RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 MYO19Q96H55 970 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 APOL2Q9BQE5 337 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 SLC39A8Q9C0K1 460 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 IL36AQ9UHA7 158 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 COL1A1P02452 1464 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 ABCC6O95255 1503 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 FAM205CA6NFA0 338 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 SYCE1LA8MT33 242 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 CST8O60676 142 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 WDR5P61964 334 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 RPS7P62081 194 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 ZNF211Q13398 564 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 CST9Q5W186 159 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 MBLAC2Q68D91 279 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 STOX1Q6ZVD7 989 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 MAML1Q92585 1016 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 MRPL38Q96DV4 380 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 POLR1BQ9H9Y6 1135 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 TXNRD2Q9NNW7 524 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 SNX7Q9UNH6 387 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 CCNB2O95067 398 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 LARGE1O95461 756 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 CYP11B1P15538 503 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 CARSP49589 748 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 HNRNPKP61978 463 aaKnown RBP eCLIP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 CSHL1Q14406 222 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 AP5B1Q2VPB7 878 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 PDSS1Q5T2R2 415 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 C4orf22Q6V702 233 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 CEP76Q8TAP6 659 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 CDX2Q99626 313 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 ZNF518BQ9C0D4 1074 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 BPIFA1Q9NP55 256 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 UVRAGQ9P2Y5 699 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 TUBGCP4Q9UGJ1 667 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 COLQQ9Y215 455 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 ATP8A1Q9Y2Q0 1164 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 DERAQ9Y315 318 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 TMEM150CB9EJG8 249 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 CDK14O94921 469 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 NR0B2Q15466 257 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 PGS1Q32NB8 556 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 LDLRAD1Q5T700 205 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 ZCCHC9Q8N567 271 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 ZNF366Q8N895 744 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 RNF39Q9H2S5 420 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 SMYD3Q9H7B4 428 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 ZNF556Q9HAH1 456 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 VPS4AQ9UN37 437 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 A0A0A6YYK5 440 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 H3BMM5 538 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 RAD51BO15315 384 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 SH3BGRLO75368 114 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 AMPD1P23109 780 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 SPRP35270 261 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 CCNG1P51959 295 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 SELENOVP59797 346 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 SMAD4Q13485 552 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 ANKRD20A4Q4UJ75 823 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 ATP13A5Q4VNC0 1218 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 ANKRD20A2Q5SQ80 823 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 ANKRD20A1Q5TYW2 823 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 KIAA0319Q5VV43 1072 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 RNF44Q7L0R7 432 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 NLRP9Q7RTR0 991 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 ARID3BQ8IVW6 561 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 IL31RAQ8NI17 732 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 PHF7Q9BWX1 381 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 OSBPL1AQ9BXW6 950 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 TTYH1Q9H313 450 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 EVLQ9UI08 416 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 TRIM33Q9UPN9 1127 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 SDC3O75056 442 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 CPSF4O95639 269 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 FNTAP49354 379 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 RUNX3Q13761 415 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 ZDHHC20Q5W0Z9 365 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 CRTC1Q6UUV9 634 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 PDCD7Q8N8D1 485 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 C7orf25Q9BPX7 421 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 EIF2AQ9BY44 585 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 NCKIPSDQ9NZQ3 722 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 GNPTGQ9UJJ9 305 aa9.33□□□□□ -0.92
LIMCH1-202ENST00000381753 HLA-DQA2P01906 255 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 PLEKP08567 350 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 PRKAR1AP10644 381 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 CXCR5P32302 372 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 CASP9P55211 416 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM83EQ2M2I3 478 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 TXNDC8Q6A555 127 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM180AQ6UWF9 173 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 STK40Q8N2I9 435 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 ZNF563Q8TA94 476 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 C1orf54Q8WWF1 131 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 TNFRSF10AO00220 468 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 ACSL3O95573 720 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM107AO95990 144 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 GRIA2P42262 883 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 216.9 ms