RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 ANKRD26Q9UPS8 1709 aa17.78■□□□□ 0.44
SLIRP-201ENST00000238688 TMC1Q8TDI8 760 aa17.77■□□□□ 0.44
SLIRP-201ENST00000238688 DEFB132Q7Z7B7 95 aa17.76■□□□□ 0.43
SLIRP-201ENST00000238688 STRN4Q9NRL3 753 aa17.76■□□□□ 0.43
SLIRP-201ENST00000238688 TERF2IPQ9NYB0 399 aa17.76■□□□□ 0.43
SLIRP-201ENST00000238688 CGNL1Q0VF96 1302 aa17.75■□□□□ 0.43
SLIRP-201ENST00000238688 RGPD5Q99666 1765 aa17.75■□□□□ 0.43
SLIRP-201ENST00000238688 CD163L1Q9NR16 1453 aa17.75■□□□□ 0.43
SLIRP-201ENST00000238688 TTC21BQ7Z4L5 1316 aa17.74■□□□□ 0.43
SLIRP-201ENST00000238688 NLRP6P59044 892 aa17.74■□□□□ 0.43
SLIRP-201ENST00000238688 FAM182BQ5T319 152 aa17.74■□□□□ 0.43
SLIRP-201ENST00000238688 LARP1Q6PKG0 1096 aaKnown RBP17.74■□□□□ 0.43
SLIRP-201ENST00000238688 ZNF692Q9BU19 519 aaPredicted RBP17.73■□□□□ 0.43
SLIRP-201ENST00000238688 COL5A2P05997 1499 aaPredicted RBP17.73■□□□□ 0.43
SLIRP-201ENST00000238688 NSD3Q9BZ95 1437 aa17.72■□□□□ 0.43
SLIRP-201ENST00000238688 TNS1Q9HBL0 1735 aaKnown RBP17.72■□□□□ 0.43
SLIRP-201ENST00000238688 A0A0G2JS52 829 aa17.72■□□□□ 0.43
SLIRP-201ENST00000238688 MYT1Q01538 1121 aa17.72■□□□□ 0.43
SLIRP-201ENST00000238688 PNISRQ8TF01 805 aaKnown RBP17.72■□□□□ 0.43
SLIRP-201ENST00000238688 RGPD1P0DJD0 1748 aa17.72■□□□□ 0.43
SLIRP-201ENST00000238688 USP54Q70EL1 1684 aa17.71■□□□□ 0.43
SLIRP-201ENST00000238688 BARGINQ6ZT62 677 aa17.71■□□□□ 0.43
SLIRP-201ENST00000238688 KIF20BQ96Q89 1820 aa17.7■□□□□ 0.42
SLIRP-201ENST00000238688 AATKQ6ZMQ8 1374 aa17.7■□□□□ 0.42
SLIRP-201ENST00000238688 HDGFL2Q7Z4V5 671 aaPredicted RBP17.7■□□□□ 0.42
SLIRP-201ENST00000238688 ZBED9Q6R2W3 1325 aa17.7■□□□□ 0.42
SLIRP-201ENST00000238688 NFAT5O94916 1531 aa17.69■□□□□ 0.42
SLIRP-201ENST00000238688 EVA1CP58658 441 aa17.69■□□□□ 0.42
SLIRP-201ENST00000238688 USP35Q9P2H5 1018 aa17.69■□□□□ 0.42
SLIRP-201ENST00000238688 PARP4Q9UKK3 1724 aaKnown RBP17.69■□□□□ 0.42
SLIRP-201ENST00000238688 TTC21AQ8NDW8 1320 aa17.69■□□□□ 0.42
SLIRP-201ENST00000238688 CC2D1BQ5T0F9 858 aaKnown RBP17.68■□□□□ 0.42
SLIRP-201ENST00000238688 CARD14Q9BXL6 1004 aa17.68■□□□□ 0.42
SLIRP-201ENST00000238688 SLC12A5Q9H2X9 1139 aa17.68■□□□□ 0.42
SLIRP-201ENST00000238688 ZRANB1Q9UGI0 708 aa17.68■□□□□ 0.42
SLIRP-201ENST00000238688 AXIN2Q9Y2T1 843 aa17.68■□□□□ 0.42
SLIRP-201ENST00000238688 ARHGEF25Q86VW2 580 aa17.67■□□□□ 0.42
SLIRP-201ENST00000238688 TCP11L2Q8N4U5 519 aa17.67■□□□□ 0.42
SLIRP-201ENST00000238688 WNK3Q9BYP7 1800 aa17.67■□□□□ 0.42
SLIRP-201ENST00000238688 A0A1W2PP64 1363 aa17.66■□□□□ 0.42
SLIRP-201ENST00000238688 PPP2R1AP30153 589 aa17.66■□□□□ 0.42
SLIRP-201ENST00000238688 USP31Q70CQ4 1352 aa17.66■□□□□ 0.42
SLIRP-201ENST00000238688 CRB1P82279 1406 aa17.65■□□□□ 0.42
SLIRP-201ENST00000238688 HNRNPUQ00839 825 aaKnown RBP eCLIP17.65■□□□□ 0.42
SLIRP-201ENST00000238688 SF3B2Q13435 895 aaKnown RBP17.65■□□□□ 0.42
SLIRP-201ENST00000238688 CCDC184Q52MB2 194 aa17.65■□□□□ 0.42
SLIRP-201ENST00000238688 EDC4Q6P2E9 1401 aaKnown RBP17.64■□□□□ 0.42
SLIRP-201ENST00000238688 ZBTB7CA1YPR0 619 aa17.64■□□□□ 0.41
SLIRP-201ENST00000238688 FAM9BQ8IZU0 186 aa17.64■□□□□ 0.41
SLIRP-201ENST00000238688 THRAP3Q9Y2W1 955 aaKnown RBP17.64■□□□□ 0.41
SLIRP-201ENST00000238688 SRCAPQ6ZRS2 3230 aa17.64■□□□□ 0.41
SLIRP-201ENST00000238688 PEAK1Q9H792 1746 aa17.64■□□□□ 0.41
SLIRP-201ENST00000238688 DISP2A7MBM2 1401 aa17.64■□□□□ 0.41
SLIRP-201ENST00000238688 NGEFQ8N5V2 710 aa17.63■□□□□ 0.41
SLIRP-201ENST00000238688 LTN1O94822 1766 aa17.63■□□□□ 0.41
SLIRP-201ENST00000238688 SBF2Q86WG5 1849 aa17.63■□□□□ 0.41
SLIRP-201ENST00000238688 LRRC37A3O60309 1634 aa17.62■□□□□ 0.41
SLIRP-201ENST00000238688 EN1Q05925 392 aaPredicted RBP17.62■□□□□ 0.41
SLIRP-201ENST00000238688 NME9Q86XW9 330 aa17.62■□□□□ 0.41
SLIRP-201ENST00000238688 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.62■□□□□ 0.41
SLIRP-201ENST00000238688 KCNH5Q8NCM2 988 aa17.62■□□□□ 0.41
SLIRP-201ENST00000238688 SOX12O15370 315 aa17.61■□□□□ 0.41
SLIRP-201ENST00000238688 BAG6P46379 1132 aa17.61■□□□□ 0.41
SLIRP-201ENST00000238688 FAM196AQ6ZSG2 479 aa17.61■□□□□ 0.41
SLIRP-201ENST00000238688 TRIM37O94972 964 aa17.6■□□□□ 0.41
SLIRP-201ENST00000238688 MORC1Q86VD1 984 aa17.6■□□□□ 0.41
SLIRP-201ENST00000238688 WDR17Q8IZU2 1322 aa17.6■□□□□ 0.41
SLIRP-201ENST00000238688 ABCC6O95255 1503 aa17.59■□□□□ 0.41
SLIRP-201ENST00000238688 PDE3BQ13370 1112 aa17.58■□□□□ 0.4
SLIRP-201ENST00000238688 TOM1L2Q6ZVM7 507 aa17.58■□□□□ 0.4
SLIRP-201ENST00000238688 CAMKK2Q96RR4 588 aa17.58■□□□□ 0.4
SLIRP-201ENST00000238688 OVOS2A0A0J9YW53 1432 aa17.57■□□□□ 0.4
SLIRP-201ENST00000238688 OVOS2Q6IE36 1432 aa17.57■□□□□ 0.4
SLIRP-201ENST00000238688 RREB1Q92766 1687 aa17.57■□□□□ 0.4
SLIRP-201ENST00000238688 WDR43Q15061 677 aaKnown RBP eCLIP17.56■□□□□ 0.4
SLIRP-201ENST00000238688 EZH2Q15910 746 aaKnown RBP17.56■□□□□ 0.4
SLIRP-201ENST00000238688 CFAP53Q96M91 514 aa17.56■□□□□ 0.4
SLIRP-201ENST00000238688 CARD10Q9BWT7 1032 aa17.55■□□□□ 0.4
SLIRP-201ENST00000238688 NUP188Q5SRE5 1749 aa17.55■□□□□ 0.4
SLIRP-201ENST00000238688 PSDA5PKW4 1024 aaPredicted RBP17.53■□□□□ 0.4
SLIRP-201ENST00000238688 APBA3O96018 575 aa17.53■□□□□ 0.4
SLIRP-201ENST00000238688 NCBP3Q53F19 620 aaKnown RBP17.53■□□□□ 0.4
SLIRP-201ENST00000238688 FYB1O15117 783 aa17.52■□□□□ 0.4
SLIRP-201ENST00000238688 CNGB1Q14028 1251 aaPredicted RBP17.52■□□□□ 0.4
SLIRP-201ENST00000238688 MARCH10Q8NA82 808 aaPredicted RBP17.52■□□□□ 0.4
SLIRP-201ENST00000238688 ERBB3P21860 1342 aa17.51■□□□□ 0.39
SLIRP-201ENST00000238688 LRP5O75197 1615 aa17.51■□□□□ 0.39
SLIRP-201ENST00000238688 OVOS2A0A0G2JMS6 1433 aa17.51■□□□□ 0.39
SLIRP-201ENST00000238688 DDB1Q16531 1140 aa17.51■□□□□ 0.39
SLIRP-201ENST00000238688 PTF1AQ7RTS3 328 aa17.51■□□□□ 0.39
SLIRP-201ENST00000238688 SMG6Q86US8 1419 aaKnown RBP17.5■□□□□ 0.39
SLIRP-201ENST00000238688 BCL9O00512 1426 aa17.49■□□□□ 0.39
SLIRP-201ENST00000238688 RGPD3A6NKT7 1758 aaPredicted RBP17.49■□□□□ 0.39
SLIRP-201ENST00000238688 RGPD2P0DJD1 1756 aa17.49■□□□□ 0.39
SLIRP-201ENST00000238688 RGPD4Q7Z3J3 1758 aa17.49■□□□□ 0.39
SLIRP-201ENST00000238688 CSB-PGBD3P0DP91 1061 aa17.49■□□□□ 0.39
SLIRP-201ENST00000238688 FBLN1P23142 703 aa17.49■□□□□ 0.39
SLIRP-201ENST00000238688 CDCA7Q9BWT1 371 aaPredicted RBP17.49■□□□□ 0.39
SLIRP-201ENST00000238688 MAP2P11137 1827 aaKnown RBP17.48■□□□□ 0.39
SLIRP-201ENST00000238688 R3HDM1Q15032 1099 aaKnown RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms