RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 NINLQ9Y2I6 1382 aa20.22■□□□□ 0.83
CPSF1-213ENST00000620219 C20orf194Q5TEA3 1177 aa20.21■□□□□ 0.83
CPSF1-213ENST00000620219 POLKQ9UBT6 870 aa20.21■□□□□ 0.83
CPSF1-213ENST00000620219 PIK3C2BO00750 1634 aa20.21■□□□□ 0.83
CPSF1-213ENST00000620219 NEXMIFQ5QGS0 1516 aa20.2■□□□□ 0.83
CPSF1-213ENST00000620219 ZC3H6P61129 1189 aaKnown RBP20.2■□□□□ 0.82
CPSF1-213ENST00000620219 SPINK5Q9NQ38 1064 aaPredicted RBP20.2■□□□□ 0.82
CPSF1-213ENST00000620219 ZFYVE9O95405 1425 aa20.2■□□□□ 0.82
CPSF1-213ENST00000620219 COG6Q9Y2V7 657 aa20.2■□□□□ 0.82
CPSF1-213ENST00000620219 HSP90AB2PQ58FF8 381 aa20.19■□□□□ 0.82
CPSF1-213ENST00000620219 DAXXQ9UER7 740 aaPredicted RBP20.19■□□□□ 0.82
CPSF1-213ENST00000620219 PREX1Q8TCU6 1659 aa20.19■□□□□ 0.82
CPSF1-213ENST00000620219 TMPOP42166 694 aaKnown RBP20.19■□□□□ 0.82
CPSF1-213ENST00000620219 DMRT2Q9Y5R5 561 aa20.19■□□□□ 0.82
CPSF1-213ENST00000620219 ALKQ9UM73 1620 aa20.18■□□□□ 0.82
CPSF1-213ENST00000620219 CALD1Q05682 793 aaKnown RBP20.18■□□□□ 0.82
CPSF1-213ENST00000620219 PLEKHG1Q9ULL1 1385 aa20.18■□□□□ 0.82
CPSF1-213ENST00000620219 IQGAP1P46940 1657 aa20.18■□□□□ 0.82
CPSF1-213ENST00000620219 DCTN1Q14203 1278 aa20.17■□□□□ 0.82
CPSF1-213ENST00000620219 NSD2O96028 1365 aa20.17■□□□□ 0.82
CPSF1-213ENST00000620219 ITPRIPQ8IWB1 547 aa20.17■□□□□ 0.82
CPSF1-213ENST00000620219 SIGLEC1Q9BZZ2 1709 aa20.17■□□□□ 0.82
CPSF1-213ENST00000620219 LAMC1P11047 1609 aa20.17■□□□□ 0.82
CPSF1-213ENST00000620219 EXOSC9Q06265 439 aaKnown RBP20.17■□□□□ 0.82
CPSF1-213ENST00000620219 NLRP1Q9C000 1473 aa20.17■□□□□ 0.82
CPSF1-213ENST00000620219 DUSP27Q5VZP5 1158 aa20.16■□□□□ 0.82
CPSF1-213ENST00000620219 SKAP1Q86WV1 359 aa20.16■□□□□ 0.82
CPSF1-213ENST00000620219 SLFN5Q08AF3 891 aa20.16■□□□□ 0.82
CPSF1-213ENST00000620219 LMOD3Q0VAK6 560 aa20.16■□□□□ 0.82
CPSF1-213ENST00000620219 ORAI2Q96SN7 254 aa20.16■□□□□ 0.82
CPSF1-213ENST00000620219 PRR36Q9H6K5 1346 aa20.16■□□□□ 0.82
CPSF1-213ENST00000620219 USHBP1Q8N6Y0 703 aa20.16■□□□□ 0.82
CPSF1-213ENST00000620219 NECTIN2Q92692 538 aa20.15■□□□□ 0.82
CPSF1-213ENST00000620219 PANK1Q8TE04 598 aa20.15■□□□□ 0.82
CPSF1-213ENST00000620219 NGEFQ8N5V2 710 aa20.14■□□□□ 0.82
CPSF1-213ENST00000620219 FCHSD2O94868 740 aa20.14■□□□□ 0.81
CPSF1-213ENST00000620219 NLRP2Q9NX02 1062 aa20.13■□□□□ 0.81
CPSF1-213ENST00000620219 NPC1L1Q9UHC9 1359 aa20.13■□□□□ 0.81
CPSF1-213ENST00000620219 KIF13AQ9H1H9 1805 aa20.12■□□□□ 0.81
CPSF1-213ENST00000620219 ZC3H13Q5T200 1668 aaKnown RBP20.12■□□□□ 0.81
CPSF1-213ENST00000620219 POLR3AO14802 1390 aaPredicted RBP20.12■□□□□ 0.81
CPSF1-213ENST00000620219 AEBP1Q8IUX7 1158 aa20.12■□□□□ 0.81
CPSF1-213ENST00000620219 ARXQ96QS3 562 aa20.12■□□□□ 0.81
CPSF1-213ENST00000620219 DDX17Q92841 729 aaKnown RBP20.11■□□□□ 0.81
CPSF1-213ENST00000620219 NRXN1Q9ULB1 1477 aa20.1■□□□□ 0.81
CPSF1-213ENST00000620219 QRICH2Q9H0J4 1663 aa20.1■□□□□ 0.81
CPSF1-213ENST00000620219 ADGRB1O14514 1584 aa20.1■□□□□ 0.81
CPSF1-213ENST00000620219 KRT28Q7Z3Y7 464 aa20.1■□□□□ 0.81
CPSF1-213ENST00000620219 PPLO60437 1756 aa20.1■□□□□ 0.81
CPSF1-213ENST00000620219 MYO5BQ9ULV0 1848 aa20.09■□□□□ 0.81
CPSF1-213ENST00000620219 FAM83GA6ND36 823 aa20.09■□□□□ 0.81
CPSF1-213ENST00000620219 USP35Q9P2H5 1018 aa20.09■□□□□ 0.81
CPSF1-213ENST00000620219 IPO8O15397 1037 aaKnown RBP20.08■□□□□ 0.81
CPSF1-213ENST00000620219 MCM10Q7L590 875 aa20.08■□□□□ 0.81
CPSF1-213ENST00000620219 MIS18AQ9NYP9 233 aa20.08■□□□□ 0.8
CPSF1-213ENST00000620219 TMEM131LA2VDJ0 1609 aa20.07■□□□□ 0.8
CPSF1-213ENST00000620219 MYT1Q01538 1121 aa20.07■□□□□ 0.8
CPSF1-213ENST00000620219 SIRT1Q96EB6 747 aa20.07■□□□□ 0.8
CPSF1-213ENST00000620219 SLC4A10Q6U841 1118 aa20.07■□□□□ 0.8
CPSF1-213ENST00000620219 PHACTR3Q96KR7 559 aa20.07■□□□□ 0.8
CPSF1-213ENST00000620219 NFE2L2Q16236 605 aa20.06■□□□□ 0.8
CPSF1-213ENST00000620219 WDR63Q8IWG1 891 aa20.06■□□□□ 0.8
CPSF1-213ENST00000620219 GNAI1P63096 354 aa20.06■□□□□ 0.8
CPSF1-213ENST00000620219 C19orf44Q9H6X5 657 aa20.06■□□□□ 0.8
CPSF1-213ENST00000620219 ZKSCAN2Q63HK3 967 aa20.06■□□□□ 0.8
CPSF1-213ENST00000620219 CABLES1Q8TDN4 633 aa20.06■□□□□ 0.8
CPSF1-213ENST00000620219 TULP4Q9NRJ4 1543 aa20.05■□□□□ 0.8
CPSF1-213ENST00000620219 MS4A1P11836 297 aa20.05■□□□□ 0.8
CPSF1-213ENST00000620219 BLMP54132 1417 aaPredicted RBP20.05■□□□□ 0.8
CPSF1-213ENST00000620219 EIF4A2Q14240 407 aaKnown RBP20.05■□□□□ 0.8
CPSF1-213ENST00000620219 TSPYL4Q9UJ04 414 aa20.05■□□□□ 0.8
CPSF1-213ENST00000620219 SETBP1Q9Y6X0 1596 aa20.05■□□□□ 0.8
CPSF1-213ENST00000620219 ANP32AP39687 249 aaKnown RBP20.05■□□□□ 0.8
CPSF1-213ENST00000620219 SPATA31D1Q6ZQQ2 1576 aa20.05■□□□□ 0.8
CPSF1-213ENST00000620219 TEFQ10587 303 aa20.04■□□□□ 0.8
CPSF1-213ENST00000620219 EVA1CP58658 441 aa20.04■□□□□ 0.8
CPSF1-213ENST00000620219 C1orf141Q5JVX7 400 aa20.04■□□□□ 0.8
CPSF1-213ENST00000620219 PTPRMP28827 1452 aa20.04■□□□□ 0.8
CPSF1-213ENST00000620219 EDC4Q6P2E9 1401 aaKnown RBP20.04■□□□□ 0.8
CPSF1-213ENST00000620219 MAP3K19Q56UN5 1328 aa20.04■□□□□ 0.8
CPSF1-213ENST00000620219 PLEKHG3A1L390 1219 aa20.04■□□□□ 0.8
CPSF1-213ENST00000620219 APBB1O00213 710 aa20.03■□□□□ 0.8
CPSF1-213ENST00000620219 EIF2S2P20042 333 aaKnown RBP20.03■□□□□ 0.8
CPSF1-213ENST00000620219 KIAA1210Q9ULL0 1709 aa20.03■□□□□ 0.8
CPSF1-213ENST00000620219 CCDC9Q9Y3X0 531 aaKnown RBP20.03■□□□□ 0.8
CPSF1-213ENST00000620219 STRN4Q9NRL3 753 aa20.02■□□□□ 0.8
CPSF1-213ENST00000620219 CADPS2Q86UW7 1296 aa20.02■□□□□ 0.79
CPSF1-213ENST00000620219 STK31Q9BXU1 1019 aa20.02■□□□□ 0.79
CPSF1-213ENST00000620219 CHRNA2Q15822 529 aa20.01■□□□□ 0.79
CPSF1-213ENST00000620219 RAPGEF4Q8WZA2 1011 aa20.01■□□□□ 0.79
CPSF1-213ENST00000620219 TTC21AQ8NDW8 1320 aa20.01■□□□□ 0.79
CPSF1-213ENST00000620219 ADAMTS13Q76LX8 1427 aa20■□□□□ 0.79
CPSF1-213ENST00000620219 NPHP4O75161 1426 aaPredicted RBP20■□□□□ 0.79
CPSF1-213ENST00000620219 DZIP1LQ8IYY4 767 aaKnown RBP20■□□□□ 0.79
CPSF1-213ENST00000620219 PIP4K2BP78356 416 aa19.99■□□□□ 0.79
CPSF1-213ENST00000620219 FANCIQ9NVI1 1328 aa19.99■□□□□ 0.79
CPSF1-213ENST00000620219 FAM135BQ49AJ0 1406 aa19.99■□□□□ 0.79
CPSF1-213ENST00000620219 TWISTNBQ3B726 338 aaPredicted RBP19.98■□□□□ 0.79
CPSF1-213ENST00000620219 KCNH5Q8NCM2 988 aa19.98■□□□□ 0.79
CPSF1-213ENST00000620219 PRDM11Q9NQV5 511 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms