RNA–Protein interactions for RNA: YIR009W

MSL1, Transcript of U2B component of U2 snRNP, yeast

Gene MSL1, Length 336 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSL1	YIR009W	RLF2	Q12495	606 aa		4.21	□□□□□ -1.74
MSL1	YIR009W	FUS1	P11710	512 aa		4.2	□□□□□ -1.74
MSL1	YIR009W	COQ2	P32378	372 aa		4.2	□□□□□ -1.74
MSL1	YIR009W	OMA1	P36163	345 aa		4.2	□□□□□ -1.74
MSL1	YIR009W	PAN5	P38787	379 aa		4.2	□□□□□ -1.74
MSL1	YIR009W	RAD55	P38953	406 aa		4.2	□□□□□ -1.74
MSL1	YIR009W	TIF6	Q12522	245 aa	Known RBP	4.2	□□□□□ -1.74
MSL1	YIR009W	FUR4	P05316	633 aa	Known RBP	4.19	□□□□□ -1.74
MSL1	YIR009W	SMC1	P32908	1225 aa		4.19	□□□□□ -1.74
MSL1	YIR009W	LEM3	P42838	414 aa		4.19	□□□□□ -1.74
MSL1	YIR009W	YLR122C	Q12312	125 aa		4.19	□□□□□ -1.74
MSL1	YIR009W	IRS4	P36115	615 aa	Known RBP	4.18	□□□□□ -1.74
MSL1	YIR009W	KAE1	P36132	386 aa		4.18	□□□□□ -1.74
MSL1	YIR009W	POL5	P39985	1022 aa	Known RBP	4.18	□□□□□ -1.74
MSL1	YIR009W	PSY2	P40164	858 aa		4.18	□□□□□ -1.74
MSL1	YIR009W	REC8	Q12188	680 aa		4.18	□□□□□ -1.74
MSL1	YIR009W	TRP3	P00937	484 aa		4.17	□□□□□ -1.74
MSL1	YIR009W	HVG1	P0CE11	249 aa		4.17	□□□□□ -1.74
MSL1	YIR009W	YKR073C	P36153	106 aa		4.17	□□□□□ -1.74
MSL1	YIR009W	SAF1	P38352	637 aa		4.17	□□□□□ -1.74
MSL1	YIR009W	GLT1	Q12680	2145 aa	Known RBP	4.17	□□□□□ -1.74
MSL1	YIR009W	NAM7	P30771	971 aa	Known RBP	4.16	□□□□□ -1.74
MSL1	YIR009W	AKR1	P39010	764 aa		4.16	□□□□□ -1.74
MSL1	YIR009W	YJR124C	P47159	448 aa		4.16	□□□□□ -1.74
MSL1	YIR009W	YNR065C	P53751	1116 aa		4.16	□□□□□ -1.74
MSL1	YIR009W	SPO71	Q03868	1245 aa		4.16	□□□□□ -1.74
MSL1	YIR009W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
MSL1	YIR009W	MED7	Q08278	222 aa		4.16	□□□□□ -1.74
MSL1	YIR009W	GLO4	Q12320	285 aa		4.16	□□□□□ -1.74
MSL1	YIR009W	PYC2	P32327	1180 aa	Known RBP	4.15	□□□□□ -1.75
MSL1	YIR009W	MAE1	P36013	669 aa	Known RBP	4.15	□□□□□ -1.75
MSL1	YIR009W	NCE103	P53615	221 aa		4.15	□□□□□ -1.75
MSL1	YIR009W	HAS1	Q03532	505 aa	Known RBP	4.15	□□□□□ -1.75
MSL1	YIR009W	ELG1	Q12050	791 aa		4.15	□□□□□ -1.75
MSL1	YIR009W	CHS2	P14180	963 aa		4.14	□□□□□ -1.75
MSL1	YIR009W	NEO1	P40527	1151 aa		4.14	□□□□□ -1.75
MSL1	YIR009W	CTR9	P89105	1077 aa		4.14	□□□□□ -1.75
MSL1	YIR009W	ERS1	P17261	260 aa		4.13	□□□□□ -1.75
MSL1	YIR009W	YGR130C	P53278	816 aa		4.13	□□□□□ -1.75
MSL1	YIR009W	KAR5	Q04746	504 aa		4.13	□□□□□ -1.75
MSL1	YIR009W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	not detected
MSL1	YIR009W	TOS1	P38288	455 aa		4.12	□□□□□ -1.75
MSL1	YIR009W	GLO3	P38682	493 aa	Known RBP	4.12	□□□□□ -1.75
MSL1	YIR009W	QDR1	P40475	563 aa		4.12	□□□□□ -1.75
MSL1	YIR009W	FET4	P40988	552 aa		4.12	□□□□□ -1.75
MSL1	YIR009W	CTH1	P47976	325 aa		4.12	□□□□□ -1.75
MSL1	YIR009W	RSC4	Q02206	625 aa		4.12	□□□□□ -1.75
MSL1	YIR009W	COB	P00163	385 aa		4.11	□□□□□ -1.75
MSL1	YIR009W	SPO74	P45819	413 aa		4.11	□□□□□ -1.75
MSL1	YIR009W	KIP3	P53086	805 aa	Known RBP	4.11	□□□□□ -1.75
MSL1	YIR009W	ATG1	P53104	897 aa		4.11	□□□□□ -1.75
MSL1	YIR009W	UFD2	P54860	961 aa		4.11	□□□□□ -1.75
MSL1	YIR009W	RPL34A	P87262	121 aa	Predicted RBP	4.11	□□□□□ -1.75
MSL1	YIR009W	CYC7	P00045	113 aa		4.1	□□□□□ -1.75
MSL1	YIR009W	LIP5	P32875	414 aa		4.1	□□□□□ -1.75
MSL1	YIR009W	ACF4	P47129	309 aa		4.1	□□□□□ -1.75
MSL1	YIR009W	BRE4	Q07660	1125 aa		4.1	□□□□□ -1.75
MSL1	YIR009W	MSB1	P21339	1137 aa	Known RBP	4.09	□□□□□ -1.75
MSL1	YIR009W	DUR3	P33413	735 aa		4.09	□□□□□ -1.75
MSL1	YIR009W	RIM11	P38615	370 aa		4.09	□□□□□ -1.75
MSL1	YIR009W	FAR11	P53917	953 aa		4.09	□□□□□ -1.75
MSL1	YIR009W	MAG2	Q06436	670 aa	Known RBP	4.09	□□□□□ -1.75
MSL1	YIR009W	TRS120	Q04183	1289 aa		4.08	□□□□□ -1.76
MSL1	YIR009W	GIC2	Q06648	383 aa		4.08	□□□□□ -1.76
MSL1	YIR009W	MNL2	Q12205	849 aa		4.08	□□□□□ -1.76
MSL1	YIR009W	CMR1	Q12510	522 aa	Known RBP	4.08	□□□□□ -1.76
MSL1	YIR009W	TRL1	P09880	827 aa	Known RBP	4.07	□□□□□ -1.76
MSL1	YIR009W	SSA1	P10591	642 aa	Known RBP	4.07	□□□□□ -1.76
MSL1	YIR009W	PRP5	P21372	849 aa	Predicted RBP	4.07	□□□□□ -1.76
MSL1	YIR009W	NPR1	P22211	790 aa		4.07	□□□□□ -1.76
MSL1	YIR009W	IRC24	P40580	263 aa		4.07	□□□□□ -1.76
MSL1	YIR009W	YNL011C	P53980	444 aa		4.07	□□□□□ -1.76
MSL1	YIR009W	MSH6	Q03834	1242 aa		4.07	□□□□□ -1.76
MSL1	YIR009W	YIG1	Q08956	461 aa		4.07	□□□□□ -1.76
MSL1	YIR009W	YOR223W	Q12015	292 aa		4.07	□□□□□ -1.76
MSL1	YIR009W	AVT1	P47082	602 aa		4.06	□□□□□ -1.76
MSL1	YIR009W	GCV1	P48015	400 aa		4.06	□□□□□ -1.76
MSL1	YIR009W	YMR074C	Q04773	145 aa		4.06	□□□□□ -1.76
MSL1	YIR009W	HTS1	P07263	546 aa	Known RBP	4.05	□□□□□ -1.76
MSL1	YIR009W	GPT2	P36148	743 aa		4.05	□□□□□ -1.76
MSL1	YIR009W	SEA4	P38164	1038 aa		4.05	□□□□□ -1.76
MSL1	YIR009W	CDC55	Q00362	526 aa		4.05	□□□□□ -1.76
MSL1	YIR009W	BSC2	Q05611	235 aa		4.05	□□□□□ -1.76
MSL1	YIR009W	FLP1	P03870	423 aa		4.04	□□□□□ -1.76
MSL1	YIR009W	GCD1	P09032	578 aa	Predicted RBP	4.04	□□□□□ -1.76
MSL1	YIR009W	CDC3	P32457	520 aa	Known RBP	4.04	□□□□□ -1.76
MSL1	YIR009W	ECM2	P38241	364 aa	Known RBP	4.04	□□□□□ -1.76
MSL1	YIR009W	SAP155	P43612	1002 aa		4.04	□□□□□ -1.76
MSL1	YIR009W	DOT1	Q04089	582 aa	Known RBP	4.04	□□□□□ -1.76
MSL1	YIR009W	YLL054C	Q12244	843 aa		4.04	□□□□□ -1.76
MSL1	YIR009W	GRS1	P38088	690 aa	Known RBP	4.03	□□□□□ -1.76
MSL1	YIR009W	YHL008C	P38750	627 aa		4.03	□□□□□ -1.76
MSL1	YIR009W	ERP5	P38819	212 aa		4.03	□□□□□ -1.76
MSL1	YIR009W	MMM1	P41800	426 aa		4.03	□□□□□ -1.76
MSL1	YIR009W	MDJ2	P42834	146 aa		4.03	□□□□□ -1.76
MSL1	YIR009W	SDH1	Q00711	640 aa		4.03	□□□□□ -1.76
MSL1	YIR009W	MEC3	Q02574	474 aa		4.03	□□□□□ -1.76
MSL1	YIR009W	AOS1	Q06624	347 aa		4.03	□□□□□ -1.76
MSL1	YIR009W	ELM1	P32801	640 aa		4.02	□□□□□ -1.77
MSL1	YIR009W	WHI3	P34761	661 aa	Known RBP	4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms