RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 MTAPQ13126 283 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 GAS6Q14393 721 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 LBRQ14739 615 aaKnown RBP15.24■□□□□ 0.03
NUP54-213ENST00000513352 NYAP1Q6ZVC0 841 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 BMP8AQ7Z5Y6 402 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 BBS5Q8N3I7 341 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 RYBPQ8N488 228 aaPredicted RBP15.24■□□□□ 0.03
NUP54-213ENST00000513352 SPEM1Q8N4L4 309 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 TMEM105Q8N8V8 129 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 COG1Q8WTW3 980 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 MAIP1Q8WWC4 291 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 MYO19Q96H55 970 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 MS4A14Q96JA4 679 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 CAPZA3Q96KX2 299 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 CCDC114Q96M63 670 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 TMEM245Q9H330 911 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 PDFQ9HBH1 243 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 R3HDM2Q9Y2K5 976 aaKnown RBP15.24■□□□□ 0.03
NUP54-213ENST00000513352 TTLL3Q9Y4R7 772 aa15.24■□□□□ 0.03
NUP54-213ENST00000513352 CKAP5Q14008 2032 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 EDDM13A0A1B0GTR0 161 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 CHURC1-FNTBB4DL54 471 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 PGRMC1O00264 195 aaKnown RBP15.23■□□□□ 0.03
NUP54-213ENST00000513352 ZBTB24O43167 697 aaPredicted RBP15.23■□□□□ 0.03
NUP54-213ENST00000513352 ADAM23O75077 832 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 CHRM1P11229 460 aaPredicted RBP15.23■□□□□ 0.03
NUP54-213ENST00000513352 CCNCP24863 283 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 PPIDQ08752 370 aaKnown RBP15.23■□□□□ 0.03
NUP54-213ENST00000513352 KLF1Q13351 362 aaPredicted RBP15.23■□□□□ 0.03
NUP54-213ENST00000513352 HNRNPA1L2Q32P51 320 aaKnown RBP15.23■□□□□ 0.03
NUP54-213ENST00000513352 TMEM31Q5JXX7 168 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 KIAA1211LQ6NV74 962 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 DARS2Q6PI48 645 aaKnown RBP15.23■□□□□ 0.03
NUP54-213ENST00000513352 METTL3Q86U44 580 aaKnown RBP15.23■□□□□ 0.03
NUP54-213ENST00000513352 CACUL1Q86Y37 369 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 CDKL3Q8IVW4 592 aaPredicted RBP15.23■□□□□ 0.03
NUP54-213ENST00000513352 PCDH20Q8N6Y1 951 aaKnown RBP15.23■□□□□ 0.03
NUP54-213ENST00000513352 KDM1BQ8NB78 822 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 CASKIN2Q8WXE0 1202 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 ATG4AQ8WYN0 398 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 ZNF599Q96NL3 588 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 OLFM3Q96PB7 478 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 TSGA13Q96PP4 275 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 QKIQ96PU8 341 aaKnown RBP eCLIP15.23■□□□□ 0.03
NUP54-213ENST00000513352 HHIPQ96QV1 700 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 NAP1L3Q99457 506 aaPredicted RBP15.23■□□□□ 0.03
NUP54-213ENST00000513352 FERMT1Q9BQL6 677 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 IER2Q9BTL4 223 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 CEP44Q9C0F1 390 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 BRD8Q9H0E9 1235 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 SMARCAL1Q9NZC9 954 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 SEPT3Q9UH03 358 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 FARP1Q9Y4F1 1045 aaPredicted RBP15.23■□□□□ 0.03
NUP54-213ENST00000513352 SAR1BQ9Y6B6 198 aa15.23■□□□□ 0.03
NUP54-213ENST00000513352 TCRBV21S2A2A0A5A6 115 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 HACD1B0YJ81 288 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 KIF2AO00139 706 aaPredicted RBP15.22■□□□□ 0.03
NUP54-213ENST00000513352 KCNK1O00180 336 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 DLL1O00548 723 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 MATN3O15232 486 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 SIN3BO75182 1162 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 CD160O95971 181 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 RBP3P10745 1247 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 CCNB1P14635 433 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 COL9A1P20849 921 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 MMP13P45452 471 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 CCR3P51677 355 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 SATB1Q01826 763 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 ITKQ08881 620 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 SNX1Q13596 522 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 RFTN1Q14699 578 aaPredicted RBP15.22■□□□□ 0.03
NUP54-213ENST00000513352 INO80DQ53TQ3 878 aaPredicted RBP15.22■□□□□ 0.03
NUP54-213ENST00000513352 SLC45A4Q5BKX6 768 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 ATXN7L2Q5T6C5 722 aaPredicted RBP15.22■□□□□ 0.03
NUP54-213ENST00000513352 MARC1Q5VT66 337 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 PAPD7Q5XG87 772 aaKnown RBP15.22■□□□□ 0.03
NUP54-213ENST00000513352 HEATR6Q6AI08 1181 aaKnown RBP15.22■□□□□ 0.03
NUP54-213ENST00000513352 SYT13Q7L8C5 426 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 STK40Q8N2I9 435 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.22■□□□□ 0.03
NUP54-213ENST00000513352 TSTD1Q8NFU3 115 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 FRS2Q8WU20 508 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 C1orf54Q8WWF1 131 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 EXOC2Q96KP1 924 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 GABRG3Q99928 467 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 CEP41Q9BYV8 373 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 C10orf88Q9H8K7 445 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 POLMQ9NP87 494 aaPredicted RBP15.22■□□□□ 0.03
NUP54-213ENST00000513352 NT5MQ9NPB1 228 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 DLGAP2Q9P1A6 1054 aa15.22■□□□□ 0.03
NUP54-213ENST00000513352 BCCIPQ9P287 314 aaKnown RBP eCLIP15.22■□□□□ 0.03
NUP54-213ENST00000513352 CXorf51AA0A1B0GTR3 108 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 CES2O00748 559 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 FANCGO15287 622 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 LAMTOR5O43504 91 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 IGSF6O95976 241 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 CXCL12P48061 93 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 VASPP50552 380 aaPredicted RBP15.21■□□□□ 0.03
NUP54-213ENST00000513352 RENBPP51606 427 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 DGKEP52429 567 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms