RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-222	ENST00000600320	PANK3	Q9H999	370 aa		27.67	■■■□□ 2.02
SHKBP1-222	ENST00000600320	NRK	Q7Z2Y5	1582 aa		27.66	■■■□□ 2.02
SHKBP1-222	ENST00000600320	SBNO1	A3KN83	1393 aa		27.65	■■■□□ 2.02
SHKBP1-222	ENST00000600320	SPATA31A3	Q5VYP0	1347 aa		27.63	■■■□□ 2.01
SHKBP1-222	ENST00000600320	TTC21B	Q7Z4L5	1316 aa		27.63	■■■□□ 2.01
SHKBP1-222	ENST00000600320	EDC4	Q6P2E9	1401 aa	Known RBP	27.62	■■■□□ 2.01
SHKBP1-222	ENST00000600320	TNS3	Q68CZ2	1445 aa		27.61	■■■□□ 2.01
SHKBP1-222	ENST00000600320	NSD3	Q9BZ95	1437 aa		27.61	■■■□□ 2.01
SHKBP1-222	ENST00000600320	PAK3	O75914	559 aa	Predicted RBP	27.61	■■■□□ 2.01
SHKBP1-222	ENST00000600320	BRD4	O60885	1362 aa	Predicted RBP	27.6	■■■□□ 2.01
SHKBP1-222	ENST00000600320	ALS2	Q96Q42	1657 aa		27.6	■■■□□ 2.01
SHKBP1-222	ENST00000600320	ILDR2	Q71H61	639 aa		27.6	■■■□□ 2.01
SHKBP1-222	ENST00000600320	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	27.59	■■■□□ 2.01
SHKBP1-222	ENST00000600320	LRRC59	Q96AG4	307 aa	Known RBP	27.58	■■■□□ 2.01
SHKBP1-222	ENST00000600320	DDX10	Q13206	875 aa	Known RBP	27.57	■■■□□ 2
SHKBP1-222	ENST00000600320	NME9	Q86XW9	330 aa		27.56	■■■□□ 2
SHKBP1-222	ENST00000600320	TTC21A	Q8NDW8	1320 aa		27.56	■■■□□ 2
SHKBP1-222	ENST00000600320	PIK3C2A	O00443	1686 aa		27.56	■■■□□ 2
SHKBP1-222	ENST00000600320	LMOD2	Q6P5Q4	547 aa		27.55	■■■□□ 2
SHKBP1-222	ENST00000600320	PNPLA6	Q8IY17	1366 aa		27.55	■■■□□ 2
SHKBP1-222	ENST00000600320	PER1	O15534	1290 aa	Predicted RBP	27.54	■■■□□ 2
SHKBP1-222	ENST00000600320	NUTM2G	Q5VZR2	741 aa		27.54	■■■□□ 2
SHKBP1-222	ENST00000600320	ZRANB1	Q9UGI0	708 aa		27.54	■■■□□ 2
SHKBP1-222	ENST00000600320	ABTB2	Q8N961	1025 aa		27.53	■■■□□ 2
SHKBP1-222	ENST00000600320	ARHGEF10	O15013	1369 aa		27.51	■■□□□ 1.99
SHKBP1-222	ENST00000600320	JCAD	Q9P266	1359 aa		27.51	■■□□□ 1.99
SHKBP1-222	ENST00000600320	SHPRH	Q149N8	1683 aa		27.49	■■□□□ 1.99
SHKBP1-222	ENST00000600320	SOCS7	O14512	581 aa		27.49	■■□□□ 1.99
SHKBP1-222	ENST00000600320	FYB1	O15117	783 aa		27.49	■■□□□ 1.99
SHKBP1-222	ENST00000600320	PLEKHG5	O94827	1062 aa		27.49	■■□□□ 1.99
SHKBP1-222	ENST00000600320	MARF1	Q9Y4F3	1742 aa	Known RBP	27.49	■■□□□ 1.99
SHKBP1-222	ENST00000600320	COL22A1	Q8NFW1	1626 aa	Predicted RBP	27.49	■■□□□ 1.99
SHKBP1-222	ENST00000600320	USP31	Q70CQ4	1352 aa		27.48	■■□□□ 1.99
SHKBP1-222	ENST00000600320	KIF20B	Q96Q89	1820 aa		27.48	■■□□□ 1.99
SHKBP1-222	ENST00000600320	GGNBP2	Q9H3C7	697 aa		27.48	■■□□□ 1.99
SHKBP1-222	ENST00000600320	KNSTRN	Q9Y448	316 aa		27.48	■■□□□ 1.99
SHKBP1-222	ENST00000600320	NLRP6	P59044	892 aa		27.47	■■□□□ 1.99
SHKBP1-222	ENST00000600320	MED1	Q15648	1581 aa	Predicted RBP	27.47	■■□□□ 1.99
SHKBP1-222	ENST00000600320	CGNL1	Q0VF96	1302 aa		27.46	■■□□□ 1.99
SHKBP1-222	ENST00000600320	AMER1	Q5JTC6	1135 aa	Predicted RBP	27.46	■■□□□ 1.99
SHKBP1-222	ENST00000600320	CABLES1	Q8TDN4	633 aa		27.46	■■□□□ 1.99
SHKBP1-222	ENST00000600320	OVOS2	A0A0J9YW53	1432 aa		27.46	■■□□□ 1.99
SHKBP1-222	ENST00000600320	OVOS2	Q6IE36	1432 aa		27.46	■■□□□ 1.99
SHKBP1-222	ENST00000600320	CRYBG1	Q9Y4K1	1723 aa		27.45	■■□□□ 1.99
SHKBP1-222	ENST00000600320	USP54	Q70EL1	1684 aa		27.45	■■□□□ 1.98
SHKBP1-222	ENST00000600320	USP19	O94966	1318 aa		27.44	■■□□□ 1.98
SHKBP1-222	ENST00000600320	NLRP13	Q86W25	1043 aa		27.44	■■□□□ 1.98
SHKBP1-222	ENST00000600320	ABCA3	Q99758	1704 aa		27.42	■■□□□ 1.98
SHKBP1-222	ENST00000600320	PHRF1	Q9P1Y6	1649 aa	Known RBP	27.41	■■□□□ 1.98
SHKBP1-222	ENST00000600320	SLIT3	O75094	1523 aa		27.41	■■□□□ 1.98
SHKBP1-222	ENST00000600320	COG3	Q96JB2	828 aa		27.39	■■□□□ 1.98
SHKBP1-222	ENST00000600320	NSD2	O96028	1365 aa		27.38	■■□□□ 1.97
SHKBP1-222	ENST00000600320	CC2D1B	Q5T0F9	858 aa	Known RBP	27.38	■■□□□ 1.97
SHKBP1-222	ENST00000600320	ANKRD26	Q9UPS8	1709 aa		27.38	■■□□□ 1.97
SHKBP1-222	ENST00000600320	NPC1L1	Q9UHC9	1359 aa		27.37	■■□□□ 1.97
SHKBP1-222	ENST00000600320	NUTM2B	A6NNL0	878 aa	Predicted RBP	27.37	■■□□□ 1.97
SHKBP1-222	ENST00000600320	NUTM2E	B1AL46	878 aa	Predicted RBP	27.37	■■□□□ 1.97
SHKBP1-222	ENST00000600320	CNGB1	Q14028	1251 aa	Predicted RBP	27.37	■■□□□ 1.97
SHKBP1-222	ENST00000600320	NUTM2A	Q8IVF1	878 aa	Predicted RBP	27.37	■■□□□ 1.97
SHKBP1-222	ENST00000600320	SPATA31A6	Q5VVP1	1343 aa		27.37	■■□□□ 1.97
SHKBP1-222	ENST00000600320	LRP6	O75581	1613 aa		27.36	■■□□□ 1.97
SHKBP1-222	ENST00000600320	SOX12	O15370	315 aa		27.35	■■□□□ 1.97
SHKBP1-222	ENST00000600320	GC	P02774	474 aa		27.35	■■□□□ 1.97
SHKBP1-222	ENST00000600320	NFAT5	O94916	1531 aa		27.34	■■□□□ 1.97
SHKBP1-222	ENST00000600320	FBLN1	P23142	703 aa		27.33	■■□□□ 1.97
SHKBP1-222	ENST00000600320	HAP1	P54257	671 aa	Predicted RBP	27.32	■■□□□ 1.96
SHKBP1-222	ENST00000600320	ZC3H6	P61129	1189 aa	Known RBP	27.3	■■□□□ 1.96
SHKBP1-222	ENST00000600320	MORC1	Q86VD1	984 aa		27.3	■■□□□ 1.96
SHKBP1-222	ENST00000600320	KCNH5	Q8NCM2	988 aa		27.3	■■□□□ 1.96
SHKBP1-222	ENST00000600320	ADAMTS2	O95450	1211 aa		27.29	■■□□□ 1.96
SHKBP1-222	ENST00000600320	TNNT2	P45379	298 aa	Predicted RBP	27.28	■■□□□ 1.96
SHKBP1-222	ENST00000600320	KIAA0232	Q92628	1395 aa		27.27	■■□□□ 1.96
SHKBP1-222	ENST00000600320	CPD	O75976	1380 aa		27.25	■■□□□ 1.95
SHKBP1-222	ENST00000600320	RRS1	Q15050	365 aa	Known RBP	27.24	■■□□□ 1.95
SHKBP1-222	ENST00000600320	ARHGEF25	Q86VW2	580 aa		27.24	■■□□□ 1.95
SHKBP1-222	ENST00000600320	AATK	Q6ZMQ8	1374 aa		27.23	■■□□□ 1.95
SHKBP1-222	ENST00000600320	MAP3K19	Q56UN5	1328 aa		27.23	■■□□□ 1.95
SHKBP1-222	ENST00000600320	ZBTB7C	A1YPR0	619 aa		27.23	■■□□□ 1.95
SHKBP1-222	ENST00000600320	CHRNA2	Q15822	529 aa		27.23	■■□□□ 1.95
SHKBP1-222	ENST00000600320	PARD3	Q8TEW0	1356 aa		27.22	■■□□□ 1.95
SHKBP1-222	ENST00000600320	FAM83G	A6ND36	823 aa		27.22	■■□□□ 1.95
SHKBP1-222	ENST00000600320	PRDM11	Q9NQV5	511 aa		27.21	■■□□□ 1.95
SHKBP1-222	ENST00000600320	LTN1	O94822	1766 aa		27.21	■■□□□ 1.95
SHKBP1-222	ENST00000600320	MEX3C	Q5U5Q3	659 aa	Known RBP	27.19	■■□□□ 1.94
SHKBP1-222	ENST00000600320	POLK	Q9UBT6	870 aa		27.19	■■□□□ 1.94
SHKBP1-222	ENST00000600320	EMILIN1	Q9Y6C2	1016 aa		27.19	■■□□□ 1.94
SHKBP1-222	ENST00000600320	COL18A1	P39060	1754 aa		27.19	■■□□□ 1.94
SHKBP1-222	ENST00000600320	PEAK1	Q9H792	1746 aa		27.19	■■□□□ 1.94
SHKBP1-222	ENST00000600320	C8orf37	Q96NL8	207 aa		27.18	■■□□□ 1.94
SHKBP1-222	ENST00000600320	MAP2	P11137	1827 aa	Known RBP	27.18	■■□□□ 1.94
SHKBP1-222	ENST00000600320	LMO7	Q8WWI1	1683 aa		27.17	■■□□□ 1.94
SHKBP1-222	ENST00000600320	COL14A1	Q05707	1796 aa	Known RBP	27.17	■■□□□ 1.94
SHKBP1-222	ENST00000600320	PRKRIP1	Q9H875	184 aa	Predicted RBP	27.16	■■□□□ 1.94
SHKBP1-222	ENST00000600320	SMG6	Q86US8	1419 aa	Known RBP	27.15	■■□□□ 1.94
SHKBP1-222	ENST00000600320	PLCH1	Q4KWH8	1693 aa		27.14	■■□□□ 1.94
SHKBP1-222	ENST00000600320	PPP2R1A	P30153	589 aa		27.14	■■□□□ 1.94
SHKBP1-222	ENST00000600320	RALBP1	Q15311	655 aa		27.14	■■□□□ 1.94
SHKBP1-222	ENST00000600320	AXIN2	Q9Y2T1	843 aa		27.14	■■□□□ 1.94
SHKBP1-222	ENST00000600320	CAMTA1	Q9Y6Y1	1673 aa		27.14	■■□□□ 1.93
SHKBP1-222	ENST00000600320	SLIT2	O94813	1529 aa		27.13	■■□□□ 1.93

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms