RNA–Protein interactions for RNA: ENST00000600910.5

PNKP-215, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5 BASIC

Gene PNKP, Length 1,600 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-215	ENST00000600910	PXDN	Q92626	1479 aa		28.03	■■■□□ 2.08
PNKP-215	ENST00000600910	BRD4	O60885	1362 aa	Predicted RBP	28.02	■■■□□ 2.08
PNKP-215	ENST00000600910	PAK3	O75914	559 aa	Predicted RBP	28.01	■■■□□ 2.07
PNKP-215	ENST00000600910	CGNL1	Q0VF96	1302 aa		28.01	■■■□□ 2.07
PNKP-215	ENST00000600910	TRPM3	Q9HCF6	1732 aa	Predicted RBP	28.01	■■■□□ 2.07
PNKP-215	ENST00000600910	AHDC1	Q5TGY3	1603 aa	Predicted RBP	28	■■■□□ 2.07
PNKP-215	ENST00000600910	SOS2	Q07890	1332 aa	Predicted RBP	28	■■■□□ 2.07
PNKP-215	ENST00000600910	AMER1	Q5JTC6	1135 aa	Predicted RBP	28	■■■□□ 2.07
PNKP-215	ENST00000600910	TTC21A	Q8NDW8	1320 aa		27.99	■■■□□ 2.07
PNKP-215	ENST00000600910	DIEXF	Q68CQ4	756 aa	Known RBP	27.98	■■■□□ 2.07
PNKP-215	ENST00000600910	SBNO1	A3KN83	1393 aa		27.97	■■■□□ 2.07
PNKP-215	ENST00000600910	FYB1	O15117	783 aa		27.96	■■■□□ 2.07
PNKP-215	ENST00000600910	CNGB1	Q14028	1251 aa	Predicted RBP	27.96	■■■□□ 2.07
PNKP-215	ENST00000600910	NME9	Q86XW9	330 aa		27.96	■■■□□ 2.07
PNKP-215	ENST00000600910	KIF20B	Q96Q89	1820 aa		27.96	■■■□□ 2.07
PNKP-215	ENST00000600910	CC2D1B	Q5T0F9	858 aa	Known RBP	27.95	■■■□□ 2.06
PNKP-215	ENST00000600910	PIK3C2A	O00443	1686 aa		27.95	■■■□□ 2.06
PNKP-215	ENST00000600910	ABTB2	Q8N961	1025 aa		27.94	■■■□□ 2.06
PNKP-215	ENST00000600910	GGNBP2	Q9H3C7	697 aa		27.94	■■■□□ 2.06
PNKP-215	ENST00000600910	NPC1L1	Q9UHC9	1359 aa		27.94	■■■□□ 2.06
PNKP-215	ENST00000600910	PHLPP1	O60346	1717 aa		27.94	■■■□□ 2.06
PNKP-215	ENST00000600910	TNS3	Q68CZ2	1445 aa		27.93	■■■□□ 2.06
PNKP-215	ENST00000600910	NSD2	O96028	1365 aa		27.92	■■■□□ 2.06
PNKP-215	ENST00000600910	ALS2	Q96Q42	1657 aa		27.92	■■■□□ 2.06
PNKP-215	ENST00000600910	SPATA31A3	Q5VYP0	1347 aa		27.92	■■■□□ 2.06
PNKP-215	ENST00000600910	LMOD2	Q6P5Q4	547 aa		27.92	■■■□□ 2.06
PNKP-215	ENST00000600910	ZRANB1	Q9UGI0	708 aa		27.92	■■■□□ 2.06
PNKP-215	ENST00000600910	NUTM2G	Q5VZR2	741 aa		27.9	■■■□□ 2.06
PNKP-215	ENST00000600910	COL16A1	Q07092	1604 aa	Predicted RBP	27.89	■■■□□ 2.06
PNKP-215	ENST00000600910	ANKRD26	Q9UPS8	1709 aa		27.88	■■■□□ 2.05
PNKP-215	ENST00000600910	NLRP6	P59044	892 aa		27.88	■■■□□ 2.05
PNKP-215	ENST00000600910	USP31	Q70CQ4	1352 aa		27.87	■■■□□ 2.05
PNKP-215	ENST00000600910	OVOS2	A0A0J9YW53	1432 aa		27.87	■■■□□ 2.05
PNKP-215	ENST00000600910	OVOS2	Q6IE36	1432 aa		27.87	■■■□□ 2.05
PNKP-215	ENST00000600910	LRRC59	Q96AG4	307 aa	Known RBP	27.87	■■■□□ 2.05
PNKP-215	ENST00000600910	COG3	Q96JB2	828 aa		27.87	■■■□□ 2.05
PNKP-215	ENST00000600910	ARHGEF10	O15013	1369 aa		27.86	■■■□□ 2.05
PNKP-215	ENST00000600910	USP54	Q70EL1	1684 aa		27.84	■■■□□ 2.05
PNKP-215	ENST00000600910	ANP32C	O43423	234 aa		27.84	■■■□□ 2.05
PNKP-215	ENST00000600910	MORC1	Q86VD1	984 aa		27.84	■■■□□ 2.05
PNKP-215	ENST00000600910	NLRP13	Q86W25	1043 aa		27.84	■■■□□ 2.05
PNKP-215	ENST00000600910	MARF1	Q9Y4F3	1742 aa	Known RBP	27.84	■■■□□ 2.05
PNKP-215	ENST00000600910	PRKRIP1	Q9H875	184 aa	Predicted RBP	27.82	■■■□□ 2.04
PNKP-215	ENST00000600910	PARD3	Q8TEW0	1356 aa		27.82	■■■□□ 2.04
PNKP-215	ENST00000600910	PLEKHG5	O94827	1062 aa		27.81	■■■□□ 2.04
PNKP-215	ENST00000600910	HSPA1L	P34931	641 aa		27.8	■■■□□ 2.04
PNKP-215	ENST00000600910	TNNT2	P45379	298 aa	Predicted RBP	27.79	■■■□□ 2.04
PNKP-215	ENST00000600910	RALBP1	Q15311	655 aa		27.79	■■■□□ 2.04
PNKP-215	ENST00000600910	USP19	O94966	1318 aa		27.78	■■■□□ 2.04
PNKP-215	ENST00000600910	MED1	Q15648	1581 aa	Predicted RBP	27.78	■■■□□ 2.04
PNKP-215	ENST00000600910	PNPLA6	Q8IY17	1366 aa		27.77	■■■□□ 2.04
PNKP-215	ENST00000600910	FBXO41	Q8TF61	875 aa		27.76	■■■□□ 2.03
PNKP-215	ENST00000600910	SLIT3	O75094	1523 aa		27.75	■■■□□ 2.03
PNKP-215	ENST00000600910	SOX12	O15370	315 aa		27.75	■■■□□ 2.03
PNKP-215	ENST00000600910	CABLES1	Q8TDN4	633 aa		27.75	■■■□□ 2.03
PNKP-215	ENST00000600910	CRYBG1	Q9Y4K1	1723 aa		27.75	■■■□□ 2.03
PNKP-215	ENST00000600910	COL22A1	Q8NFW1	1626 aa	Predicted RBP	27.74	■■■□□ 2.03
PNKP-215	ENST00000600910	PHRF1	Q9P1Y6	1649 aa	Known RBP	27.74	■■■□□ 2.03
PNKP-215	ENST00000600910	FBLN1	P23142	703 aa		27.74	■■■□□ 2.03
PNKP-215	ENST00000600910	GC	P02774	474 aa		27.72	■■■□□ 2.03
PNKP-215	ENST00000600910	KCNH5	Q8NCM2	988 aa		27.72	■■■□□ 2.03
PNKP-215	ENST00000600910	SHPRH	Q149N8	1683 aa		27.71	■■■□□ 2.03
PNKP-215	ENST00000600910	AATK	Q6ZMQ8	1374 aa		27.71	■■■□□ 2.03
PNKP-215	ENST00000600910	JCAD	Q9P266	1359 aa		27.71	■■■□□ 2.03
PNKP-215	ENST00000600910	PPP2R1A	P30153	589 aa		27.7	■■■□□ 2.03
PNKP-215	ENST00000600910	ABCA3	Q99758	1704 aa		27.7	■■■□□ 2.03
PNKP-215	ENST00000600910	NFAT5	O94916	1531 aa		27.7	■■■□□ 2.03
PNKP-215	ENST00000600910	MYBBP1A	Q9BQG0	1328 aa	Known RBP	27.7	■■■□□ 2.03
PNKP-215	ENST00000600910	MIER1	Q8N108	512 aa		27.68	■■■□□ 2.02
PNKP-215	ENST00000600910	HAP1	P54257	671 aa	Predicted RBP	27.67	■■■□□ 2.02
PNKP-215	ENST00000600910	RRS1	Q15050	365 aa	Known RBP	27.67	■■■□□ 2.02
PNKP-215	ENST00000600910	MAP2	P11137	1827 aa	Known RBP	27.67	■■■□□ 2.02
PNKP-215	ENST00000600910	POLK	Q9UBT6	870 aa		27.66	■■■□□ 2.02
PNKP-215	ENST00000600910	EMILIN1	Q9Y6C2	1016 aa		27.64	■■■□□ 2.02
PNKP-215	ENST00000600910	ZC3H6	P61129	1189 aa	Known RBP	27.63	■■■□□ 2.01
PNKP-215	ENST00000600910	MAP3K19	Q56UN5	1328 aa		27.63	■■■□□ 2.01
PNKP-215	ENST00000600910	MTHFS	P49914	203 aa		27.63	■■■□□ 2.01
PNKP-215	ENST00000600910	LTN1	O94822	1766 aa		27.62	■■■□□ 2.01
PNKP-215	ENST00000600910	PPM1G	O15355	546 aa	Predicted RBP	27.61	■■■□□ 2.01
PNKP-215	ENST00000600910	SMG6	Q86US8	1419 aa	Known RBP	27.61	■■■□□ 2.01
PNKP-215	ENST00000600910	ARHGEF25	Q86VW2	580 aa		27.61	■■■□□ 2.01
PNKP-215	ENST00000600910	ZBTB7C	A1YPR0	619 aa		27.6	■■■□□ 2.01
PNKP-215	ENST00000600910	NUTM2B	A6NNL0	878 aa	Predicted RBP	27.59	■■■□□ 2.01
PNKP-215	ENST00000600910	NUTM2E	B1AL46	878 aa	Predicted RBP	27.59	■■■□□ 2.01
PNKP-215	ENST00000600910	NUTM2A	Q8IVF1	878 aa	Predicted RBP	27.59	■■■□□ 2.01
PNKP-215	ENST00000600910	CPD	O75976	1380 aa		27.59	■■■□□ 2.01
PNKP-215	ENST00000600910	KIAA0232	Q92628	1395 aa		27.59	■■■□□ 2.01
PNKP-215	ENST00000600910	PEAK1	Q9H792	1746 aa		27.59	■■■□□ 2.01
PNKP-215	ENST00000600910	SPATA31A6	Q5VVP1	1343 aa		27.58	■■■□□ 2.01
PNKP-215	ENST00000600910	AMPH	P49418	695 aa		27.57	■■■□□ 2
PNKP-215	ENST00000600910	KIF24	Q5T7B8	1368 aa		27.55	■■■□□ 2
PNKP-215	ENST00000600910	CDK12	Q9NYV4	1490 aa	Predicted RBP	27.55	■■■□□ 2
PNKP-215	ENST00000600910	PRDM11	Q9NQV5	511 aa		27.55	■■■□□ 2
PNKP-215	ENST00000600910	FLT4	P35916	1363 aa		27.55	■■■□□ 2
PNKP-215	ENST00000600910	HOXC9	P31274	260 aa		27.54	■■■□□ 2
PNKP-215	ENST00000600910	CHRNA2	Q15822	529 aa		27.54	■■■□□ 2
PNKP-215	ENST00000600910	CCDC184	Q52MB2	194 aa		27.54	■■■□□ 2
PNKP-215	ENST00000600910	RTL1	A6NKG5	1358 aa		27.54	■■■□□ 2
PNKP-215	ENST00000600910	ADAMTS2	O95450	1211 aa		27.53	■■■□□ 2
PNKP-215	ENST00000600910	IP6K1	Q92551	441 aa		27.52	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms