RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	YIR007W	P40566	764 aa		4.23	□□□□□ -1.73
LCB4	YOR171C	ATG36	P46983	293 aa		4.23	□□□□□ -1.73
LCB4	YOR171C	SPR28	Q04921	423 aa		4.23	□□□□□ -1.73
LCB4	YOR171C	IDI1	P15496	288 aa		4.22	□□□□□ -1.73
LCB4	YOR171C	DUR3	P33413	735 aa		4.22	□□□□□ -1.73
LCB4	YOR171C	YBR287W	P38355	427 aa		4.22	□□□□□ -1.73
LCB4	YOR171C	CIC1	P38779	376 aa	Known RBP	4.22	□□□□□ -1.73
LCB4	YOR171C	ACO2	P39533	789 aa		4.22	□□□□□ -1.73
LCB4	YOR171C	YER156C	P40093	338 aa	Known RBP	4.22	□□□□□ -1.73
LCB4	YOR171C	YMR265C	Q03508	461 aa	Known RBP	4.22	□□□□□ -1.73
LCB4	YOR171C	FLP1	P03870	423 aa		4.22	□□□□□ -1.73
LCB4	YOR171C	PYC2	P32327	1180 aa	Known RBP	4.22	□□□□□ -1.73
LCB4	YOR171C	INP54	Q08227	384 aa	Known RBP	4.22	□□□□□ -1.73
LCB4	YOR171C	GIN4	Q12263	1142 aa		4.22	□□□□□ -1.73
LCB4	YOR171C	SUB1	P54000	292 aa	Known RBP	4.21	□□□□□ -1.74
LCB4	YOR171C	RPP1A	P05318	106 aa	Predicted RBP	4.2	□□□□□ -1.74
LCB4	YOR171C	YHL008C	P38750	627 aa		4.2	□□□□□ -1.74
LCB4	YOR171C	PPT1	P53043	513 aa		4.2	□□□□□ -1.74
LCB4	YOR171C	CAF120	P53836	1060 aa		4.2	□□□□□ -1.74
LCB4	YOR171C	KRE33	P53914	1056 aa	Known RBP	4.2	□□□□□ -1.74
LCB4	YOR171C	VPS72	Q03388	795 aa		4.2	□□□□□ -1.74
LCB4	YOR171C	YDR461C-A	Q2V2P7	80 aa		4.2	□□□□□ -1.74
LCB4	YOR171C	FAA3	P39002	694 aa		4.2	□□□□□ -1.74
LCB4	YOR171C	RPS26A	P39938	119 aa	Known RBP	4.2	□□□□□ -1.74
LCB4	YOR171C	RPS26B	P39939	119 aa	Known RBP	4.2	□□□□□ -1.74
LCB4	YOR171C	UGA4	P32837	571 aa		4.19	□□□□□ -1.74
LCB4	YOR171C	PRK1	P40494	810 aa		4.19	□□□□□ -1.74
LCB4	YOR171C	YGR035C	P53222	116 aa		4.19	□□□□□ -1.74
LCB4	YOR171C	HEH2	Q03281	663 aa		4.19	□□□□□ -1.74
LCB4	YOR171C	MSH6	Q03834	1242 aa		4.19	□□□□□ -1.74
LCB4	YOR171C	TY1A-DR2	Q03964	440 aa	Known RBP	4.19	□□□□□ -1.74
LCB4	YOR171C	SYT1	Q06836	1226 aa		4.19	□□□□□ -1.74
LCB4	YOR171C	MRP10	O75012	95 aa		4.18	□□□□□ -1.74
LCB4	YOR171C	HXK1	P04806	485 aa	Known RBP	4.18	□□□□□ -1.74
LCB4	YOR171C	FPS1	P23900	669 aa		4.18	□□□□□ -1.74
LCB4	YOR171C	BRN1	P38170	754 aa		4.18	□□□□□ -1.74
LCB4	YOR171C	RPS0B	P46654	252 aa	Known RBP	4.18	□□□□□ -1.74
LCB4	YOR171C	LYS5	P50113	272 aa		4.18	□□□□□ -1.74
LCB4	YOR171C	YGR122W	P53272	402 aa		4.18	□□□□□ -1.74
LCB4	YOR171C	RTS3	P53289	263 aa		4.18	□□□□□ -1.74
LCB4	YOR171C	ADE12	P80210	433 aa	Known RBP	4.18	□□□□□ -1.74
LCB4	YOR171C	DAL4	Q04895	635 aa		4.18	□□□□□ -1.74
LCB4	YOR171C	YCS4	Q06156	1176 aa		4.18	□□□□□ -1.74
LCB4	YOR171C	OXR1	Q08952	273 aa		4.18	□□□□□ -1.74
LCB4	YOR171C	PRP40	P33203	583 aa	Known RBP	4.18	□□□□□ -1.74
LCB4	YOR171C	CEM1	P39525	442 aa		4.18	□□□□□ -1.74
LCB4	YOR171C	MET10	P39692	1035 aa		4.18	□□□□□ -1.74
LCB4	YOR171C	ALD3	P54114	506 aa		4.18	□□□□□ -1.74
LCB4	YOR171C	PUS1	Q12211	544 aa	Known RBP	4.18	□□□□□ -1.74
LCB4	YOR171C	FUS1	P11710	512 aa		4.17	□□□□□ -1.74
LCB4	YOR171C	CYC8	P14922	966 aa		4.17	□□□□□ -1.74
LCB4	YOR171C	RIM11	P38615	370 aa		4.17	□□□□□ -1.74
LCB4	YOR171C	NUT1	P53114	1132 aa		4.17	□□□□□ -1.74
LCB4	YOR171C	MON1	P53129	644 aa		4.17	□□□□□ -1.74
LCB4	YOR171C	FAR11	P53917	953 aa		4.17	□□□□□ -1.74
LCB4	YOR171C	SVF1	Q05515	481 aa		4.17	□□□□□ -1.74
LCB4	YOR171C	RSC2	Q06488	889 aa		4.17	□□□□□ -1.74
LCB4	YOR171C	MCM5	P29496	775 aa	Known RBP	4.16	□□□□□ -1.74
LCB4	YOR171C	TFA2	P36145	328 aa		4.16	□□□□□ -1.74
LCB4	YOR171C	SAP155	P43612	1002 aa		4.16	□□□□□ -1.74
LCB4	YOR171C	YJL181W	P46987	611 aa		4.16	□□□□□ -1.74
LCB4	YOR171C	TPO2	P53283	614 aa		4.16	□□□□□ -1.74
LCB4	YOR171C	CMR1	Q12510	522 aa	Known RBP	4.16	□□□□□ -1.74
LCB4	YOR171C	RAD2	P07276	1031 aa		4.15	□□□□□ -1.74
LCB4	YOR171C	ECM2	P38241	364 aa	Known RBP	4.15	□□□□□ -1.74
LCB4	YOR171C	MAG2	Q06436	670 aa	Known RBP	4.15	□□□□□ -1.74
LCB4	YOR171C	GLO4	Q12320	285 aa		4.15	□□□□□ -1.74
LCB4	YOR171C	HVG1	P0CE11	249 aa		4.15	□□□□□ -1.75
LCB4	YOR171C	SPC42	P36094	363 aa		4.15	□□□□□ -1.75
LCB4	YOR171C	AMN1	P38285	549 aa	Predicted RBP	4.15	□□□□□ -1.75
LCB4	YOR171C	INP51	P40559	946 aa	Known RBP	4.15	□□□□□ -1.75
LCB4	YOR171C	YPL109C	Q02981	657 aa		4.15	□□□□□ -1.75
LCB4	YOR171C	RMD1	Q03441	430 aa		4.15	□□□□□ -1.75
LCB4	YOR171C	JIP5	Q06214	492 aa	Predicted RBP	4.15	□□□□□ -1.75
LCB4	YOR171C	ESF1	Q06344	628 aa	Known RBP	4.15	□□□□□ -1.75
LCB4	YOR171C	OSW7	P43611	510 aa		4.14	□□□□□ -1.75
LCB4	YOR171C	BIO5	P53744	561 aa	Known RBP	4.14	□□□□□ -1.75
LCB4	YOR171C	ULP1	Q02724	621 aa		4.14	□□□□□ -1.75
LCB4	YOR171C	PMT7	Q06644	662 aa		4.14	□□□□□ -1.75
LCB4	YOR171C	PEP7	P32609	515 aa		4.13	□□□□□ -1.75
LCB4	YOR171C	EBP2	P36049	427 aa	Known RBP	4.13	□□□□□ -1.75
LCB4	YOR171C	ICP55	P40051	511 aa		4.13	□□□□□ -1.75
LCB4	YOR171C	YJR008W	P47085	338 aa		4.13	□□□□□ -1.75
LCB4	YOR171C	YAF9	P53930	226 aa		4.13	□□□□□ -1.75
LCB4	YOR171C	PDC5	P16467	563 aa	Known RBP	4.13	□□□□□ -1.75
LCB4	YOR171C	KAR2	P16474	682 aa	Known RBP	4.13	□□□□□ -1.75
LCB4	YOR171C	PRP5	P21372	849 aa	Predicted RBP	4.13	□□□□□ -1.75
LCB4	YOR171C	NPR1	P22211	790 aa		4.13	□□□□□ -1.75
LCB4	YOR171C	PRE9	P23638	258 aa	Known RBP	4.13	□□□□□ -1.75
LCB4	YOR171C	RVS167	P39743	482 aa	Known RBP	4.13	□□□□□ -1.75
LCB4	YOR171C	PIC2	P40035	300 aa		4.13	□□□□□ -1.75
LCB4	YOR171C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
LCB4	YOR171C	JJJ3	P47138	172 aa		4.13	□□□□□ -1.75
LCB4	YOR171C	DOS2	P54858	310 aa		4.13	□□□□□ -1.75
LCB4	YOR171C	SOG2	Q08817	791 aa		4.13	□□□□□ -1.75
LCB4	YOR171C	YTA7	P40340	1379 aa		4.12	□□□□□ -1.75
LCB4	YOR171C	GPM1	P00950	247 aa	Known RBP	4.12	□□□□□ -1.75
LCB4	YOR171C	YJR124C	P47159	448 aa		4.12	□□□□□ -1.75
LCB4	YOR171C	ADI1	Q03677	179 aa		4.12	□□□□□ -1.75
LCB4	YOR171C	MCD1	Q12158	566 aa		4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 10.6 ms