RNA–Protein interactions for RNA: YDR312W

SSF2, Transcript of Protein required for ribosomal large subunit maturation, yeast

Gene SSF2, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSF2	YDR312W	TY4A-H	Q6Q5P6	413 aa		4.75	□□□□□ -1.65
SSF2	YDR312W	FUS1	P11710	512 aa		4.74	□□□□□ -1.65
SSF2	YDR312W	SFA1	P32771	386 aa		4.74	□□□□□ -1.65
SSF2	YDR312W	GUP1	P53154	560 aa		4.74	□□□□□ -1.65
SSF2	YDR312W	SOG2	Q08817	791 aa		4.74	□□□□□ -1.65
SSF2	YDR312W	SBP1	P10080	294 aa	Known RBP	4.73	□□□□□ -1.65
SSF2	YDR312W	SAC7	P17121	654 aa		4.73	□□□□□ -1.65
SSF2	YDR312W	TFA2	P36145	328 aa		4.73	□□□□□ -1.65
SSF2	YDR312W	LEM3	P42838	414 aa		4.73	□□□□□ -1.65
SSF2	YDR312W	ACF4	P47129	309 aa		4.72	□□□□□ -1.65
SSF2	YDR312W	UFD2	P54860	961 aa		4.72	□□□□□ -1.65
SSF2	YDR312W	TRL1	P09880	827 aa	Known RBP	4.71	□□□□□ -1.66
SSF2	YDR312W	PYC2	P32327	1180 aa	Known RBP	4.71	□□□□□ -1.66
SSF2	YDR312W	PAN5	P38787	379 aa		4.71	□□□□□ -1.66
SSF2	YDR312W	ARI1	P53111	347 aa	Known RBP	4.71	□□□□□ -1.66
SSF2	YDR312W	DSE4	P53753	1117 aa		4.71	□□□□□ -1.66
SSF2	YDR312W	RSC4	Q02206	625 aa		4.7	□□□□□ -1.66
SSF2	YDR312W	GLO4	Q12320	285 aa		4.7	□□□□□ -1.66
SSF2	YDR312W	HAT1	Q12341	374 aa		4.7	□□□□□ -1.66
SSF2	YDR312W	TY1A-NL1	Q12391	440 aa	Known RBP	4.7	□□□□□ -1.66
SSF2	YDR312W	HVG1	P0CE11	249 aa		4.69	□□□□□ -1.66
SSF2	YDR312W	RSC6	P25632	483 aa		4.69	□□□□□ -1.66
SSF2	YDR312W	PGM1	P33401	570 aa	Known RBP	4.69	□□□□□ -1.66
SSF2	YDR312W	YJR124C	P47159	448 aa		4.69	□□□□□ -1.66
SSF2	YDR312W	TRS120	Q04183	1289 aa		4.69	□□□□□ -1.66
SSF2	YDR312W	GRS1	P38088	690 aa	Known RBP	4.68	□□□□□ -1.66
SSF2	YDR312W	ERP5	P38819	212 aa		4.68	□□□□□ -1.66
SSF2	YDR312W	POL5	P39985	1022 aa	Known RBP	4.68	□□□□□ -1.66
SSF2	YDR312W	YNR065C	P53751	1116 aa		4.68	□□□□□ -1.66
SSF2	YDR312W	CTR9	P89105	1077 aa		4.68	□□□□□ -1.66
SSF2	YDR312W	INO80	P53115	1489 aa		4.68	□□□□□ -1.66
SSF2	YDR312W	NEO1	P40527	1151 aa		4.67	□□□□□ -1.66
SSF2	YDR312W	MDJ2	P42834	146 aa		4.67	□□□□□ -1.66
SSF2	YDR312W	YNL011C	P53980	444 aa		4.67	□□□□□ -1.66
SSF2	YDR312W	SPO71	Q03868	1245 aa		4.67	□□□□□ -1.66
SSF2	YDR312W	MNL2	Q12205	849 aa		4.67	□□□□□ -1.66
SSF2	YDR312W	YBL113C	Q7M4S9	792 aa		4.67	□□□□□ -1.66
SSF2	YDR312W	HAS1	Q03532	505 aa	Known RBP	4.66	□□□□□ -1.66
SSF2	YDR312W	COB	P00163	385 aa		4.65	□□□□□ -1.66
SSF2	YDR312W	COQ2	P32378	372 aa		4.65	□□□□□ -1.66
SSF2	YDR312W	MAE1	P36013	669 aa	Known RBP	4.65	□□□□□ -1.66
SSF2	YDR312W	SSF1	P38789	453 aa	Predicted RBP	4.65	□□□□□ -1.66
SSF2	YDR312W	FET4	P40988	552 aa		4.65	□□□□□ -1.66
SSF2	YDR312W	ECM2	P38241	364 aa	Known RBP	4.65	□□□□□ -1.67
SSF2	YDR312W	CDC55	Q00362	526 aa		4.65	□□□□□ -1.67
SSF2	YDR312W	ELG1	Q12050	791 aa		4.65	□□□□□ -1.67
SSF2	YDR312W	REC8	Q12188	680 aa		4.65	□□□□□ -1.67
SSF2	YDR312W	YML020W	Q03722	664 aa		4.64	□□□□□ -1.67
SSF2	YDR312W	BSC2	Q05611	235 aa		4.64	□□□□□ -1.67
SSF2	YDR312W	FRT1	Q99332	602 aa		4.64	□□□□□ -1.67
SSF2	YDR312W	ERS1	P17261	260 aa		4.63	□□□□□ -1.67
SSF2	YDR312W	DUR3	P33413	735 aa		4.63	□□□□□ -1.67
SSF2	YDR312W	KAE1	P36132	386 aa		4.63	□□□□□ -1.67
SSF2	YDR312W	SAF1	P38352	637 aa		4.63	□□□□□ -1.67
SSF2	YDR312W	RIM11	P38615	370 aa		4.63	□□□□□ -1.67
SSF2	YDR312W	NCE103	P53615	221 aa		4.63	□□□□□ -1.67
SSF2	YDR312W	ALO1	P54783	526 aa	Known RBP	4.63	□□□□□ -1.67
SSF2	YDR312W	MSH6	Q03834	1242 aa		4.63	□□□□□ -1.67
SSF2	YDR312W	NUT2	Q06213	157 aa		4.63	□□□□□ -1.67
SSF2	YDR312W	YLR122C	Q12312	125 aa		4.63	□□□□□ -1.67
SSF2	YDR312W	CMR1	Q12510	522 aa	Known RBP	4.63	□□□□□ -1.67
SSF2	YDR312W	FLP1	P03870	423 aa		4.62	□□□□□ -1.67
SSF2	YDR312W	NPR1	P22211	790 aa		4.62	□□□□□ -1.67
SSF2	YDR312W	NAM7	P30771	971 aa	Known RBP	4.62	□□□□□ -1.67
SSF2	YDR312W	YHL008C	P38750	627 aa		4.62	□□□□□ -1.67
SSF2	YDR312W	FAR11	P53917	953 aa		4.62	□□□□□ -1.67
SSF2	YDR312W	GPI13	Q07830	1017 aa		4.62	□□□□□ -1.67
SSF2	YDR312W	PRP5	P21372	849 aa	Predicted RBP	4.61	□□□□□ -1.67
SSF2	YDR312W	AKR1	P39010	764 aa		4.61	□□□□□ -1.67
SSF2	YDR312W	KIP3	P53086	805 aa	Known RBP	4.61	□□□□□ -1.67
SSF2	YDR312W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	RIP-Chip
SSF2	YDR312W	CHS2	P14180	963 aa		4.6	□□□□□ -1.67
SSF2	YDR312W	MAC1	P35192	417 aa		4.6	□□□□□ -1.67
SSF2	YDR312W	SAP155	P43612	1002 aa		4.6	□□□□□ -1.67
SSF2	YDR312W	TRP3	P00937	484 aa		4.59	□□□□□ -1.67
SSF2	YDR312W	HTS1	P07263	546 aa	Known RBP	4.59	□□□□□ -1.67
SSF2	YDR312W	OMA1	P36163	345 aa		4.59	□□□□□ -1.67
SSF2	YDR312W	INP52	P50942	1183 aa		4.59	□□□□□ -1.67
SSF2	YDR312W	NUT1	P53114	1132 aa		4.59	□□□□□ -1.67
SSF2	YDR312W	YMR074C	Q04773	145 aa		4.59	□□□□□ -1.67
SSF2	YDR312W	INP54	Q08227	384 aa	Known RBP	4.59	□□□□□ -1.67
SSF2	YDR312W	MED7	Q08278	222 aa		4.59	□□□□□ -1.67
SSF2	YDR312W	NOP8	Q08287	484 aa	Predicted RBP	4.59	□□□□□ -1.67
SSF2	YDR312W	YIG1	Q08956	461 aa		4.59	□□□□□ -1.67
SSF2	YDR312W	YHL050C	P38721	697 aa		4.58	□□□□□ -1.68
SSF2	YDR312W	YHR219W	P38900	624 aa		4.58	□□□□□ -1.68
SSF2	YDR312W	GCV1	P48015	400 aa		4.58	□□□□□ -1.68
SSF2	YDR312W	SAM37	P50110	327 aa		4.58	□□□□□ -1.68
SSF2	YDR312W	SEN54	Q02825	467 aa	Predicted RBP	4.58	□□□□□ -1.68
SSF2	YDR312W	PMT7	Q06644	662 aa		4.58	□□□□□ -1.68
SSF2	YDR312W	NOC3	Q07896	663 aa	Predicted RBP	4.58	□□□□□ -1.68
SSF2	YDR312W	GLT1	Q12680	2145 aa	Known RBP	4.57	□□□□□ -1.68
SSF2	YDR312W	YKR073C	P36153	106 aa		4.57	□□□□□ -1.68
SSF2	YDR312W	STM1	P39015	273 aa	Known RBP	4.57	□□□□□ -1.68
SSF2	YDR312W	YGR130C	P53278	816 aa		4.57	□□□□□ -1.68
SSF2	YDR312W	YOR223W	Q12015	292 aa		4.57	□□□□□ -1.68
SSF2	YDR312W	YLL054C	Q12244	843 aa		4.57	□□□□□ -1.68
SSF2	YDR312W	MON2	P48563	1636 aa	Predicted RBP	4.57	□□□□□ -1.68
SSF2	YDR312W	UTP22	P53254	1237 aa	Predicted RBP	4.56	□□□□□ -1.68
SSF2	YDR312W	YAF9	P53930	226 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 133.8 ms