RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 ATP7BP35670 1465 aa11□□□□□ -0.65
CUX1-219ENST00000606749 ALS2Q96Q42 1657 aa11□□□□□ -0.65
CUX1-219ENST00000606749 KIAA1210Q9ULL0 1709 aa10.99□□□□□ -0.65
CUX1-219ENST00000606749 KRT27Q7Z3Y8 459 aa10.99□□□□□ -0.65
CUX1-219ENST00000606749 POLR3AO14802 1390 aaPredicted RBP10.99□□□□□ -0.65
CUX1-219ENST00000606749 ABCA3Q99758 1704 aa10.98□□□□□ -0.65
CUX1-219ENST00000606749 NWD2Q9ULI1 1742 aa10.98□□□□□ -0.65
CUX1-219ENST00000606749 SRPK2P78362 688 aaKnown RBP10.98□□□□□ -0.65
CUX1-219ENST00000606749 NEUROD1Q13562 356 aa10.98□□□□□ -0.65
CUX1-219ENST00000606749 FAM98CQ17RN3 349 aaKnown RBP10.98□□□□□ -0.65
CUX1-219ENST00000606749 NUTM2GQ5VZR2 741 aa10.98□□□□□ -0.65
CUX1-219ENST00000606749 PRDM11Q9NQV5 511 aa10.98□□□□□ -0.65
CUX1-219ENST00000606749 CENPJQ9HC77 1338 aaPredicted RBP10.98□□□□□ -0.65
CUX1-219ENST00000606749 PLCH1Q4KWH8 1693 aa10.98□□□□□ -0.65
CUX1-219ENST00000606749 ABTB2Q8N961 1025 aa10.97□□□□□ -0.65
CUX1-219ENST00000606749 CABP2Q9NPB3 220 aa10.97□□□□□ -0.65
CUX1-219ENST00000606749 ZRANB1Q9UGI0 708 aa10.97□□□□□ -0.65
CUX1-219ENST00000606749 BLMP54132 1417 aaPredicted RBP10.96□□□□□ -0.65
CUX1-219ENST00000606749 SPATA31A5Q5VU36 1347 aa10.96□□□□□ -0.65
CUX1-219ENST00000606749 SPATA31A7Q8IWB4 1347 aa10.96□□□□□ -0.65
CUX1-219ENST00000606749 A0A0G2JS52 829 aa10.96□□□□□ -0.65
CUX1-219ENST00000606749 ZC3H6P61129 1189 aaKnown RBP10.96□□□□□ -0.65
CUX1-219ENST00000606749 MYT1Q01538 1121 aa10.96□□□□□ -0.65
CUX1-219ENST00000606749 CHRNA2Q15822 529 aa10.96□□□□□ -0.65
CUX1-219ENST00000606749 BRWD3Q6RI45 1802 aa10.95□□□□□ -0.66
CUX1-219ENST00000606749 ITSN1Q15811 1721 aa10.95□□□□□ -0.66
CUX1-219ENST00000606749 KIAA0232Q92628 1395 aa10.95□□□□□ -0.66
CUX1-219ENST00000606749 SF3B2Q13435 895 aaKnown RBP10.95□□□□□ -0.66
CUX1-219ENST00000606749 DEFB132Q7Z7B7 95 aa10.95□□□□□ -0.66
CUX1-219ENST00000606749 CABP1Q9NZU7 370 aa10.95□□□□□ -0.66
CUX1-219ENST00000606749 COL14A1Q05707 1796 aaKnown RBP10.95□□□□□ -0.66
CUX1-219ENST00000606749 NLRP13Q86W25 1043 aa10.94□□□□□ -0.66
CUX1-219ENST00000606749 PPIP5K1Q6PFW1 1433 aa10.93□□□□□ -0.66
CUX1-219ENST00000606749 NRAPQ86VF7 1730 aa10.93□□□□□ -0.66
CUX1-219ENST00000606749 CRYBG1Q9Y4K1 1723 aa10.93□□□□□ -0.66
CUX1-219ENST00000606749 SPATA31A1Q5TZJ5 1347 aa10.93□□□□□ -0.66
CUX1-219ENST00000606749 EVA1CP58658 441 aa10.93□□□□□ -0.66
CUX1-219ENST00000606749 STRN4Q9NRL3 753 aa10.93□□□□□ -0.66
CUX1-219ENST00000606749 TOPAZ1Q8N9V7 1692 aa10.92□□□□□ -0.66
CUX1-219ENST00000606749 EVC2Q86UK5 1308 aa10.92□□□□□ -0.66
CUX1-219ENST00000606749 GCP02774 474 aa10.92□□□□□ -0.66
CUX1-219ENST00000606749 FAM182BQ5T319 152 aa10.92□□□□□ -0.66
CUX1-219ENST00000606749 ROCK2O75116 1388 aaKnown RBP10.91□□□□□ -0.66
CUX1-219ENST00000606749 USP19O94966 1318 aa10.91□□□□□ -0.66
CUX1-219ENST00000606749 SRCAPQ6ZRS2 3230 aa10.91□□□□□ -0.66
CUX1-219ENST00000606749 BRD4O60885 1362 aaPredicted RBP10.9□□□□□ -0.66
CUX1-219ENST00000606749 CPDO75976 1380 aa10.9□□□□□ -0.66
CUX1-219ENST00000606749 NLRP6P59044 892 aa10.9□□□□□ -0.66
CUX1-219ENST00000606749 BARGINQ6ZT62 677 aa10.9□□□□□ -0.66
CUX1-219ENST00000606749 USP35Q9P2H5 1018 aa10.9□□□□□ -0.66
CUX1-219ENST00000606749 BAG6P46379 1132 aa10.89□□□□□ -0.67
CUX1-219ENST00000606749 LARP1Q6PKG0 1096 aaKnown RBP10.89□□□□□ -0.67
CUX1-219ENST00000606749 ZNF692Q9BU19 519 aaPredicted RBP10.89□□□□□ -0.67
CUX1-219ENST00000606749 QRICH2Q9H0J4 1663 aa10.89□□□□□ -0.67
CUX1-219ENST00000606749 CAMTA1Q9Y6Y1 1673 aa10.89□□□□□ -0.67
CUX1-219ENST00000606749 TRPM1Q7Z4N2 1603 aa10.88□□□□□ -0.67
CUX1-219ENST00000606749 PHRF1Q9P1Y6 1649 aaKnown RBP10.88□□□□□ -0.67
CUX1-219ENST00000606749 USP6P35125 1406 aa10.88□□□□□ -0.67
CUX1-219ENST00000606749 SSH2Q76I76 1423 aa10.87□□□□□ -0.67
CUX1-219ENST00000606749 EN1Q05925 392 aaPredicted RBP10.87□□□□□ -0.67
CUX1-219ENST00000606749 FAM196AQ6ZSG2 479 aa10.87□□□□□ -0.67
CUX1-219ENST00000606749 TCP11L2Q8N4U5 519 aa10.87□□□□□ -0.67
CUX1-219ENST00000606749 THSD7AQ9UPZ6 1657 aa10.86□□□□□ -0.67
CUX1-219ENST00000606749 TRIM37O94972 964 aa10.86□□□□□ -0.67
CUX1-219ENST00000606749 THRAP3Q9Y2W1 955 aaKnown RBP10.86□□□□□ -0.67
CUX1-219ENST00000606749 NRKQ7Z2Y5 1582 aa10.86□□□□□ -0.67
CUX1-219ENST00000606749 TTC21BQ7Z4L5 1316 aa10.85□□□□□ -0.67
CUX1-219ENST00000606749 ZBTB7CA1YPR0 619 aa10.85□□□□□ -0.67
CUX1-219ENST00000606749 PDE3BQ13370 1112 aa10.85□□□□□ -0.67
CUX1-219ENST00000606749 CARD11Q9BXL7 1154 aa10.85□□□□□ -0.67
CUX1-219ENST00000606749 AATKQ6ZMQ8 1374 aa10.85□□□□□ -0.67
CUX1-219ENST00000606749 ARHGEF25Q86VW2 580 aa10.84□□□□□ -0.67
CUX1-219ENST00000606749 AXIN2Q9Y2T1 843 aa10.84□□□□□ -0.67
CUX1-219ENST00000606749 LMO7Q8WWI1 1683 aa10.84□□□□□ -0.67
CUX1-219ENST00000606749 CPSF1Q10570 1443 aaKnown RBP10.84□□□□□ -0.67
CUX1-219ENST00000606749 TTC21AQ8NDW8 1320 aa10.84□□□□□ -0.67
CUX1-219ENST00000606749 COL5A2P05997 1499 aaPredicted RBP10.83□□□□□ -0.68
CUX1-219ENST00000606749 EZH2Q15910 746 aaKnown RBP10.83□□□□□ -0.68
CUX1-219ENST00000606749 KCNH5Q8NCM2 988 aa10.83□□□□□ -0.68
CUX1-219ENST00000606749 CAMKK2Q96RR4 588 aa10.83□□□□□ -0.68
CUX1-219ENST00000606749 TONSLQ96HA7 1378 aa10.82□□□□□ -0.68
CUX1-219ENST00000606749 SBNO2Q9Y2G9 1366 aa10.82□□□□□ -0.68
CUX1-219ENST00000606749 PSDA5PKW4 1024 aaPredicted RBP10.82□□□□□ -0.68
CUX1-219ENST00000606749 APBA3O96018 575 aa10.82□□□□□ -0.68
CUX1-219ENST00000606749 TRIM26Q12899 539 aaPredicted RBP10.82□□□□□ -0.68
CUX1-219ENST00000606749 SLIT3O75094 1523 aa10.82□□□□□ -0.68
CUX1-219ENST00000606749 DISP2A7MBM2 1401 aa10.82□□□□□ -0.68
CUX1-219ENST00000606749 CRB1P82279 1406 aa10.82□□□□□ -0.68
CUX1-219ENST00000606749 KTN1Q86UP2 1357 aaKnown RBP10.81□□□□□ -0.68
CUX1-219ENST00000606749 SOX12O15370 315 aa10.81□□□□□ -0.68
CUX1-219ENST00000606749 TOM1L2Q6ZVM7 507 aa10.81□□□□□ -0.68
CUX1-219ENST00000606749 SLC12A5Q9H2X9 1139 aa10.81□□□□□ -0.68
CUX1-219ENST00000606749 PIK3C2AO00443 1686 aa10.8□□□□□ -0.68
CUX1-219ENST00000606749 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.8□□□□□ -0.68
CUX1-219ENST00000606749 TMC1Q8TDI8 760 aa10.8□□□□□ -0.68
CUX1-219ENST00000606749 PUS7Q96PZ0 661 aaKnown RBP10.8□□□□□ -0.68
CUX1-219ENST00000606749 RGPD1P0DJD0 1748 aa10.8□□□□□ -0.68
CUX1-219ENST00000606749 WDR17Q8IZU2 1322 aa10.8□□□□□ -0.68
CUX1-219ENST00000606749 C11orf95C9JLR9 678 aaPredicted RBP10.79□□□□□ -0.68
CUX1-219ENST00000606749 R3HDM1Q15032 1099 aaKnown RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms