RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	RPC31	P17890	251 aa		5.05	□□□□□ -1.6
UBP6	YFR010W	KAP122	P32767	1081 aa		5.05	□□□□□ -1.6
UBP6	YFR010W	MFT1	P33441	392 aa	Known RBP	5.05	□□□□□ -1.6
UBP6	YFR010W	QDR2	P40474	542 aa		5.05	□□□□□ -1.6
UBP6	YFR010W	SKP1	P52286	194 aa		5.05	□□□□□ -1.6
UBP6	YFR010W	CUS1	Q02554	436 aa	Predicted RBP	5.05	□□□□□ -1.6
UBP6	YFR010W	ECM16	Q04217	1267 aa	Known RBP	5.05	□□□□□ -1.6
UBP6	YFR010W	PUN1	Q06991	263 aa		5.05	□□□□□ -1.6
UBP6	YFR010W	NHA1	Q99271	985 aa		5.05	□□□□□ -1.6
UBP6	YFR010W	CIT2	P08679	460 aa		5.04	□□□□□ -1.6
UBP6	YFR010W	DAL5	P15365	543 aa		5.04	□□□□□ -1.6
UBP6	YFR010W	ATE1	P16639	503 aa		5.04	□□□□□ -1.6
UBP6	YFR010W	MRPL33	P20084	86 aa		5.04	□□□□□ -1.6
UBP6	YFR010W	GRX4	P32642	244 aa		5.04	□□□□□ -1.6
UBP6	YFR010W	YBR197C	P38306	217 aa		5.04	□□□□□ -1.6
UBP6	YFR010W	DNM1	P54861	757 aa		5.04	□□□□□ -1.6
UBP6	YFR010W	MAG2	Q06436	670 aa	Known RBP	5.04	□□□□□ -1.6
UBP6	YFR010W	TAF13	P11747	167 aa		5.03	□□□□□ -1.6
UBP6	YFR010W	KAR1	P11927	433 aa		5.03	□□□□□ -1.6
UBP6	YFR010W	TPS3	P38426	1054 aa	Known RBP	5.03	□□□□□ -1.6
UBP6	YFR010W	CWC15	Q03772	175 aa	Known RBP	5.03	□□□□□ -1.6
UBP6	YFR010W	SRS2	P12954	1174 aa		5.02	□□□□□ -1.61
UBP6	YFR010W	PDC5	P16467	563 aa	Known RBP	5.02	□□□□□ -1.61
UBP6	YFR010W	KNS1	P32350	737 aa	Predicted RBP	5.02	□□□□□ -1.61
UBP6	YFR010W	ISC10	P32645	267 aa		5.02	□□□□□ -1.61
UBP6	YFR010W	SBE2	P42223	864 aa	Known RBP	5.02	□□□□□ -1.61
UBP6	YFR010W	POL32	P47110	350 aa		5.02	□□□□□ -1.61
UBP6	YFR010W	OYE2	Q03558	400 aa	Known RBP	5.02	□□□□□ -1.61
UBP6	YFR010W	POB3	Q04636	552 aa	Known RBP	5.02	□□□□□ -1.61
UBP6	YFR010W	MSC6	Q08818	692 aa	Known RBP	5.02	□□□□□ -1.61
UBP6	YFR010W	NKP1	Q12493	238 aa		5.02	□□□□□ -1.61
UBP6	YFR010W	YBL113C	Q7M4S9	792 aa		5.02	□□□□□ -1.61
UBP6	YFR010W	VMA3	P25515	160 aa		5.02	□□□□□ -1.61
UBP6	YFR010W	SRP40	P32583	406 aa	Predicted RBP	5.02	□□□□□ -1.61
UBP6	YFR010W	NCL1	P38205	684 aa	Known RBP	5.02	□□□□□ -1.61
UBP6	YFR010W	CEF1	Q03654	590 aa	Predicted RBP	5.02	□□□□□ -1.61
UBP6	YFR010W	COG4	Q06096	861 aa		5.02	□□□□□ -1.61
UBP6	YFR010W	SSF2	Q12153	453 aa	Predicted RBP	5.02	□□□□□ -1.61
UBP6	YFR010W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	5.01	□□□□□ -1.61	not detected
UBP6	YFR010W	YKL091C	P33324	310 aa	Known RBP	5.01	□□□□□ -1.61
UBP6	YFR010W	HOS4	P40480	1083 aa		5.01	□□□□□ -1.61
UBP6	YFR010W	IOC3	P43596	787 aa		5.01	□□□□□ -1.61
UBP6	YFR010W	ESF2	P53743	316 aa	Known RBP	5.01	□□□□□ -1.61
UBP6	YFR010W	YMR187C	Q03236	431 aa		5.01	□□□□□ -1.61
UBP6	YFR010W	HEH2	Q03281	663 aa		5.01	□□□□□ -1.61
UBP6	YFR010W	JIP5	Q06214	492 aa	Predicted RBP	5.01	□□□□□ -1.61
UBP6	YFR010W	APM2	P38700	605 aa		5	□□□□□ -1.61
UBP6	YFR010W	DYS1	P38791	387 aa		5	□□□□□ -1.61
UBP6	YFR010W	YGL081W	P53156	320 aa		5	□□□□□ -1.61
UBP6	YFR010W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	5	□□□□□ -1.61	not detected
UBP6	YFR010W	MEH1	Q02205	184 aa		5	□□□□□ -1.61
UBP6	YFR010W	NSE3	Q05541	303 aa		5	□□□□□ -1.61
UBP6	YFR010W	PNP1	Q05788	311 aa		5	□□□□□ -1.61
UBP6	YFR010W	TDA6	Q06466	467 aa		5	□□□□□ -1.61
UBP6	YFR010W	PWP2	P25635	923 aa	Known RBP	4.99	□□□□□ -1.61
UBP6	YFR010W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.99	□□□□□ -1.61	not detected
UBP6	YFR010W	SEC8	P32855	1065 aa		4.99	□□□□□ -1.61
UBP6	YFR010W	BSD2	P38356	321 aa		4.99	□□□□□ -1.61
UBP6	YFR010W	SKN7	P38889	622 aa		4.99	□□□□□ -1.61
UBP6	YFR010W	IES1	P43579	692 aa		4.99	□□□□□ -1.61
UBP6	YFR010W	YNR014W	P53719	212 aa		4.99	□□□□□ -1.61
UBP6	YFR010W	YNR040W	P53736	256 aa		4.99	□□□□□ -1.61
UBP6	YFR010W	YOR296W	Q08748	1289 aa		4.99	□□□□□ -1.61
UBP6	YFR010W	SEC6	P32844	805 aa		4.98	□□□□□ -1.61
UBP6	YFR010W	NFU1	P32860	256 aa		4.98	□□□□□ -1.61
UBP6	YFR010W	BLI1	P35727	113 aa		4.98	□□□□□ -1.61
UBP6	YFR010W	VPS24	P36095	224 aa	Known RBP	4.98	□□□□□ -1.61
UBP6	YFR010W	ENP1	P38333	483 aa	Known RBP	4.98	□□□□□ -1.61
UBP6	YFR010W	ERP5	P38819	212 aa		4.98	□□□□□ -1.61
UBP6	YFR010W	PRK1	P40494	810 aa		4.98	□□□□□ -1.61
UBP6	YFR010W	KAR5	Q04746	504 aa		4.98	□□□□□ -1.61
UBP6	YFR010W	ENT2	Q05785	613 aa		4.98	□□□□□ -1.61
UBP6	YFR010W	ERP4	Q12450	207 aa		4.98	□□□□□ -1.61
UBP6	YFR010W	LDH1	P38139	375 aa		4.97	□□□□□ -1.61
UBP6	YFR010W	FUI1	P38196	639 aa		4.97	□□□□□ -1.61
UBP6	YFR010W	VAC8	P39968	578 aa		4.97	□□□□□ -1.61
UBP6	YFR010W	ITC1	P53125	1264 aa		4.97	□□□□□ -1.61
UBP6	YFR010W	SVL3	Q03088	825 aa	Known RBP	4.97	□□□□□ -1.61
UBP6	YFR010W	PSK2	Q08217	1101 aa		4.97	□□□□□ -1.61
UBP6	YFR010W	IDI1	P15496	288 aa		4.97	□□□□□ -1.61
UBP6	YFR010W	CAB3	P36076	571 aa		4.97	□□□□□ -1.61
UBP6	YFR010W	GRX7	P38068	203 aa		4.97	□□□□□ -1.61
UBP6	YFR010W	MGE1	P38523	228 aa		4.97	□□□□□ -1.61
UBP6	YFR010W	ALD3	P54114	506 aa		4.97	□□□□□ -1.61
UBP6	YFR010W	RPN4	Q03465	531 aa		4.97	□□□□□ -1.61
UBP6	YFR010W	YGR161W-C	Q3E744	92 aa		4.97	□□□□□ -1.61
UBP6	YFR010W	THS1	P04801	734 aa	Known RBP	4.96	□□□□□ -1.62
UBP6	YFR010W	KTR2	P33550	425 aa		4.96	□□□□□ -1.62
UBP6	YFR010W	DEF1	P35732	738 aa	Known RBP	4.96	□□□□□ -1.62
UBP6	YFR010W	BOI1	P38041	980 aa	Known RBP	4.96	□□□□□ -1.62
UBP6	YFR010W	GIP1	P38229	639 aa		4.96	□□□□□ -1.62
UBP6	YFR010W	PPX1	P38698	397 aa		4.96	□□□□□ -1.62
UBP6	YFR010W	YHL050C	P38721	697 aa		4.96	□□□□□ -1.62
UBP6	YFR010W	YHR219W	P38900	624 aa		4.96	□□□□□ -1.62
UBP6	YFR010W	BUD6	P41697	788 aa		4.96	□□□□□ -1.62
UBP6	YFR010W	WHI5	Q12416	295 aa		4.96	□□□□□ -1.62
UBP6	YFR010W	OPI1	P21957	404 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	RPB10	P22139	70 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	MSN1	P22148	382 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	TRX2	P22803	104 aa	Known RBP	4.95	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 27.7 ms