RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 FYB1O15117 783 aa19.18■□□□□ 0.66
CLN3-242ENST00000635958 ESCO1Q5FWF5 840 aa19.18■□□□□ 0.66
CLN3-242ENST00000635958 ORAI2Q96SN7 254 aa19.17■□□□□ 0.66
CLN3-242ENST00000635958 BRD4O60885 1362 aaPredicted RBP19.17■□□□□ 0.66
CLN3-242ENST00000635958 MYBBP1AQ9BQG0 1328 aaKnown RBP19.17■□□□□ 0.66
CLN3-242ENST00000635958 CNGB1Q14028 1251 aaPredicted RBP19.16■□□□□ 0.66
CLN3-242ENST00000635958 TTC21BQ7Z4L5 1316 aa19.15■□□□□ 0.66
CLN3-242ENST00000635958 NRKQ7Z2Y5 1582 aa19.14■□□□□ 0.66
CLN3-242ENST00000635958 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.14■□□□□ 0.65
CLN3-242ENST00000635958 TTC21AQ8NDW8 1320 aa19.13■□□□□ 0.65
CLN3-242ENST00000635958 KIF1AQ12756 1690 aa19.13■□□□□ 0.65
CLN3-242ENST00000635958 MORC1Q86VD1 984 aa19.13■□□□□ 0.65
CLN3-242ENST00000635958 SLAIN2Q9P270 581 aa19.13■□□□□ 0.65
CLN3-242ENST00000635958 NLRP13Q86W25 1043 aa19.12■□□□□ 0.65
CLN3-242ENST00000635958 GGNBP2Q9H3C7 697 aa19.12■□□□□ 0.65
CLN3-242ENST00000635958 KIF20BQ96Q89 1820 aa19.11■□□□□ 0.65
CLN3-242ENST00000635958 PPP2R1AP30153 589 aa19.11■□□□□ 0.65
CLN3-242ENST00000635958 ANKRD26Q9UPS8 1709 aa19.1■□□□□ 0.65
CLN3-242ENST00000635958 CCDC184Q52MB2 194 aa19.1■□□□□ 0.65
CLN3-242ENST00000635958 NME9Q86XW9 330 aa19.1■□□□□ 0.65
CLN3-242ENST00000635958 FOXO3O43524 673 aa19.09■□□□□ 0.65
CLN3-242ENST00000635958 PSME1Q06323 249 aa19.09■□□□□ 0.65
CLN3-242ENST00000635958 USP31Q70CQ4 1352 aa19.08■□□□□ 0.64
CLN3-242ENST00000635958 UBAP1LF5GYI3 381 aa19.07■□□□□ 0.64
CLN3-242ENST00000635958 BRINP3Q76B58 766 aa19.07■□□□□ 0.64
CLN3-242ENST00000635958 MRS2Q9HD23 443 aa19.07■□□□□ 0.64
CLN3-242ENST00000635958 COG3Q96JB2 828 aa19.06■□□□□ 0.64
CLN3-242ENST00000635958 OVOS2A0A0J9YW53 1432 aa19.05■□□□□ 0.64
CLN3-242ENST00000635958 OVOS2Q6IE36 1432 aa19.05■□□□□ 0.64
CLN3-242ENST00000635958 NPHP3Q7Z494 1330 aa19.05■□□□□ 0.64
CLN3-242ENST00000635958 KRT28Q7Z3Y7 464 aa19.05■□□□□ 0.64
CLN3-242ENST00000635958 ZRANB1Q9UGI0 708 aa19.05■□□□□ 0.64
CLN3-242ENST00000635958 AATKQ6ZMQ8 1374 aa19.03■□□□□ 0.64
CLN3-242ENST00000635958 PIK3C2AO00443 1686 aa19.02■□□□□ 0.64
CLN3-242ENST00000635958 TRPM3Q9HCF6 1732 aaPredicted RBP19.02■□□□□ 0.64
CLN3-242ENST00000635958 USP54Q70EL1 1684 aa19.02■□□□□ 0.63
CLN3-242ENST00000635958 TNNT2P45379 298 aaPredicted RBP19.02■□□□□ 0.63
CLN3-242ENST00000635958 ABTB2Q8N961 1025 aa19.02■□□□□ 0.63
CLN3-242ENST00000635958 SBNO1A3KN83 1393 aa19.01■□□□□ 0.63
CLN3-242ENST00000635958 PAK3O75914 559 aaPredicted RBP19.01■□□□□ 0.63
CLN3-242ENST00000635958 PNISRQ8TF01 805 aaKnown RBP19.01■□□□□ 0.63
CLN3-242ENST00000635958 PXDNQ92626 1479 aa19■□□□□ 0.63
CLN3-242ENST00000635958 MTHFSP49914 203 aa19■□□□□ 0.63
CLN3-242ENST00000635958 NLRP6P59044 892 aa19■□□□□ 0.63
CLN3-242ENST00000635958 XPCQ01831 940 aaPredicted RBP19■□□□□ 0.63
CLN3-242ENST00000635958 SOS2Q07890 1332 aaPredicted RBP18.98■□□□□ 0.63
CLN3-242ENST00000635958 TOM1O60784 492 aa18.98■□□□□ 0.63
CLN3-242ENST00000635958 DDX17Q92841 729 aaKnown RBP18.98■□□□□ 0.63
CLN3-242ENST00000635958 POLKQ9UBT6 870 aa18.97■□□□□ 0.63
CLN3-242ENST00000635958 INSRP06213 1382 aa18.96■□□□□ 0.63
CLN3-242ENST00000635958 MARF1Q9Y4F3 1742 aaKnown RBP18.96■□□□□ 0.63
CLN3-242ENST00000635958 ALS2Q96Q42 1657 aa18.96■□□□□ 0.63
CLN3-242ENST00000635958 PNPLA6Q8IY17 1366 aa18.96■□□□□ 0.62
CLN3-242ENST00000635958 SMG6Q86US8 1419 aaKnown RBP18.95■□□□□ 0.62
CLN3-242ENST00000635958 SPATA31A3Q5VYP0 1347 aa18.95■□□□□ 0.62
CLN3-242ENST00000635958 NHSL1Q5SYE7 1610 aa18.95■□□□□ 0.62
CLN3-242ENST00000635958 MAP2P11137 1827 aaKnown RBP18.95■□□□□ 0.62
CLN3-242ENST00000635958 SUPT16HQ9Y5B9 1047 aaKnown RBP18.95■□□□□ 0.62
CLN3-242ENST00000635958 FBLN1P23142 703 aa18.94■□□□□ 0.62
CLN3-242ENST00000635958 TNS3Q68CZ2 1445 aa18.93■□□□□ 0.62
CLN3-242ENST00000635958 PIP4K2BP78356 416 aa18.93■□□□□ 0.62
CLN3-242ENST00000635958 NUTM2GQ5VZR2 741 aa18.93■□□□□ 0.62
CLN3-242ENST00000635958 CFAP53Q96M91 514 aa18.93■□□□□ 0.62
CLN3-242ENST00000635958 USP19O94966 1318 aa18.93■□□□□ 0.62
CLN3-242ENST00000635958 FAM9BQ8IZU0 186 aa18.92■□□□□ 0.62
CLN3-242ENST00000635958 KCNH5Q8NCM2 988 aa18.92■□□□□ 0.62
CLN3-242ENST00000635958 ROBO1Q9Y6N7 1651 aa18.92■□□□□ 0.62
CLN3-242ENST00000635958 ARHGEF10O15013 1369 aa18.91■□□□□ 0.62
CLN3-242ENST00000635958 EMILIN1Q9Y6C2 1016 aa18.9■□□□□ 0.62
CLN3-242ENST00000635958 SLIT3O75094 1523 aa18.9■□□□□ 0.62
CLN3-242ENST00000635958 AHDC1Q5TGY3 1603 aaPredicted RBP18.9■□□□□ 0.62
CLN3-242ENST00000635958 RRS1Q15050 365 aaKnown RBP18.9■□□□□ 0.62
CLN3-242ENST00000635958 COL3A1P02461 1466 aaPredicted RBP18.9■□□□□ 0.62
CLN3-242ENST00000635958 LMOD2Q6P5Q4 547 aa18.89■□□□□ 0.61
CLN3-242ENST00000635958 KIF24Q5T7B8 1368 aa18.89■□□□□ 0.61
CLN3-242ENST00000635958 CDK12Q9NYV4 1490 aaPredicted RBP18.89■□□□□ 0.61
CLN3-242ENST00000635958 GCP02774 474 aa18.88■□□□□ 0.61
CLN3-242ENST00000635958 NFAT5O94916 1531 aa18.88■□□□□ 0.61
CLN3-242ENST00000635958 MAP3K19Q56UN5 1328 aa18.88■□□□□ 0.61
CLN3-242ENST00000635958 HSPA1LP34931 641 aa18.86■□□□□ 0.61
CLN3-242ENST00000635958 MED1Q15648 1581 aaPredicted RBP18.86■□□□□ 0.61
CLN3-242ENST00000635958 PPM1GO15355 546 aaPredicted RBP18.86■□□□□ 0.61
CLN3-242ENST00000635958 WDR43Q15061 677 aaKnown RBP eCLIP18.86■□□□□ 0.61
CLN3-242ENST00000635958 ADAMTS8Q9UP79 889 aa18.86■□□□□ 0.61
CLN3-242ENST00000635958 SOX12O15370 315 aa18.85■□□□□ 0.61
CLN3-242ENST00000635958 DIAPH1O60610 1272 aaKnown RBP18.85■□□□□ 0.61
CLN3-242ENST00000635958 LRRC59Q96AG4 307 aaKnown RBP18.85■□□□□ 0.61
CLN3-242ENST00000635958 SHPRHQ149N8 1683 aa18.85■□□□□ 0.61
CLN3-242ENST00000635958 ARHGEF25Q86VW2 580 aa18.84■□□□□ 0.61
CLN3-242ENST00000635958 FLT4P35916 1363 aa18.84■□□□□ 0.61
CLN3-242ENST00000635958 PEAK1Q9H792 1746 aa18.84■□□□□ 0.61
CLN3-242ENST00000635958 NUDCQ9Y266 331 aa18.84■□□□□ 0.61
CLN3-242ENST00000635958 IL13P35225 146 aa18.83■□□□□ 0.6
CLN3-242ENST00000635958 RTL1A6NKG5 1358 aa18.83■□□□□ 0.6
CLN3-242ENST00000635958 PHRF1Q9P1Y6 1649 aaKnown RBP18.82■□□□□ 0.6
CLN3-242ENST00000635958 CRYBG1Q9Y4K1 1723 aa18.82■□□□□ 0.6
CLN3-242ENST00000635958 AMPHP49418 695 aa18.81■□□□□ 0.6
CLN3-242ENST00000635958 IP6K1Q92551 441 aa18.81■□□□□ 0.6
CLN3-242ENST00000635958 HOXC9P31274 260 aa18.81■□□□□ 0.6
CLN3-242ENST00000635958 HSP90AB2PQ58FF8 381 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms