RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 GOLGA6L19H0YKK7 550 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 CCT4P50991 539 aaKnown RBP5.57□□□□□ -1.52
VPS13C-201ENST00000249837 KDM5CP41229 1560 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 SLC26A8Q96RN1 970 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 GDPD2Q9HCC8 539 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 LRRCC1Q9C099 1032 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 ABCA5Q8WWZ7 1642 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 NUTM1Q86Y26 1132 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 CWC22Q9HCG8 908 aaKnown RBP5.57□□□□□ -1.52
VPS13C-201ENST00000249837 BICD2Q8TD16 824 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 TRHP20396 242 aaPredicted RBP5.57□□□□□ -1.52
VPS13C-201ENST00000249837 SLC52A1Q9NWF4 448 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 AK9Q5TCS8 1911 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 FAM83GA6ND36 823 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 NUCB1Q02818 461 aa5.57□□□□□ -1.52
VPS13C-201ENST00000249837 TRAPPC8Q9Y2L5 1435 aa5.56□□□□□ -1.52
VPS13C-201ENST00000249837 CCDC30Q5VVM6 783 aa5.56□□□□□ -1.52
VPS13C-201ENST00000249837 BECN2A8MW95 431 aa5.56□□□□□ -1.52
VPS13C-201ENST00000249837 FBXO31Q5XUX0 539 aaPredicted RBP5.56□□□□□ -1.52
VPS13C-201ENST00000249837 PHACTR3Q96KR7 559 aa5.56□□□□□ -1.52
VPS13C-201ENST00000249837 RTEL1-TNFRSF6BF6WH68 1400 aa5.56□□□□□ -1.52
VPS13C-201ENST00000249837 ZSCAN30Q86W11 494 aa5.56□□□□□ -1.52
VPS13C-201ENST00000249837 EIF2AK4Q9P2K8 1649 aaKnown RBP5.56□□□□□ -1.52
VPS13C-201ENST00000249837 GAS2L2Q8NHY3 880 aa5.56□□□□□ -1.52
VPS13C-201ENST00000249837 KDM4AO75164 1064 aa5.56□□□□□ -1.52
VPS13C-201ENST00000249837 C14orf93Q9H972 538 aaKnown RBP5.56□□□□□ -1.52
VPS13C-201ENST00000249837 HDGFL1Q5TGJ6 251 aa5.56□□□□□ -1.52
VPS13C-201ENST00000249837 ISY1Q9ULR0 285 aaKnown RBP5.56□□□□□ -1.52
VPS13C-201ENST00000249837 C16orf71Q8IYS4 520 aaPredicted RBP5.56□□□□□ -1.52
VPS13C-201ENST00000249837 IFT57Q9NWB7 429 aa5.56□□□□□ -1.52
VPS13C-201ENST00000249837 CLASRPQ8N2M8 674 aaKnown RBP5.56□□□□□ -1.52
VPS13C-201ENST00000249837 MRPL50Q8N5N7 158 aaKnown RBP5.55□□□□□ -1.52
VPS13C-201ENST00000249837 LARP6Q9BRS8 491 aaKnown RBP5.55□□□□□ -1.52
VPS13C-201ENST00000249837 MCM2P49736 904 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 XPCQ01831 940 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-201ENST00000249837 CCAR2Q8N163 923 aaKnown RBP5.55□□□□□ -1.52
VPS13C-201ENST00000249837 NUP160Q12769 1436 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 SASS6Q6UVJ0 657 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 WDR33Q9C0J8 1336 aaKnown RBP5.55□□□□□ -1.52
VPS13C-201ENST00000249837 FYB1O15117 783 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 CEBPZQ03701 1054 aaKnown RBP5.55□□□□□ -1.52
VPS13C-201ENST00000249837 RIC3Q7Z5B4 369 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 DUOX2Q9NRD8 1548 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 C8orf58Q8NAV2 365 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 FSD1Q9BTV5 496 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 ZNF771Q7L3S4 317 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-201ENST00000249837 POLR3AO14802 1390 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-201ENST00000249837 UQCRHLA0A096LP55 91 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 PIK3C2GO75747 1445 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 UQCRHP07919 91 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 CREBRFQ8IUR6 639 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 ADGRL1O94910 1474 aa5.55□□□□□ -1.52
VPS13C-201ENST00000249837 CDK11BP21127 795 aaKnown RBP5.54□□□□□ -1.52
VPS13C-201ENST00000249837 TPM4P67936 248 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 CNTROBQ8N137 903 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 ATAD2Q6PL18 1390 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 DDX58O95786 925 aaKnown RBP5.54□□□□□ -1.52
VPS13C-201ENST00000249837 TPD52L1Q16890 204 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-201ENST00000249837 ALDH1L2Q3SY69 923 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 NEXNQ0ZGT2 675 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 RPAP2Q8IXW5 612 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-201ENST00000249837 SRCIN1Q9C0H9 1055 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 MBIPQ9NS73 344 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 SRGAP3O43295 1099 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 APPP05067 770 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 TRIM5Q9C035 493 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 ADGRL2O95490 1459 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 KDM5BQ9UGL1 1544 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 FERMT3Q86UX7 667 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 JAKMIP1Q96N16 626 aaKnown RBP5.54□□□□□ -1.52
VPS13C-201ENST00000249837 SHANK2Q9UPX8 1470 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 VAMP4O75379 141 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-201ENST00000249837 CCDC61Q9Y6R9 512 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 STK3Q13188 491 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 PRDM10Q9NQV6 1147 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 RRP9O43818 475 aaKnown RBP5.54□□□□□ -1.52
VPS13C-201ENST00000249837 KRT24Q2M2I5 525 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 SMC5Q8IY18 1101 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 ABTB2Q8N961 1025 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 MEIS3Q99687 375 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 TOMM22Q9NS69 142 aa5.54□□□□□ -1.52
VPS13C-201ENST00000249837 RNF20Q5VTR2 975 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 TSPYL6Q8N831 410 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 SDF4Q9BRK5 362 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 ZBTB40Q9NUA8 1239 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 IL16Q14005 1332 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 BMP2KLQ5H9B9 411 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 MAP7D2Q96T17 732 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 PDRG1Q9NUG6 133 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 NPHP1O15259 732 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 SDSP20132 328 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 USHBP1Q8N6Y0 703 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 OTUD7AQ8TE49 926 aaPredicted RBP5.53□□□□□ -1.52
VPS13C-201ENST00000249837 FMNL2Q96PY5 1086 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 LRRFIP2Q9Y608 721 aaKnown RBP5.53□□□□□ -1.52
VPS13C-201ENST00000249837 ZNF530Q6P9A1 599 aaPredicted RBP5.53□□□□□ -1.52
VPS13C-201ENST00000249837 NEUROD6Q96NK8 337 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 LRRIQ1Q96JM4 1722 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 HSP90AB4PQ58FF6 505 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms