RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W PRP42Q03776 544 aaKnown RBP7.27□□□□□ -1.25
RPN11YFR004W SAC3P46674 1301 aa7.27□□□□□ -1.25
RPN11YFR004W EAF7P53911 425 aaKnown RBP7.26□□□□□ -1.25
RPN11YFR004W DNM1P54861 757 aa7.26□□□□□ -1.25
RPN11YFR004W YOL057WQ08225 711 aa7.26□□□□□ -1.25
RPN11YFR004W SWI1P09547 1314 aa7.26□□□□□ -1.25
RPN11YFR004W ILV3P39522 585 aaKnown RBP7.25□□□□□ -1.25
RPN11YFR004W GSM1P42950 618 aa7.25□□□□□ -1.25
RPN11YFR004W YJR008WP47085 338 aa7.25□□□□□ -1.25
RPN11YFR004W GYP7P48365 746 aa7.25□□□□□ -1.25
RPN11YFR004W YGR273CP53329 174 aa7.25□□□□□ -1.25
RPN11YFR004W BMT6Q12291 365 aa7.25□□□□□ -1.25
RPN11YFR004W YPR117WQ06116 2489 aa7.24□□□□□ -1.25
RPN11YFR004W SLX8P40072 274 aa7.24□□□□□ -1.25
RPN11YFR004W MTC3P53077 123 aa7.24□□□□□ -1.25
RPN11YFR004W DUR1,2P32528 1835 aaKnown RBP7.23□□□□□ -1.25
RPN11YFR004W MGM1P32266 881 aa7.23□□□□□ -1.25
RPN11YFR004W BRL1P38770 471 aa7.23□□□□□ -1.25
RPN11YFR004W SOL3P38858 249 aa7.23□□□□□ -1.25
RPN11YFR004W BIM1P40013 344 aa7.23□□□□□ -1.25
RPN11YFR004W CST6P40535 587 aa7.23□□□□□ -1.25
RPN11YFR004W YIR014WP40570 242 aa7.23□□□□□ -1.25
RPN11YFR004W SRT1Q03175 343 aa7.23□□□□□ -1.25
RPN11YFR004W ARG82P07250 355 aa7.22□□□□□ -1.25
RPN11YFR004W GAL2P13181 574 aa7.22□□□□□ -1.25
RPN11YFR004W ASH1P34233 588 aa7.22□□□□□ -1.25
RPN11YFR004W NIT1P40447 199 aa7.22□□□□□ -1.25
RPN11YFR004W YLR225CQ05948 407 aaKnown RBP7.22□□□□□ -1.25
RPN11YFR004W SGD1Q06132 899 aa7.22□□□□□ -1.25
RPN11YFR004W YLR326WQ06170 240 aaKnown RBP7.22□□□□□ -1.25
RPN11YFR004W TOS4Q06266 489 aa7.22□□□□□ -1.25
RPN11YFR004W YDR306CQ06640 478 aa7.22□□□□□ -1.25
RPN11YFR004W THI3Q07471 609 aa7.22□□□□□ -1.25
RPN11YFR004W ACK1Q07622 623 aaPredicted RBP7.22□□□□□ -1.25
RPN11YFR004W TAO3P40468 2376 aa7.22□□□□□ -1.25
RPN11YFR004W CLC1P17891 233 aa7.21□□□□□ -1.26
RPN11YFR004W RPS7AP26786 190 aaKnown RBP7.21□□□□□ -1.26
RPN11YFR004W PML39Q03760 334 aa7.21□□□□□ -1.26
RPN11YFR004W CSI1Q04368 295 aa7.21□□□□□ -1.26
RPN11YFR004W AI4P03878 556 aa7.2□□□□□ -1.26
RPN11YFR004W MPH3P0CE00 602 aa7.2□□□□□ -1.26
RPN11YFR004W PCT1P13259 424 aa7.2□□□□□ -1.26
RPN11YFR004W LCB1P25045 558 aaKnown RBP7.2□□□□□ -1.26
RPN11YFR004W PSE1P32337 1089 aaKnown RBP7.2□□□□□ -1.26
RPN11YFR004W NGR1P32831 672 aaKnown RBP7.2□□□□□ -1.26
RPN11YFR004W ATG32P40458 529 aa7.2□□□□□ -1.26
RPN11YFR004W SPR3P41901 512 aa7.2□□□□□ -1.26
RPN11YFR004W CSN12P47130 423 aa7.2□□□□□ -1.26
RPN11YFR004W ITC1P53125 1264 aa7.2□□□□□ -1.26
RPN11YFR004W IRC4Q03036 179 aa7.2□□□□□ -1.26
RPN11YFR004W SAP30P38429 201 aa7.19□□□□□ -1.26
RPN11YFR004W YNG2P38806 282 aaKnown RBP7.19□□□□□ -1.26
RPN11YFR004W DJP1P40564 432 aa7.19□□□□□ -1.26
RPN11YFR004W YPP1P46951 817 aa7.19□□□□□ -1.26
RPN11YFR004W SPO1P53541 631 aa7.19□□□□□ -1.26
RPN11YFR004W YDL129WQ07555 291 aa7.19□□□□□ -1.26
RPN11YFR004W WRS1Q12109 432 aaKnown RBP7.19□□□□□ -1.26
RPN11YFR004W KTR1P27810 393 aaKnown RBP7.18□□□□□ -1.26
RPN11YFR004W NUP133P36161 1157 aa7.18□□□□□ -1.26
RPN11YFR004W YGR122WP53272 402 aa7.18□□□□□ -1.26
RPN11YFR004W YVH1Q02256 364 aaKnown RBP7.18□□□□□ -1.26
RPN11YFR004W PSF3Q12146 194 aa7.18□□□□□ -1.26
RPN11YFR004W FBP1P09201 348 aa7.17□□□□□ -1.26
RPN11YFR004W PAH1P32567 862 aa7.17□□□□□ -1.26
RPN11YFR004W YJL007CP47080 104 aa7.17□□□□□ -1.26
RPN11YFR004W MTC5Q03897 1148 aa7.17□□□□□ -1.26
RPN11YFR004W NKP2Q06162 153 aa7.17□□□□□ -1.26
RPN11YFR004W PSH1Q12161 406 aa7.17□□□□□ -1.26
RPN11YFR004W GIN4Q12263 1142 aa7.17□□□□□ -1.26
RPN11YFR004W ADR1P07248 1323 aa7.17□□□□□ -1.26
RPN11YFR004W FLO1P32768 1537 aa7.17□□□□□ -1.26
RPN11YFR004W RAD24P32641 659 aa7.16□□□□□ -1.26
RPN11YFR004W NMD2P38798 1089 aaKnown RBP7.16□□□□□ -1.26
RPN11YFR004W JJJ2P46997 583 aa7.16□□□□□ -1.26
RPN11YFR004W SRC1Q03707 834 aa7.16□□□□□ -1.26
RPN11YFR004W PPM2Q08282 695 aa7.16□□□□□ -1.26
RPN11YFR004W KEX1P09620 729 aa7.15□□□□□ -1.26
RPN11YFR004W MRP7P12687 371 aa7.15□□□□□ -1.26
RPN11YFR004W PFK2P16862 959 aaKnown RBP RIP-Chip data7.15□□□□□ -1.26not detected
RPN11YFR004W SNF7P39929 240 aaKnown RBP7.15□□□□□ -1.26
RPN11YFR004W NUG1P40010 520 aaKnown RBP7.15□□□□□ -1.26
RPN11YFR004W CLA4P48562 842 aa7.15□□□□□ -1.26
RPN11YFR004W ULP1Q02724 621 aa7.15□□□□□ -1.26
RPN11YFR004W RAD50P12753 1312 aa7.15□□□□□ -1.26
RPN11YFR004W RFC1P38630 861 aaKnown RBP7.14□□□□□ -1.27
RPN11YFR004W PSF2P40359 213 aa7.14□□□□□ -1.27
RPN11YFR004W PEX29Q03370 554 aa7.14□□□□□ -1.27
RPN11YFR004W ROX1P25042 368 aa7.13□□□□□ -1.27
RPN11YFR004W ERG7P38604 731 aa7.13□□□□□ -1.27
RPN11YFR004W KIC1P38692 1080 aa7.13□□□□□ -1.27
RPN11YFR004W KEL1P38853 1164 aaKnown RBP7.13□□□□□ -1.27
RPN11YFR004W MID1P41821 548 aa7.13□□□□□ -1.27
RPN11YFR004W ECM16Q04217 1267 aaKnown RBP7.13□□□□□ -1.27
RPN11YFR004W ERG12P07277 443 aa7.12□□□□□ -1.27
RPN11YFR004W RPS19AP07280 144 aaKnown RBP7.12□□□□□ -1.27
RPN11YFR004W RPS19BP07281 144 aaPredicted RBP7.12□□□□□ -1.27
RPN11YFR004W RAD53P22216 821 aa7.12□□□□□ -1.27
RPN11YFR004W SWC3P31376 625 aa7.12□□□□□ -1.27
RPN11YFR004W TPS3P38426 1054 aaKnown RBP7.12□□□□□ -1.27
RPN11YFR004W NET1P47035 1189 aa7.12□□□□□ -1.27
Retrieved 100 of 5,963 RNA–protein pairs in 19.1 ms