RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 NINLQ9Y2I6 1382 aa7.33□□□□□ -1.24
SHMT1-211ENST00000618902 ITSN1Q15811 1721 aa7.33□□□□□ -1.24
SHMT1-211ENST00000618902 TRPM3Q9HCF6 1732 aaPredicted RBP7.33□□□□□ -1.24
SHMT1-211ENST00000618902 RXRBP28702 533 aa7.33□□□□□ -1.24
SHMT1-211ENST00000618902 RBM6P78332 1123 aaKnown RBP7.33□□□□□ -1.24
SHMT1-211ENST00000618902 NGDNQ8NEJ9 315 aaKnown RBP7.33□□□□□ -1.24
SHMT1-211ENST00000618902 RGS17Q9UGC6 210 aaPredicted RBP7.33□□□□□ -1.24
SHMT1-211ENST00000618902 TRPC5Q9UL62 973 aaPredicted RBP7.33□□□□□ -1.24
SHMT1-211ENST00000618902 CPSF1Q10570 1443 aaKnown RBP7.33□□□□□ -1.24
SHMT1-211ENST00000618902 SSH2Q76I76 1423 aa7.33□□□□□ -1.24
SHMT1-211ENST00000618902 CDCA8Q53HL2 280 aa7.32□□□□□ -1.24
SHMT1-211ENST00000618902 LRP6O75581 1613 aa7.31□□□□□ -1.24
SHMT1-211ENST00000618902 CENPBP07199 599 aaPredicted RBP7.31□□□□□ -1.24
SHMT1-211ENST00000618902 TMF1P82094 1093 aa7.31□□□□□ -1.24
SHMT1-211ENST00000618902 ILDR2Q71H61 639 aa7.31□□□□□ -1.24
SHMT1-211ENST00000618902 A0A1W2PP64 1363 aa7.31□□□□□ -1.24
SHMT1-211ENST00000618902 AFF2P51816 1311 aa7.3□□□□□ -1.24
SHMT1-211ENST00000618902 KIF7Q2M1P5 1343 aa7.3□□□□□ -1.24
SHMT1-211ENST00000618902 USP6P35125 1406 aa7.3□□□□□ -1.24
SHMT1-211ENST00000618902 NUTM2GQ5VZR2 741 aa7.3□□□□□ -1.24
SHMT1-211ENST00000618902 PPP4R3CPQ6ZMV5 832 aa7.3□□□□□ -1.24
SHMT1-211ENST00000618902 CCDC125Q86Z20 511 aa7.3□□□□□ -1.24
SHMT1-211ENST00000618902 TMC1Q8TDI8 760 aa7.3□□□□□ -1.24
SHMT1-211ENST00000618902 CABLES1Q8TDN4 633 aa7.3□□□□□ -1.24
SHMT1-211ENST00000618902 ZRANB1Q9UGI0 708 aa7.3□□□□□ -1.24
SHMT1-211ENST00000618902 MYOM1P52179 1685 aa7.3□□□□□ -1.24
SHMT1-211ENST00000618902 ALS2Q96Q42 1657 aa7.3□□□□□ -1.24
SHMT1-211ENST00000618902 AKAP12Q02952 1782 aa7.3□□□□□ -1.24
SHMT1-211ENST00000618902 WASHC2AQ641Q2 1341 aa7.29□□□□□ -1.24
SHMT1-211ENST00000618902 TTC21BQ7Z4L5 1316 aa7.29□□□□□ -1.24
SHMT1-211ENST00000618902 NUTM2BA6NNL0 878 aaPredicted RBP7.29□□□□□ -1.24
SHMT1-211ENST00000618902 NUTM2EB1AL46 878 aaPredicted RBP7.29□□□□□ -1.24
SHMT1-211ENST00000618902 HAP1P54257 671 aaPredicted RBP7.29□□□□□ -1.24
SHMT1-211ENST00000618902 POTEAQ6S8J7 498 aa7.29□□□□□ -1.24
SHMT1-211ENST00000618902 NLRP13Q86W25 1043 aa7.29□□□□□ -1.24
SHMT1-211ENST00000618902 UNC5CLQ8IV45 518 aa7.29□□□□□ -1.24
SHMT1-211ENST00000618902 NUTM2AQ8IVF1 878 aaPredicted RBP7.29□□□□□ -1.24
SHMT1-211ENST00000618902 C8orf37Q96NL8 207 aa7.29□□□□□ -1.24
SHMT1-211ENST00000618902 CARD14Q9BXL6 1004 aa7.29□□□□□ -1.24
SHMT1-211ENST00000618902 QTRT2Q9H974 415 aaKnown RBP7.29□□□□□ -1.24
SHMT1-211ENST00000618902 USP21Q9UK80 565 aa7.29□□□□□ -1.24
SHMT1-211ENST00000618902 TTC21AQ8NDW8 1320 aa7.28□□□□□ -1.24
SHMT1-211ENST00000618902 SLIT2O94813 1529 aa7.28□□□□□ -1.24
SHMT1-211ENST00000618902 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.28□□□□□ -1.24
SHMT1-211ENST00000618902 ONECUT3O60422 494 aaPredicted RBP7.28□□□□□ -1.24
SHMT1-211ENST00000618902 PLEKHG5O94827 1062 aa7.28□□□□□ -1.24
SHMT1-211ENST00000618902 NME9Q86XW9 330 aa7.28□□□□□ -1.24
SHMT1-211ENST00000618902 KCNH5Q8NCM2 988 aa7.28□□□□□ -1.24
SHMT1-211ENST00000618902 POLR3GLQ9BT43 218 aa7.28□□□□□ -1.24
SHMT1-211ENST00000618902 CPDO75976 1380 aa7.28□□□□□ -1.24
SHMT1-211ENST00000618902 KTN1Q86UP2 1357 aaKnown RBP7.28□□□□□ -1.24
SHMT1-211ENST00000618902 CCDC7Q96M83 1385 aa7.28□□□□□ -1.24
SHMT1-211ENST00000618902 NRKQ7Z2Y5 1582 aa7.28□□□□□ -1.24
SHMT1-211ENST00000618902 ATRNO75882 1429 aa7.27□□□□□ -1.24
SHMT1-211ENST00000618902 MON2Q7Z3U7 1717 aa7.27□□□□□ -1.25
SHMT1-211ENST00000618902 NWD2Q9ULI1 1742 aa7.27□□□□□ -1.25
SHMT1-211ENST00000618902 MARF1Q9Y4F3 1742 aaKnown RBP7.27□□□□□ -1.25
SHMT1-211ENST00000618902 ZNF316A6NFI3 1004 aaPredicted RBP7.27□□□□□ -1.25
SHMT1-211ENST00000618902 PAK3O75914 559 aaPredicted RBP7.27□□□□□ -1.25
SHMT1-211ENST00000618902 VPS72Q15906 364 aa7.27□□□□□ -1.25
SHMT1-211ENST00000618902 DIEXFQ68CQ4 756 aaKnown RBP7.27□□□□□ -1.25
SHMT1-211ENST00000618902 LMOD2Q6P5Q4 547 aa7.27□□□□□ -1.25
SHMT1-211ENST00000618902 GJD4Q96KN9 370 aaPredicted RBP7.27□□□□□ -1.25
SHMT1-211ENST00000618902 TERF2IPQ9NYB0 399 aa7.27□□□□□ -1.25
SHMT1-211ENST00000618902 ANKRD36BQ8N2N9 1353 aa7.27□□□□□ -1.25
SHMT1-211ENST00000618902 BCL9LQ86UU0 1499 aa7.27□□□□□ -1.25
SHMT1-211ENST00000618902 PIK3C2AO00443 1686 aa7.27□□□□□ -1.25
SHMT1-211ENST00000618902 CRYBG1Q9Y4K1 1723 aa7.27□□□□□ -1.25
SHMT1-211ENST00000618902 USP19O94966 1318 aa7.27□□□□□ -1.25
SHMT1-211ENST00000618902 ADAMTS2O95450 1211 aa7.26□□□□□ -1.25
SHMT1-211ENST00000618902 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.26□□□□□ -1.25
SHMT1-211ENST00000618902 ABTB2Q8N961 1025 aa7.26□□□□□ -1.25
SHMT1-211ENST00000618902 PANK3Q9H999 370 aa7.26□□□□□ -1.25
SHMT1-211ENST00000618902 ABCA3Q99758 1704 aa7.26□□□□□ -1.25
SHMT1-211ENST00000618902 EDC4Q6P2E9 1401 aaKnown RBP7.26□□□□□ -1.25
SHMT1-211ENST00000618902 USP31Q70CQ4 1352 aa7.25□□□□□ -1.25
SHMT1-211ENST00000618902 HDGFL2Q7Z4V5 671 aaPredicted RBP7.25□□□□□ -1.25
SHMT1-211ENST00000618902 THRAP3Q9Y2W1 955 aaKnown RBP7.25□□□□□ -1.25
SHMT1-211ENST00000618902 COL14A1Q05707 1796 aaKnown RBP7.24□□□□□ -1.25
SHMT1-211ENST00000618902 SLIT3O75094 1523 aa7.24□□□□□ -1.25
SHMT1-211ENST00000618902 ABCC6O95255 1503 aa7.24□□□□□ -1.25
SHMT1-211ENST00000618902 FYB1O15117 783 aa7.24□□□□□ -1.25
SHMT1-211ENST00000618902 PER1O15534 1290 aaPredicted RBP7.24□□□□□ -1.25
SHMT1-211ENST00000618902 GCP02774 474 aa7.24□□□□□ -1.25
SHMT1-211ENST00000618902 FBLN1P23142 703 aa7.24□□□□□ -1.25
SHMT1-211ENST00000618902 NLRP6P59044 892 aa7.24□□□□□ -1.25
SHMT1-211ENST00000618902 OVOS2A0A0J9YW53 1432 aa7.24□□□□□ -1.25
SHMT1-211ENST00000618902 OVOS2Q6IE36 1432 aa7.24□□□□□ -1.25
SHMT1-211ENST00000618902 NSD3Q9BZ95 1437 aa7.24□□□□□ -1.25
SHMT1-211ENST00000618902 NFAT5O94916 1531 aa7.23□□□□□ -1.25
SHMT1-211ENST00000618902 FAM83GA6ND36 823 aa7.23□□□□□ -1.25
SHMT1-211ENST00000618902 CDCA7Q9BWT1 371 aaPredicted RBP7.23□□□□□ -1.25
SHMT1-211ENST00000618902 GGNBP2Q9H3C7 697 aa7.23□□□□□ -1.25
SHMT1-211ENST00000618902 PRDM11Q9NQV5 511 aa7.23□□□□□ -1.25
SHMT1-211ENST00000618902 PHRF1Q9P1Y6 1649 aaKnown RBP7.23□□□□□ -1.25
SHMT1-211ENST00000618902 USP54Q70EL1 1684 aa7.22□□□□□ -1.25
SHMT1-211ENST00000618902 AATKQ6ZMQ8 1374 aa7.22□□□□□ -1.25
SHMT1-211ENST00000618902 KIAA0232Q92628 1395 aa7.22□□□□□ -1.25
SHMT1-211ENST00000618902 ZC3H6P61129 1189 aaKnown RBP7.22□□□□□ -1.25
SHMT1-211ENST00000618902 CHRNA2Q15822 529 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms