RNA–Protein interactions for RNA: ENST00000249806.10

CLN6-201, Transcript of CLN6, transmembrane ER protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN6, Length 2,243 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-201ENST00000249806 USP6P35125 1406 aa27.78■■■□□ 2.04
CLN6-201ENST00000249806 NRKQ7Z2Y5 1582 aa27.78■■■□□ 2.04
CLN6-201ENST00000249806 NOB1Q9ULX3 412 aaKnown RBP27.77■■■□□ 2.04
CLN6-201ENST00000249806 ATF7IPQ6VMQ6 1270 aa27.75■■■□□ 2.03
CLN6-201ENST00000249806 OVOS2A0A0J9YW53 1432 aa27.74■■■□□ 2.03
CLN6-201ENST00000249806 OVOS2Q6IE36 1432 aa27.74■■■□□ 2.03
CLN6-201ENST00000249806 SOX12O15370 315 aa27.73■■■□□ 2.03
CLN6-201ENST00000249806 EIF4A2Q14240 407 aaKnown RBP27.73■■■□□ 2.03
CLN6-201ENST00000249806 PTCH1Q13635 1447 aa27.72■■■□□ 2.03
CLN6-201ENST00000249806 DLG5Q8TDM6 1919 aa27.71■■■□□ 2.03
CLN6-201ENST00000249806 RGPD8O14715 1765 aaPredicted RBP27.71■■■□□ 2.03
CLN6-201ENST00000249806 AEBP1Q8IUX7 1158 aa27.71■■■□□ 2.03
CLN6-201ENST00000249806 FAM83GA6ND36 823 aa27.7■■■□□ 2.02
CLN6-201ENST00000249806 SSH2Q76I76 1423 aa27.7■■■□□ 2.02
CLN6-201ENST00000249806 HSP90AB2PQ58FF8 381 aa27.69■■■□□ 2.02
CLN6-201ENST00000249806 ITPRIPQ8IWB1 547 aa27.69■■■□□ 2.02
CLN6-201ENST00000249806 SULT6B1Q6IMI4 303 aa27.69■■■□□ 2.02
CLN6-201ENST00000249806 KCNA6P17658 529 aa27.68■■■□□ 2.02
CLN6-201ENST00000249806 CALD1Q05682 793 aaKnown RBP27.68■■■□□ 2.02
CLN6-201ENST00000249806 ALDH1L2Q3SY69 923 aa27.68■■■□□ 2.02
CLN6-201ENST00000249806 NGDNQ8NEJ9 315 aaKnown RBP27.68■■■□□ 2.02
CLN6-201ENST00000249806 GNAI1P63096 354 aa27.68■■■□□ 2.02
CLN6-201ENST00000249806 TSPYL6Q8N831 410 aa27.68■■■□□ 2.02
CLN6-201ENST00000249806 RWDD1Q9H446 243 aaPredicted RBP27.68■■■□□ 2.02
CLN6-201ENST00000249806 MBIPQ9NS73 344 aa27.68■■■□□ 2.02
CLN6-201ENST00000249806 DCTN1Q14203 1278 aa27.67■■■□□ 2.02
CLN6-201ENST00000249806 IFT57Q9NWB7 429 aa27.67■■■□□ 2.02
CLN6-201ENST00000249806 DIP2AQ14689 1571 aa27.67■■■□□ 2.02
CLN6-201ENST00000249806 VAMP4O75379 141 aa27.67■■■□□ 2.02
CLN6-201ENST00000249806 ZNF853P0CG23 659 aa27.67■■■□□ 2.02
CLN6-201ENST00000249806 TMEM57Q8N5G2 664 aa27.67■■■□□ 2.02
CLN6-201ENST00000249806 KIF16BQ96L93 1317 aa27.66■■■□□ 2.02
CLN6-201ENST00000249806 ELL2O00472 640 aaPredicted RBP27.66■■■□□ 2.02
CLN6-201ENST00000249806 DDX19BQ9UMR2 479 aa27.65■■■□□ 2.02
CLN6-201ENST00000249806 USP31Q70CQ4 1352 aa27.65■■■□□ 2.02
CLN6-201ENST00000249806 PEAK1Q9H792 1746 aa27.65■■■□□ 2.02
CLN6-201ENST00000249806 IPO8O15397 1037 aaKnown RBP27.65■■■□□ 2.02
CLN6-201ENST00000249806 PDZRN3Q9UPQ7 1066 aa27.64■■■□□ 2.02
CLN6-201ENST00000249806 NALCNQ8IZF0 1738 aa27.64■■■□□ 2.02
CLN6-201ENST00000249806 LMOD3Q0VAK6 560 aa27.64■■■□□ 2.01
CLN6-201ENST00000249806 CFAP44Q96MT7 982 aa27.63■■■□□ 2.01
CLN6-201ENST00000249806 XRN1Q8IZH2 1706 aaKnown RBP27.63■■■□□ 2.01
CLN6-201ENST00000249806 TTC21AQ8NDW8 1320 aa27.63■■■□□ 2.01
CLN6-201ENST00000249806 CEP170BQ9Y4F5 1589 aaPredicted RBP27.62■■■□□ 2.01
CLN6-201ENST00000249806 ZNF428Q96B54 188 aa27.61■■■□□ 2.01
CLN6-201ENST00000249806 MAP3K19Q56UN5 1328 aa27.6■■■□□ 2.01
CLN6-201ENST00000249806 C8orf58Q8NAV2 365 aa27.59■■■□□ 2.01
CLN6-201ENST00000249806 BRPF1P55201 1214 aaPredicted RBP27.59■■■□□ 2.01
CLN6-201ENST00000249806 MRPL50Q8N5N7 158 aaKnown RBP27.59■■■□□ 2.01
CLN6-201ENST00000249806 RIMS1Q86UR5 1692 aaKnown RBP27.58■■■□□ 2.01
CLN6-201ENST00000249806 NBR1Q14596 966 aa27.58■■■□□ 2.01
CLN6-201ENST00000249806 ZBTB40Q9NUA8 1239 aa27.58■■■□□ 2.01
CLN6-201ENST00000249806 TWISTNBQ3B726 338 aaPredicted RBP27.57■■■□□ 2
CLN6-201ENST00000249806 DDRGK1Q96HY6 314 aa27.56■■■□□ 2
CLN6-201ENST00000249806 HDAC1Q13547 482 aaPredicted RBP27.54■■■□□ 2
CLN6-201ENST00000249806 NUTM2GQ5VZR2 741 aa27.54■■■□□ 2
CLN6-201ENST00000249806 MCM10Q7L590 875 aa27.54■■■□□ 2
CLN6-201ENST00000249806 RBM33Q96EV2 1170 aaKnown RBP27.54■■■□□ 2
CLN6-201ENST00000249806 PIK3R4Q99570 1358 aa27.54■■■□□ 2
CLN6-201ENST00000249806 RGPD1P0DJD0 1748 aa27.53■■■□□ 2
CLN6-201ENST00000249806 NLRP6P59044 892 aa27.53■■■□□ 2
CLN6-201ENST00000249806 SEC24BO95487 1268 aa27.53■■■□□ 2
CLN6-201ENST00000249806 ANKLE2Q86XL3 938 aa27.53■■■□□ 2
CLN6-201ENST00000249806 VIRMAQ69YN4 1812 aaKnown RBP27.52■■■□□ 2
CLN6-201ENST00000249806 PIK3C2AO00443 1686 aa27.52■■■□□ 2
CLN6-201ENST00000249806 AMPHP49418 695 aa27.51■■□□□ 1.99
CLN6-201ENST00000249806 SBNO1A3KN83 1393 aa27.5■■□□□ 1.99
CLN6-201ENST00000249806 FLT4P35916 1363 aa27.5■■□□□ 1.99
CLN6-201ENST00000249806 ANKARQ7Z5J8 1434 aa27.5■■□□□ 1.99
CLN6-201ENST00000249806 ARHGAP45Q92619 1136 aa27.5■■□□□ 1.99
CLN6-201ENST00000249806 SLC4A3P48751 1232 aa27.49■■□□□ 1.99
CLN6-201ENST00000249806 FMN2Q9NZ56 1722 aa27.48■■□□□ 1.99
CLN6-201ENST00000249806 KRT24Q2M2I5 525 aa27.48■■□□□ 1.99
CLN6-201ENST00000249806 ZBTB7BO15156 539 aaPredicted RBP27.47■■□□□ 1.99
CLN6-201ENST00000249806 FOXO3O43524 673 aa27.47■■□□□ 1.99
CLN6-201ENST00000249806 USP19O94966 1318 aa27.47■■□□□ 1.99
CLN6-201ENST00000249806 EYA1Q99502 592 aa27.47■■□□□ 1.99
CLN6-201ENST00000249806 ARHGEF10O15013 1369 aa27.46■■□□□ 1.99
CLN6-201ENST00000249806 CHL1O00533 1208 aa27.46■■□□□ 1.99
CLN6-201ENST00000249806 ABTB2Q8N961 1025 aa27.46■■□□□ 1.99
CLN6-201ENST00000249806 CHD2O14647 1828 aaKnown RBP27.45■■□□□ 1.99
CLN6-201ENST00000249806 MTHFSDQ2M296 383 aaKnown RBP27.45■■□□□ 1.98
CLN6-201ENST00000249806 SMC5Q8IY18 1101 aa27.45■■□□□ 1.98
CLN6-201ENST00000249806 ABCC4O15439 1325 aa27.42■■□□□ 1.98
CLN6-201ENST00000249806 C1orf115Q9H7X2 142 aa27.42■■□□□ 1.98
CLN6-201ENST00000249806 MIS18AQ9NYP9 233 aa27.41■■□□□ 1.98
CLN6-201ENST00000249806 C14orf37Q86TY3 774 aa27.41■■□□□ 1.98
CLN6-201ENST00000249806 PHF8Q9UPP1 1060 aa27.41■■□□□ 1.98
CLN6-201ENST00000249806 KDRP35968 1356 aa27.41■■□□□ 1.98
CLN6-201ENST00000249806 IGSF1Q8N6C5 1336 aa27.41■■□□□ 1.98
CLN6-201ENST00000249806 MARF1Q9Y4F3 1742 aaKnown RBP27.4■■□□□ 1.98
CLN6-201ENST00000249806 HOXC9P31274 260 aa27.4■■□□□ 1.98
CLN6-201ENST00000249806 CRB1P82279 1406 aa27.39■■□□□ 1.98
CLN6-201ENST00000249806 ZNF142P52746 1687 aaPredicted RBP27.38■■□□□ 1.97
CLN6-201ENST00000249806 DAXXQ9UER7 740 aaPredicted RBP27.38■■□□□ 1.97
CLN6-201ENST00000249806 SETD1BQ9UPS6 1966 aaKnown RBP27.38■■□□□ 1.97
CLN6-201ENST00000249806 API5Q9BZZ5 524 aaKnown RBP27.37■■□□□ 1.97
CLN6-201ENST00000249806 RTF1Q92541 710 aaKnown RBP27.37■■□□□ 1.97
CLN6-201ENST00000249806 ADAMTSL3P82987 1691 aa27.36■■□□□ 1.97
CLN6-201ENST00000249806 LTV1Q96GA3 475 aaPredicted RBP27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms