RNA–Protein interactions for RNA: ENST00000637223.1

CLN6-218, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 652 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-218ENST00000637223 CDCA8Q53HL2 280 aa23.99■■□□□ 1.43
CLN6-218ENST00000637223 POLR3GLQ9BT43 218 aa23.98■■□□□ 1.43
CLN6-218ENST00000637223 SLC12A5Q9H2X9 1139 aa23.97■■□□□ 1.43
CLN6-218ENST00000637223 C11orf95C9JLR9 678 aaPredicted RBP23.94■■□□□ 1.42
CLN6-218ENST00000637223 NGLY1Q96IV0 654 aa23.94■■□□□ 1.42
CLN6-218ENST00000637223 SBNO1A3KN83 1393 aa23.93■■□□□ 1.42
CLN6-218ENST00000637223 SPATA31A3Q5VYP0 1347 aa23.93■■□□□ 1.42
CLN6-218ENST00000637223 PAK3O75914 559 aaPredicted RBP23.93■■□□□ 1.42
CLN6-218ENST00000637223 LMOD2Q6P5Q4 547 aa23.93■■□□□ 1.42
CLN6-218ENST00000637223 SRCAPQ6ZRS2 3230 aa23.93■■□□□ 1.42
CLN6-218ENST00000637223 PNPLA6Q8IY17 1366 aa23.92■■□□□ 1.42
CLN6-218ENST00000637223 ADAMTS2O95450 1211 aa23.92■■□□□ 1.42
CLN6-218ENST00000637223 ZRANB1Q9UGI0 708 aa23.92■■□□□ 1.42
CLN6-218ENST00000637223 TNS3Q68CZ2 1445 aa23.92■■□□□ 1.42
CLN6-218ENST00000637223 USP6P35125 1406 aa23.91■■□□□ 1.42
CLN6-218ENST00000637223 NINLQ9Y2I6 1382 aa23.91■■□□□ 1.42
CLN6-218ENST00000637223 CD163L1Q9NR16 1453 aa23.9■■□□□ 1.42
CLN6-218ENST00000637223 HDGFL2Q7Z4V5 671 aaPredicted RBP23.9■■□□□ 1.42
CLN6-218ENST00000637223 CPSF1Q10570 1443 aaKnown RBP23.9■■□□□ 1.42
CLN6-218ENST00000637223 ZNF692Q9BU19 519 aaPredicted RBP23.89■■□□□ 1.41
CLN6-218ENST00000637223 TERF2IPQ9NYB0 399 aa23.89■■□□□ 1.41
CLN6-218ENST00000637223 KTN1Q86UP2 1357 aaKnown RBP23.89■■□□□ 1.41
CLN6-218ENST00000637223 TRPM3Q9HCF6 1732 aaPredicted RBP23.88■■□□□ 1.41
CLN6-218ENST00000637223 PLEKHG5O94827 1062 aa23.88■■□□□ 1.41
CLN6-218ENST00000637223 A0A1W2PP64 1363 aa23.88■■□□□ 1.41
CLN6-218ENST00000637223 KIF7Q2M1P5 1343 aa23.86■■□□□ 1.41
CLN6-218ENST00000637223 ARHGEF10O15013 1369 aa23.86■■□□□ 1.41
CLN6-218ENST00000637223 USP21Q9UK80 565 aa23.85■■□□□ 1.41
CLN6-218ENST00000637223 SSH2Q76I76 1423 aa23.84■■□□□ 1.41
CLN6-218ENST00000637223 ANKRD36BQ8N2N9 1353 aa23.84■■□□□ 1.41
CLN6-218ENST00000637223 NUTM2GQ5VZR2 741 aa23.84■■□□□ 1.41
CLN6-218ENST00000637223 TTC21BQ7Z4L5 1316 aa23.84■■□□□ 1.41
CLN6-218ENST00000637223 BRD4O60885 1362 aaPredicted RBP23.83■■□□□ 1.41
CLN6-218ENST00000637223 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.82■■□□□ 1.4
CLN6-218ENST00000637223 ABTB2Q8N961 1025 aa23.82■■□□□ 1.4
CLN6-218ENST00000637223 TRPC5Q9UL62 973 aaPredicted RBP23.82■■□□□ 1.4
CLN6-218ENST00000637223 AKAP12Q02952 1782 aa23.82■■□□□ 1.4
CLN6-218ENST00000637223 MYOM1P52179 1685 aa23.82■■□□□ 1.4
CLN6-218ENST00000637223 ALS2Q96Q42 1657 aa23.81■■□□□ 1.4
CLN6-218ENST00000637223 CABLES1Q8TDN4 633 aa23.81■■□□□ 1.4
CLN6-218ENST00000637223 WASHC2AQ641Q2 1341 aa23.81■■□□□ 1.4
CLN6-218ENST00000637223 CCDC7Q96M83 1385 aa23.8■■□□□ 1.4
CLN6-218ENST00000637223 COL22A1Q8NFW1 1626 aaPredicted RBP23.8■■□□□ 1.4
CLN6-218ENST00000637223 EDC4Q6P2E9 1401 aaKnown RBP23.79■■□□□ 1.4
CLN6-218ENST00000637223 MON2Q7Z3U7 1717 aa23.79■■□□□ 1.4
CLN6-218ENST00000637223 NRKQ7Z2Y5 1582 aa23.78■■□□□ 1.4
CLN6-218ENST00000637223 TTC21AQ8NDW8 1320 aa23.78■■□□□ 1.4
CLN6-218ENST00000637223 HAP1P54257 671 aaPredicted RBP23.77■■□□□ 1.4
CLN6-218ENST00000637223 NLRP6P59044 892 aa23.76■■□□□ 1.39
CLN6-218ENST00000637223 NME9Q86XW9 330 aa23.76■■□□□ 1.39
CLN6-218ENST00000637223 FNBP4Q8N3X1 1017 aaPredicted RBP23.76■■□□□ 1.39
CLN6-218ENST00000637223 CARD14Q9BXL6 1004 aa23.76■■□□□ 1.39
CLN6-218ENST00000637223 CCDC125Q86Z20 511 aa23.75■■□□□ 1.39
CLN6-218ENST00000637223 PANK3Q9H999 370 aa23.75■■□□□ 1.39
CLN6-218ENST00000637223 NLRP13Q86W25 1043 aa23.74■■□□□ 1.39
CLN6-218ENST00000637223 NSD3Q9BZ95 1437 aa23.74■■□□□ 1.39
CLN6-218ENST00000637223 PIK3C2AO00443 1686 aa23.73■■□□□ 1.39
CLN6-218ENST00000637223 ATRNO75882 1429 aa23.71■■□□□ 1.39
CLN6-218ENST00000637223 USP19O94966 1318 aa23.71■■□□□ 1.39
CLN6-218ENST00000637223 ABCA3Q99758 1704 aa23.67■■□□□ 1.38
CLN6-218ENST00000637223 USP31Q70CQ4 1352 aa23.67■■□□□ 1.38
CLN6-218ENST00000637223 SOX12O15370 315 aa23.67■■□□□ 1.38
CLN6-218ENST00000637223 FYB1O15117 783 aa23.66■■□□□ 1.38
CLN6-218ENST00000637223 GCP02774 474 aa23.66■■□□□ 1.38
CLN6-218ENST00000637223 GGNBP2Q9H3C7 697 aa23.66■■□□□ 1.38
CLN6-218ENST00000637223 CRYBG1Q9Y4K1 1723 aa23.66■■□□□ 1.38
CLN6-218ENST00000637223 PHRF1Q9P1Y6 1649 aaKnown RBP23.66■■□□□ 1.38
CLN6-218ENST00000637223 ZC3H6P61129 1189 aaKnown RBP23.65■■□□□ 1.38
CLN6-218ENST00000637223 SLIT3O75094 1523 aa23.64■■□□□ 1.38
CLN6-218ENST00000637223 OVOS2A0A0J9YW53 1432 aa23.64■■□□□ 1.37
CLN6-218ENST00000637223 OVOS2Q6IE36 1432 aa23.64■■□□□ 1.37
CLN6-218ENST00000637223 CGNL1Q0VF96 1302 aa23.63■■□□□ 1.37
CLN6-218ENST00000637223 COG3Q96JB2 828 aa23.63■■□□□ 1.37
CLN6-218ENST00000637223 GJD4Q96KN9 370 aaPredicted RBP23.63■■□□□ 1.37
CLN6-218ENST00000637223 KIAA0232Q92628 1395 aa23.63■■□□□ 1.37
CLN6-218ENST00000637223 BCL9LQ86UU0 1499 aa23.62■■□□□ 1.37
CLN6-218ENST00000637223 ZBTB7CA1YPR0 619 aa23.61■■□□□ 1.37
CLN6-218ENST00000637223 KCNH5Q8NCM2 988 aa23.61■■□□□ 1.37
CLN6-218ENST00000637223 PRDM11Q9NQV5 511 aa23.61■■□□□ 1.37
CLN6-218ENST00000637223 KNSTRNQ9Y448 316 aa23.61■■□□□ 1.37
CLN6-218ENST00000637223 MARF1Q9Y4F3 1742 aaKnown RBP23.61■■□□□ 1.37
CLN6-218ENST00000637223 FAM83GA6ND36 823 aa23.6■■□□□ 1.37
CLN6-218ENST00000637223 EP400Q96L91 3159 aa23.59■■□□□ 1.37
CLN6-218ENST00000637223 CHRNA2Q15822 529 aa23.59■■□□□ 1.37
CLN6-218ENST00000637223 USP54Q70EL1 1684 aa23.58■■□□□ 1.37
CLN6-218ENST00000637223 DEFB132Q7Z7B7 95 aa23.58■■□□□ 1.37
CLN6-218ENST00000637223 CPDO75976 1380 aa23.57■■□□□ 1.36
CLN6-218ENST00000637223 NFAT5O94916 1531 aa23.57■■□□□ 1.36
CLN6-218ENST00000637223 BLMP54132 1417 aaPredicted RBP23.57■■□□□ 1.36
CLN6-218ENST00000637223 PER1O15534 1290 aaPredicted RBP23.56■■□□□ 1.36
CLN6-218ENST00000637223 KIF20BQ96Q89 1820 aa23.56■■□□□ 1.36
CLN6-218ENST00000637223 ZNF316A6NFI3 1004 aaPredicted RBP23.55■■□□□ 1.36
CLN6-218ENST00000637223 FBLN1P23142 703 aa23.55■■□□□ 1.36
CLN6-218ENST00000637223 ARHGEF25Q86VW2 580 aa23.54■■□□□ 1.36
CLN6-218ENST00000637223 SLIT2O94813 1529 aa23.54■■□□□ 1.36
CLN6-218ENST00000637223 SF3B2Q13435 895 aaKnown RBP23.53■■□□□ 1.36
CLN6-218ENST00000637223 AMER1Q5JTC6 1135 aaPredicted RBP23.53■■□□□ 1.36
CLN6-218ENST00000637223 BTG4Q9NY30 223 aa23.53■■□□□ 1.36
CLN6-218ENST00000637223 DDX10Q13206 875 aaKnown RBP23.52■■□□□ 1.36
CLN6-218ENST00000637223 CNGB1Q14028 1251 aaPredicted RBP23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms