -0.27
CNOT9-202ENST00000295701 SBF2Q86WG5 1849 aa13.39□□□□□ -0.27
CNOT9-202ENST00000295701 PTF1AQ7RTS3 328 aa13.39□□□□□ -0.27
CNOT9-202ENST00000295701 TRIM35Q9UPQ4 493 aa13.39□□□□□ -0.27
CNOT9-202ENST00000295701 AXIN2Q9Y2T1 843 aa13.39□□□□□ -0.27
CNOT9-202ENST00000295701 THRAP3Q9Y2W1 955 aaKnown RBP13.39□□□□□ -0.27
CNOT9-202ENST00000295701 COL18A1P39060 1754 aa13.39□□□□□ -0.27
CNOT9-202ENST00000295701 OTUD5Q96G74 571 aa13.38□□□□□ -0.27
CNOT9-202ENST00000295701 PCDHB8Q9UN66 801 aa13.38□□□□□ -0.27
CNOT9-202ENST00000295701 PIK3C2AO00443 1686 aa13.37□□□□□ -0.27
CNOT9-202ENST00000295701 SOX12O15370 315 aa13.37□□□□□ -0.27
CNOT9-202ENST00000295701 CRB1P82279 1406 aa13.37□□□□□ -0.27
CNOT9-202ENST00000295701 PEAK1Q9H792 1746 aa13.36□□□□□ -0.27
CNOT9-202ENST00000295701 AATKQ6ZMQ8 1374 aa13.36□□□□□ -0.27
CNOT9-202ENST00000295701 PARD3Q8TEW0 1356 aa13.36□□□□□ -0.27
CNOT9-202ENST00000295701 SLIT3O75094 1523 aa13.36□□□□□ -0.27
CNOT9-202ENST00000295701 CHRM1P11229 460 aaPredicted RBP13.36□□□□□ -0.27
CNOT9-202ENST00000295701 NEUROD1Q13562 356 aa13.36□□□□□ -0.27
CNOT9-202ENST00000295701 TOM1L2Q6ZVM7 507 aa13.36□□□□□ -0.27
CNOT9-202ENST00000295701 CIZ1Q9ULV3 898 aaPredicted RBP13.36□□□□□ -0.27
CNOT9-202ENST00000295701 BRD4O60885 1362 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms