RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 IGSF3O75054 1194 aa17.7■□□□□ 0.42
SDC1-201ENST00000254351 TMEM63CQ9P1W3 806 aa17.7■□□□□ 0.42
SDC1-201ENST00000254351 ATP10AO60312 1499 aa17.7■□□□□ 0.42
SDC1-201ENST00000254351 IPO8O15397 1037 aaKnown RBP17.7■□□□□ 0.42
SDC1-201ENST00000254351 CBX1P83916 185 aa17.7■□□□□ 0.42
SDC1-201ENST00000254351 DTNBO60941 627 aa17.7■□□□□ 0.42
SDC1-201ENST00000254351 TSPYL6Q8N831 410 aa17.69■□□□□ 0.42
SDC1-201ENST00000254351 SMARCA5O60264 1052 aaPredicted RBP17.69■□□□□ 0.42
SDC1-201ENST00000254351 REREQ9P2R6 1566 aa17.69■□□□□ 0.42
SDC1-201ENST00000254351 HMOX1P09601 288 aa17.68■□□□□ 0.42
SDC1-201ENST00000254351 GSPT1P15170 499 aaKnown RBP17.68■□□□□ 0.42
SDC1-201ENST00000254351 ZKSCAN5Q9Y2L8 839 aa17.68■□□□□ 0.42
SDC1-201ENST00000254351 SIRT2Q8IXJ6 389 aa17.67■□□□□ 0.42
SDC1-201ENST00000254351 TET3O43151 1660 aa17.67■□□□□ 0.42
SDC1-201ENST00000254351 ARHGEF40Q8TER5 1519 aa17.67■□□□□ 0.42
SDC1-201ENST00000254351 CDC45O75419 566 aa17.67■□□□□ 0.42
SDC1-201ENST00000254351 PTMSP20962 102 aa17.66■□□□□ 0.42
SDC1-201ENST00000254351 CCDC27Q2M243 656 aa17.66■□□□□ 0.42
SDC1-201ENST00000254351 UGGT1Q9NYU2 1555 aa17.66■□□□□ 0.42
SDC1-201ENST00000254351 LMTK2Q8IWU2 1503 aa17.66■□□□□ 0.42
SDC1-201ENST00000254351 MYOM1P52179 1685 aa17.66■□□□□ 0.42
SDC1-201ENST00000254351 ZMYM3Q14202 1370 aa17.65■□□□□ 0.42
SDC1-201ENST00000254351 SRPK2P78362 688 aaKnown RBP17.65■□□□□ 0.42
SDC1-201ENST00000254351 LAMC1P11047 1609 aa17.65■□□□□ 0.42
SDC1-201ENST00000254351 MADDQ8WXG6 1647 aa17.65■□□□□ 0.42
SDC1-201ENST00000254351 ZNF445P59923 1031 aa17.65■□□□□ 0.42
SDC1-201ENST00000254351 SPDYE4A6NLX3 237 aa17.64■□□□□ 0.41
SDC1-201ENST00000254351 ZBTB7BO15156 539 aaPredicted RBP17.64■□□□□ 0.41
SDC1-201ENST00000254351 GGT6Q6P531 493 aa17.64■□□□□ 0.41
SDC1-201ENST00000254351 TSHZ3Q63HK5 1081 aa17.64■□□□□ 0.41
SDC1-201ENST00000254351 PPIP5K1Q6PFW1 1433 aa17.64■□□□□ 0.41
SDC1-201ENST00000254351 AGLP35573 1532 aa17.64■□□□□ 0.41
SDC1-201ENST00000254351 NUCB2P80303 420 aa17.63■□□□□ 0.41
SDC1-201ENST00000254351 ZDHHC9Q9Y397 364 aa17.63■□□□□ 0.41
SDC1-201ENST00000254351 KDM5AP29375 1690 aaKnown RBP17.62■□□□□ 0.41
SDC1-201ENST00000254351 ZNF500O60304 480 aaPredicted RBP17.62■□□□□ 0.41
SDC1-201ENST00000254351 TTC12Q9H892 705 aaPredicted RBP17.62■□□□□ 0.41
SDC1-201ENST00000254351 PTPRTO14522 1441 aa17.62■□□□□ 0.41
SDC1-201ENST00000254351 EFCAB6Q5THR3 1501 aa17.62■□□□□ 0.41
SDC1-201ENST00000254351 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.62■□□□□ 0.41
SDC1-201ENST00000254351 CEP152O94986 1710 aa17.61■□□□□ 0.41
SDC1-201ENST00000254351 IQSEC2Q5JU85 1478 aa17.61■□□□□ 0.41
SDC1-201ENST00000254351 RABEP1Q15276 862 aa17.61■□□□□ 0.41
SDC1-201ENST00000254351 SASS6Q6UVJ0 657 aa17.61■□□□□ 0.41
SDC1-201ENST00000254351 ABCC3O15438 1527 aa17.6■□□□□ 0.41
SDC1-201ENST00000254351 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.6■□□□□ 0.41
SDC1-201ENST00000254351 PLEKHF1Q96S99 279 aa17.6■□□□□ 0.41
SDC1-201ENST00000254351 IQGAP1P46940 1657 aa17.6■□□□□ 0.41
SDC1-201ENST00000254351 PRKAR2BP31323 418 aa17.6■□□□□ 0.41
SDC1-201ENST00000254351 NEK4P51957 841 aa17.6■□□□□ 0.41
SDC1-201ENST00000254351 LRSAM1Q6UWE0 723 aa17.59■□□□□ 0.41
SDC1-201ENST00000254351 PLEKHM2Q8IWE5 1019 aa17.59■□□□□ 0.41
SDC1-201ENST00000254351 GCC1Q96CN9 775 aa17.59■□□□□ 0.41
SDC1-201ENST00000254351 CCDC39Q9UFE4 941 aa17.59■□□□□ 0.41
SDC1-201ENST00000254351 PDLIM2Q96JY6 352 aa17.59■□□□□ 0.41
SDC1-201ENST00000254351 MAP7D2Q96T17 732 aa17.59■□□□□ 0.41
SDC1-201ENST00000254351 USP25Q9UHP3 1055 aa17.59■□□□□ 0.41
SDC1-201ENST00000254351 DYNC1I1O14576 645 aa17.58■□□□□ 0.41
SDC1-201ENST00000254351 DCTN1Q14203 1278 aa17.58■□□□□ 0.41
SDC1-201ENST00000254351 USP26Q9BXU7 913 aa17.58■□□□□ 0.41
SDC1-201ENST00000254351 ST18O60284 1047 aa17.58■□□□□ 0.4
SDC1-201ENST00000254351 LARP6Q9BRS8 491 aaKnown RBP17.58■□□□□ 0.4
SDC1-201ENST00000254351 ZC3H13Q5T200 1668 aaKnown RBP17.58■□□□□ 0.4
SDC1-201ENST00000254351 TRPM2O94759 1503 aa17.57■□□□□ 0.4
SDC1-201ENST00000254351 KIAA2012Q0VF49 1180 aa17.57■□□□□ 0.4
SDC1-201ENST00000254351 CSPP1Q1MSJ5 1256 aa17.57■□□□□ 0.4
SDC1-201ENST00000254351 PHACTR3Q96KR7 559 aa17.57■□□□□ 0.4
SDC1-201ENST00000254351 SIGLEC1Q9BZZ2 1709 aa17.57■□□□□ 0.4
SDC1-201ENST00000254351 SPHKAPQ2M3C7 1700 aa17.57■□□□□ 0.4
SDC1-201ENST00000254351 GADD45BO75293 160 aaPredicted RBP17.56■□□□□ 0.4
SDC1-201ENST00000254351 SDSP20132 328 aa17.56■□□□□ 0.4
SDC1-201ENST00000254351 FAM83GA6ND36 823 aa17.56■□□□□ 0.4
SDC1-201ENST00000254351 DIAPH1O60610 1272 aaKnown RBP17.56■□□□□ 0.4
SDC1-201ENST00000254351 PPP4R3BQ5MIZ7 849 aa17.56■□□□□ 0.4
SDC1-201ENST00000254351 CT47B1P0C2W7 299 aaPredicted RBP17.55■□□□□ 0.4
SDC1-201ENST00000254351 KRT24Q2M2I5 525 aa17.55■□□□□ 0.4
SDC1-201ENST00000254351 NOS1P29475 1434 aa17.55■□□□□ 0.4
SDC1-201ENST00000254351 MINK1Q8N4C8 1332 aaPredicted RBP17.55■□□□□ 0.4
SDC1-201ENST00000254351 UPF3BQ9BZI7 483 aaKnown RBP17.55■□□□□ 0.4
SDC1-201ENST00000254351 CAMSAP1Q5T5Y3 1602 aa17.55■□□□□ 0.4
SDC1-201ENST00000254351 NPATQ14207 1427 aa17.54■□□□□ 0.4
SDC1-201ENST00000254351 SHPRHQ149N8 1683 aa17.54■□□□□ 0.4
SDC1-201ENST00000254351 PPP6R1Q9UPN7 881 aa17.54■□□□□ 0.4
SDC1-201ENST00000254351 TSPY26PQ9H489 355 aa17.54■□□□□ 0.4
SDC1-201ENST00000254351 VAMP4O75379 141 aa17.53■□□□□ 0.4
SDC1-201ENST00000254351 TTC22Q5TAA0 569 aa17.53■□□□□ 0.4
SDC1-201ENST00000254351 INTS3Q68E01 1043 aaKnown RBP17.53■□□□□ 0.4
SDC1-201ENST00000254351 CYP2E1P05181 493 aaPredicted RBP17.53■□□□□ 0.4
SDC1-201ENST00000254351 HS1BP3Q53T59 392 aa17.53■□□□□ 0.4
SDC1-201ENST00000254351 SMAP1Q8IYB5 467 aaPredicted RBP17.53■□□□□ 0.4
SDC1-201ENST00000254351 C8orf58Q8NAV2 365 aa17.53■□□□□ 0.4
SDC1-201ENST00000254351 CCDC94Q9BW85 323 aaPredicted RBP17.53■□□□□ 0.4
SDC1-201ENST00000254351 CLTCL1P53675 1640 aa17.53■□□□□ 0.4
SDC1-201ENST00000254351 SLC24A1O60721 1099 aa17.52■□□□□ 0.4
SDC1-201ENST00000254351 ATP2B3Q16720 1220 aa17.52■□□□□ 0.4
SDC1-201ENST00000254351 MRPL50Q8N5N7 158 aaKnown RBP17.52■□□□□ 0.4
SDC1-201ENST00000254351 ARHGAP31Q2M1Z3 1444 aa17.52■□□□□ 0.4
SDC1-201ENST00000254351 TERF1P54274 439 aa17.52■□□□□ 0.4
SDC1-201ENST00000254351 SPC24Q8NBT2 197 aa17.52■□□□□ 0.4
SDC1-201ENST00000254351 ZNF710Q8N1W2 664 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms