RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 PANK3Q9H999 370 aa27.67■■■□□ 2.02
SHKBP1-222ENST00000600320 NRKQ7Z2Y5 1582 aa27.66■■■□□ 2.02
SHKBP1-222ENST00000600320 SBNO1A3KN83 1393 aa27.65■■■□□ 2.02
SHKBP1-222ENST00000600320 SPATA31A3Q5VYP0 1347 aa27.63■■■□□ 2.01
SHKBP1-222ENST00000600320 TTC21BQ7Z4L5 1316 aa27.63■■■□□ 2.01
SHKBP1-222ENST00000600320 EDC4Q6P2E9 1401 aaKnown RBP27.62■■■□□ 2.01
SHKBP1-222ENST00000600320 TNS3Q68CZ2 1445 aa27.61■■■□□ 2.01
SHKBP1-222ENST00000600320 NSD3Q9BZ95 1437 aa27.61■■■□□ 2.01
SHKBP1-222ENST00000600320 PAK3O75914 559 aaPredicted RBP27.61■■■□□ 2.01
SHKBP1-222ENST00000600320 BRD4O60885 1362 aaPredicted RBP27.6■■■□□ 2.01
SHKBP1-222ENST00000600320 ALS2Q96Q42 1657 aa27.6■■■□□ 2.01
SHKBP1-222ENST00000600320 ILDR2Q71H61 639 aa27.6■■■□□ 2.01
SHKBP1-222ENST00000600320 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.59■■■□□ 2.01
SHKBP1-222ENST00000600320 LRRC59Q96AG4 307 aaKnown RBP27.58■■■□□ 2.01
SHKBP1-222ENST00000600320 DDX10Q13206 875 aaKnown RBP27.57■■■□□ 2
SHKBP1-222ENST00000600320 NME9Q86XW9 330 aa27.56■■■□□ 2
SHKBP1-222ENST00000600320 TTC21AQ8NDW8 1320 aa27.56■■■□□ 2
SHKBP1-222ENST00000600320 PIK3C2AO00443 1686 aa27.56■■■□□ 2
SHKBP1-222ENST00000600320 LMOD2Q6P5Q4 547 aa27.55■■■□□ 2
SHKBP1-222ENST00000600320 PNPLA6Q8IY17 1366 aa27.55■■■□□ 2
SHKBP1-222ENST00000600320 PER1O15534 1290 aaPredicted RBP27.54■■■□□ 2
SHKBP1-222ENST00000600320 NUTM2GQ5VZR2 741 aa27.54■■■□□ 2
SHKBP1-222ENST00000600320 ZRANB1Q9UGI0 708 aa27.54■■■□□ 2
SHKBP1-222ENST00000600320 ABTB2Q8N961 1025 aa27.53■■■□□ 2
SHKBP1-222ENST00000600320 ARHGEF10O15013 1369 aa27.51■■□□□ 1.99
SHKBP1-222ENST00000600320 JCADQ9P266 1359 aa27.51■■□□□ 1.99
SHKBP1-222ENST00000600320 SHPRHQ149N8 1683 aa27.49■■□□□ 1.99
SHKBP1-222ENST00000600320 SOCS7O14512 581 aa27.49■■□□□ 1.99
SHKBP1-222ENST00000600320 FYB1O15117 783 aa27.49■■□□□ 1.99
SHKBP1-222ENST00000600320 PLEKHG5O94827 1062 aa27.49■■□□□ 1.99
SHKBP1-222ENST00000600320 MARF1Q9Y4F3 1742 aaKnown RBP27.49■■□□□ 1.99
SHKBP1-222ENST00000600320 COL22A1Q8NFW1 1626 aaPredicted RBP27.49■■□□□ 1.99
SHKBP1-222ENST00000600320 USP31Q70CQ4 1352 aa27.48■■□□□ 1.99
SHKBP1-222ENST00000600320 KIF20BQ96Q89 1820 aa27.48■■□□□ 1.99
SHKBP1-222ENST00000600320 GGNBP2Q9H3C7 697 aa27.48■■□□□ 1.99
SHKBP1-222ENST00000600320 KNSTRNQ9Y448 316 aa27.48■■□□□ 1.99
SHKBP1-222ENST00000600320 NLRP6P59044 892 aa27.47■■□□□ 1.99
SHKBP1-222ENST00000600320 MED1Q15648 1581 aaPredicted RBP27.47■■□□□ 1.99
SHKBP1-222ENST00000600320 CGNL1Q0VF96 1302 aa27.46■■□□□ 1.99
SHKBP1-222ENST00000600320 AMER1Q5JTC6 1135 aaPredicted RBP27.46■■□□□ 1.99
SHKBP1-222ENST00000600320 CABLES1Q8TDN4 633 aa27.46■■□□□ 1.99
SHKBP1-222ENST00000600320 OVOS2A0A0J9YW53 1432 aa27.46■■□□□ 1.99
SHKBP1-222ENST00000600320 OVOS2Q6IE36 1432 aa27.46■■□□□ 1.99
SHKBP1-222ENST00000600320 CRYBG1Q9Y4K1 1723 aa27.45■■□□□ 1.99
SHKBP1-222ENST00000600320 USP54Q70EL1 1684 aa27.45■■□□□ 1.98
SHKBP1-222ENST00000600320 USP19O94966 1318 aa27.44■■□□□ 1.98
SHKBP1-222ENST00000600320 NLRP13Q86W25 1043 aa27.44■■□□□ 1.98
SHKBP1-222ENST00000600320 ABCA3Q99758 1704 aa27.42■■□□□ 1.98
SHKBP1-222ENST00000600320 PHRF1Q9P1Y6 1649 aaKnown RBP27.41■■□□□ 1.98
SHKBP1-222ENST00000600320 SLIT3O75094 1523 aa27.41■■□□□ 1.98
SHKBP1-222ENST00000600320 COG3Q96JB2 828 aa27.39■■□□□ 1.98
SHKBP1-222ENST00000600320 NSD2O96028 1365 aa27.38■■□□□ 1.97
SHKBP1-222ENST00000600320 CC2D1BQ5T0F9 858 aaKnown RBP27.38■■□□□ 1.97
SHKBP1-222ENST00000600320 ANKRD26Q9UPS8 1709 aa27.38■■□□□ 1.97
SHKBP1-222ENST00000600320 NPC1L1Q9UHC9 1359 aa27.37■■□□□ 1.97
SHKBP1-222ENST00000600320 NUTM2BA6NNL0 878 aaPredicted RBP27.37■■□□□ 1.97
SHKBP1-222ENST00000600320 NUTM2EB1AL46 878 aaPredicted RBP27.37■■□□□ 1.97
SHKBP1-222ENST00000600320 CNGB1Q14028 1251 aaPredicted RBP27.37■■□□□ 1.97
SHKBP1-222ENST00000600320 NUTM2AQ8IVF1 878 aaPredicted RBP27.37■■□□□ 1.97
SHKBP1-222ENST00000600320 SPATA31A6Q5VVP1 1343 aa27.37■■□□□ 1.97
SHKBP1-222ENST00000600320 LRP6O75581 1613 aa27.36■■□□□ 1.97
SHKBP1-222ENST00000600320 SOX12O15370 315 aa27.35■■□□□ 1.97
SHKBP1-222ENST00000600320 GCP02774 474 aa27.35■■□□□ 1.97
SHKBP1-222ENST00000600320 NFAT5O94916 1531 aa27.34■■□□□ 1.97
SHKBP1-222ENST00000600320 FBLN1P23142 703 aa27.33■■□□□ 1.97
SHKBP1-222ENST00000600320 HAP1P54257 671 aaPredicted RBP27.32■■□□□ 1.96
SHKBP1-222ENST00000600320 ZC3H6P61129 1189 aaKnown RBP27.3■■□□□ 1.96
SHKBP1-222ENST00000600320 MORC1Q86VD1 984 aa27.3■■□□□ 1.96
SHKBP1-222ENST00000600320 KCNH5Q8NCM2 988 aa27.3■■□□□ 1.96
SHKBP1-222ENST00000600320 ADAMTS2O95450 1211 aa27.29■■□□□ 1.96
SHKBP1-222ENST00000600320 TNNT2P45379 298 aaPredicted RBP27.28■■□□□ 1.96
SHKBP1-222ENST00000600320 KIAA0232Q92628 1395 aa27.27■■□□□ 1.96
SHKBP1-222ENST00000600320 CPDO75976 1380 aa27.25■■□□□ 1.95
SHKBP1-222ENST00000600320 RRS1Q15050 365 aaKnown RBP27.24■■□□□ 1.95
SHKBP1-222ENST00000600320 ARHGEF25Q86VW2 580 aa27.24■■□□□ 1.95
SHKBP1-222ENST00000600320 AATKQ6ZMQ8 1374 aa27.23■■□□□ 1.95
SHKBP1-222ENST00000600320 MAP3K19Q56UN5 1328 aa27.23■■□□□ 1.95
SHKBP1-222ENST00000600320 ZBTB7CA1YPR0 619 aa27.23■■□□□ 1.95
SHKBP1-222ENST00000600320 CHRNA2Q15822 529 aa27.23■■□□□ 1.95
SHKBP1-222ENST00000600320 PARD3Q8TEW0 1356 aa27.22■■□□□ 1.95
SHKBP1-222ENST00000600320 FAM83GA6ND36 823 aa27.22■■□□□ 1.95
SHKBP1-222ENST00000600320 PRDM11Q9NQV5 511 aa27.21■■□□□ 1.95
SHKBP1-222ENST00000600320 LTN1O94822 1766 aa27.21■■□□□ 1.95
SHKBP1-222ENST00000600320 MEX3CQ5U5Q3 659 aaKnown RBP27.19■■□□□ 1.94
SHKBP1-222ENST00000600320 POLKQ9UBT6 870 aa27.19■■□□□ 1.94
SHKBP1-222ENST00000600320 EMILIN1Q9Y6C2 1016 aa27.19■■□□□ 1.94
SHKBP1-222ENST00000600320 COL18A1P39060 1754 aa27.19■■□□□ 1.94
SHKBP1-222ENST00000600320 PEAK1Q9H792 1746 aa27.19■■□□□ 1.94
SHKBP1-222ENST00000600320 C8orf37Q96NL8 207 aa27.18■■□□□ 1.94
SHKBP1-222ENST00000600320 MAP2P11137 1827 aaKnown RBP27.18■■□□□ 1.94
SHKBP1-222ENST00000600320 LMO7Q8WWI1 1683 aa27.17■■□□□ 1.94
SHKBP1-222ENST00000600320 COL14A1Q05707 1796 aaKnown RBP27.17■■□□□ 1.94
SHKBP1-222ENST00000600320 PRKRIP1Q9H875 184 aaPredicted RBP27.16■■□□□ 1.94
SHKBP1-222ENST00000600320 SMG6Q86US8 1419 aaKnown RBP27.15■■□□□ 1.94
SHKBP1-222ENST00000600320 PLCH1Q4KWH8 1693 aa27.14■■□□□ 1.94
SHKBP1-222ENST00000600320 PPP2R1AP30153 589 aa27.14■■□□□ 1.94
SHKBP1-222ENST00000600320 RALBP1Q15311 655 aa27.14■■□□□ 1.94
SHKBP1-222ENST00000600320 AXIN2Q9Y2T1 843 aa27.14■■□□□ 1.94
SHKBP1-222ENST00000600320 CAMTA1Q9Y6Y1 1673 aa27.14■■□□□ 1.93
SHKBP1-222ENST00000600320 SLIT2O94813 1529 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms