RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	YML119W	Q03208	357 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	HEH2	Q03281	663 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	ORM2	Q06144	216 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	MPC54	Q08550	464 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	FOB1	O13329	566 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	MER1	P16523	270 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	HIR2	P32480	875 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	GRX7	P38068	203 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	RXT2	P38255	430 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	OTU2	P38747	307 aa	Known RBP	5.62	□□□□□ -1.51
SEC39	YLR440C	BEM4	P39011	633 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	IRR1	P40541	1150 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	RAD17	P48581	401 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	YNL050C	P53952	270 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	ISA1	Q07821	250 aa	Predicted RBP	5.62	□□□□□ -1.51
SEC39	YLR440C	YOL098C	Q12496	1037 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	MRPL25	P23369	157 aa		5.61	□□□□□ -1.51
SEC39	YLR440C	KRR1	P25586	316 aa	Predicted RBP	5.61	□□□□□ -1.51
SEC39	YLR440C	MRE11	P32829	692 aa		5.61	□□□□□ -1.51
SEC39	YLR440C	YLF2	P38746	405 aa		5.61	□□□□□ -1.51
SEC39	YLR440C	VPS29	P38759	282 aa		5.61	□□□□□ -1.51
SEC39	YLR440C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	5.61	□□□□□ -1.51	not detected
SEC39	YLR440C	RNH1	Q04740	348 aa		5.61	□□□□□ -1.51
SEC39	YLR440C	YDR338C	Q05497	695 aa		5.61	□□□□□ -1.51
SEC39	YLR440C	GCN2	P15442	1659 aa		5.61	□□□□□ -1.51
SEC39	YLR440C	BCK1	Q01389	1478 aa		5.61	□□□□□ -1.51
SEC39	YLR440C	BUD14	P27637	709 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	ACP1	P32463	125 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	CHZ1	P40019	153 aa	Predicted RBP	5.6	□□□□□ -1.51
SEC39	YLR440C	YER034W	P40022	185 aa	Known RBP	5.6	□□□□□ -1.51
SEC39	YLR440C	MXR1	P40029	184 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	HOP2	P53187	214 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	HPC2	Q01448	625 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	SSK22	P25390	1331 aa	Predicted RBP	5.6	□□□□□ -1.51
SEC39	YLR440C	SPS1	P08458	490 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	HNM1	P19807	563 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	DLD1	P32891	587 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	GLO3	P38682	493 aa	Known RBP	5.6	□□□□□ -1.51
SEC39	YLR440C	APE4	P38821	490 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	RTT105	P40063	208 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	MAM1	P40065	302 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	PXR1	P53335	271 aa	Predicted RBP	5.6	□□□□□ -1.51
SEC39	YLR440C	SNZ1	Q03148	297 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	CWC21	Q03375	135 aa	Known RBP	5.6	□□□□□ -1.51
SEC39	YLR440C	DBP9	Q06218	594 aa	Known RBP	5.6	□□□□□ -1.51
SEC39	YLR440C	SPP382	Q06411	708 aa	Predicted RBP	5.6	□□□□□ -1.51
SEC39	YLR440C	YLH47	Q06493	454 aa		5.6	□□□□□ -1.51
SEC39	YLR440C	ACE2	P21192	770 aa		5.59	□□□□□ -1.51
SEC39	YLR440C	FAR1	P21268	830 aa		5.59	□□□□□ -1.51
SEC39	YLR440C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	5.59	□□□□□ -1.51	not detected
SEC39	YLR440C	ABZ1	P37254	787 aa	Predicted RBP	5.59	□□□□□ -1.51
SEC39	YLR440C	HSE1	P38753	452 aa		5.59	□□□□□ -1.51
SEC39	YLR440C	SET2	P46995	733 aa	Known RBP	5.59	□□□□□ -1.51
SEC39	YLR440C	ENP2	P48234	707 aa	Known RBP	5.59	□□□□□ -1.51
SEC39	YLR440C	VMS1	Q04311	632 aa	Known RBP	5.59	□□□□□ -1.51
SEC39	YLR440C	POB3	Q04636	552 aa	Known RBP	5.59	□□□□□ -1.51
SEC39	YLR440C	MDM38	Q08179	573 aa		5.59	□□□□□ -1.51
SEC39	YLR440C	HOM3	P10869	527 aa		5.59	□□□□□ -1.52
SEC39	YLR440C	REB1	P21538	810 aa		5.59	□□□□□ -1.52
SEC39	YLR440C	TIF3	P34167	436 aa	Known RBP	5.59	□□□□□ -1.52
SEC39	YLR440C	DOT6	P40059	670 aa	Known RBP	5.59	□□□□□ -1.52
SEC39	YLR440C	UBP10	P53874	792 aa	Predicted RBP	5.59	□□□□□ -1.52
SEC39	YLR440C	TFB4	Q12004	338 aa		5.59	□□□□□ -1.52
SEC39	YLR440C	DPS1	P04802	557 aa	Known RBP	5.58	□□□□□ -1.52
SEC39	YLR440C	MEF1	P25039	761 aa		5.58	□□□□□ -1.52
SEC39	YLR440C	AAD3	P25612	363 aa		5.58	□□□□□ -1.52
SEC39	YLR440C	PUP2	P32379	260 aa		5.58	□□□□□ -1.52
SEC39	YLR440C	YGL015C	P33199	130 aa		5.58	□□□□□ -1.52
SEC39	YLR440C	PXA1	P41909	870 aa		5.58	□□□□□ -1.52
SEC39	YLR440C	ITC1	P53125	1264 aa		5.58	□□□□□ -1.52
SEC39	YLR440C	ALG12	P53730	551 aa		5.58	□□□□□ -1.52
SEC39	YLR440C	SLX4	Q12098	748 aa		5.58	□□□□□ -1.52
SEC39	YLR440C	RAV1	P47104	1357 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	CDC3	P32457	520 aa	Known RBP	5.57	□□□□□ -1.52
SEC39	YLR440C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	5.57	□□□□□ -1.52	not detected
SEC39	YLR440C	DSF2	P38213	736 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	PET100	P38958	111 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	VPS41	P38959	992 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	IOC3	P43596	787 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	ACF4	P47129	309 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	YNR021W	P53723	404 aa	Known RBP	5.57	□□□□□ -1.52
SEC39	YLR440C	CAB1	Q04430	367 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	ATG38	Q05789	226 aa	Known RBP	5.57	□□□□□ -1.52
SEC39	YLR440C	TOM70	P07213	617 aa	Known RBP	5.57	□□□□□ -1.52
SEC39	YLR440C	CLB5	P30283	435 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	JNM1	P36224	373 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	YGR016W	P53209	190 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	RAD33	Q04231	177 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	ERB1	Q04660	807 aa	Known RBP	5.57	□□□□□ -1.52
SEC39	YLR440C	KAR5	Q04746	504 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	SVF1	Q05515	481 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	CSR1	Q06705	408 aa	Known RBP	5.57	□□□□□ -1.52
SEC39	YLR440C	SLK19	Q08581	821 aa	Known RBP	5.57	□□□□□ -1.52
SEC39	YLR440C	ENT1	Q12518	454 aa		5.57	□□□□□ -1.52
SEC39	YLR440C	TUF1	P02992	437 aa	Known RBP	5.56	□□□□□ -1.52
SEC39	YLR440C	MRPL32	P25348	183 aa		5.56	□□□□□ -1.52
SEC39	YLR440C	VPH1	P32563	840 aa	Known RBP	5.56	□□□□□ -1.52
SEC39	YLR440C	TTI1	P36097	1038 aa		5.56	□□□□□ -1.52
SEC39	YLR440C	CAJ1	P39101	391 aa		5.56	□□□□□ -1.52
SEC39	YLR440C	IAH1	P41734	238 aa		5.56	□□□□□ -1.52

Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms