RNA–Protein interactions for RNA: ENST00000599144.5

IRF3-222, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,117 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-222	ENST00000599144	TULP4	Q9NRJ4	1543 aa		28.23	■■■□□ 2.11
IRF3-222	ENST00000599144	PSD	A5PKW4	1024 aa	Predicted RBP	28.2	■■■□□ 2.1
IRF3-222	ENST00000599144	NRAP	Q86VF7	1730 aa		28.2	■■■□□ 2.1
IRF3-222	ENST00000599144	ALS2	Q96Q42	1657 aa		28.19	■■■□□ 2.1
IRF3-222	ENST00000599144	NUTM2G	Q5VZR2	741 aa		28.18	■■■□□ 2.1
IRF3-222	ENST00000599144	EIF3A	Q14152	1382 aa	Known RBP	28.18	■■■□□ 2.1
IRF3-222	ENST00000599144	CHRNA2	Q15822	529 aa		28.16	■■■□□ 2.1
IRF3-222	ENST00000599144	NUDT16	Q96DE0	195 aa	Known RBP	28.16	■■■□□ 2.1
IRF3-222	ENST00000599144	PRDM11	Q9NQV5	511 aa		28.16	■■■□□ 2.1
IRF3-222	ENST00000599144	SPATA31A5	Q5VU36	1347 aa		28.16	■■■□□ 2.1
IRF3-222	ENST00000599144	SPATA31A7	Q8IWB4	1347 aa		28.16	■■■□□ 2.1
IRF3-222	ENST00000599144	BAG6	P46379	1132 aa		28.13	■■■□□ 2.09
IRF3-222	ENST00000599144	EN1	Q05925	392 aa	Predicted RBP	28.13	■■■□□ 2.09
IRF3-222	ENST00000599144	COL14A1	Q05707	1796 aa	Known RBP	28.13	■■■□□ 2.09
IRF3-222	ENST00000599144	ATP7B	P35670	1465 aa		28.13	■■■□□ 2.09
IRF3-222	ENST00000599144	KIAA0232	Q92628	1395 aa		28.11	■■■□□ 2.09
IRF3-222	ENST00000599144	ZC3H6	P61129	1189 aa	Known RBP	28.11	■■■□□ 2.09
IRF3-222	ENST00000599144	CDK19	Q9BWU1	502 aa		28.11	■■■□□ 2.09
IRF3-222	ENST00000599144	STRN4	Q9NRL3	753 aa		28.11	■■■□□ 2.09
IRF3-222	ENST00000599144	CRYBG1	Q9Y4K1	1723 aa		28.09	■■■□□ 2.09
IRF3-222	ENST00000599144	ARHGEF28	Q8N1W1	1705 aa	Known RBP	28.06	■■■□□ 2.08
IRF3-222	ENST00000599144	ACE	P12821	1306 aa		28.05	■■■□□ 2.08
IRF3-222	ENST00000599144	SPATA31A1	Q5TZJ5	1347 aa		28.05	■■■□□ 2.08
IRF3-222	ENST00000599144	USP35	Q9P2H5	1018 aa		28.05	■■■□□ 2.08
IRF3-222	ENST00000599144	HRC	P23327	699 aa		28.04	■■■□□ 2.08
IRF3-222	ENST00000599144	NBPF1	Q3BBV0	1214 aa		28.03	■■■□□ 2.08
IRF3-222	ENST00000599144	STAC3	Q96MF2	364 aa		28.03	■■■□□ 2.08
IRF3-222	ENST00000599144	THSD7A	Q9UPZ6	1657 aa		28.03	■■■□□ 2.08
IRF3-222	ENST00000599144	R3HDM1	Q15032	1099 aa	Known RBP	28.02	■■■□□ 2.08
IRF3-222	ENST00000599144	NBPF8	Q3BBV2	869 aa		28.02	■■■□□ 2.08
IRF3-222	ENST00000599144	EZH2	Q15910	746 aa	Known RBP	28.01	■■■□□ 2.07
IRF3-222	ENST00000599144	TRIM37	O94972	964 aa		28	■■■□□ 2.07
IRF3-222	ENST00000599144	POLR3A	O14802	1390 aa	Predicted RBP	27.99	■■■□□ 2.07
IRF3-222	ENST00000599144	CCDC61	Q9Y6R9	512 aa		27.98	■■■□□ 2.07
IRF3-222	ENST00000599144	PHRF1	Q9P1Y6	1649 aa	Known RBP	27.98	■■■□□ 2.07
IRF3-222	ENST00000599144	EVA1C	P58658	441 aa		27.96	■■■□□ 2.07
IRF3-222	ENST00000599144	LARP1	Q6PKG0	1096 aa	Known RBP	27.96	■■■□□ 2.07
IRF3-222	ENST00000599144	ABTB2	Q8N961	1025 aa		27.96	■■■□□ 2.07
IRF3-222	ENST00000599144	LRP5	O75197	1615 aa		27.96	■■■□□ 2.07
IRF3-222	ENST00000599144	ITSN1	Q15811	1721 aa		27.95	■■■□□ 2.07
IRF3-222	ENST00000599144	PLEKHG3	A1L390	1219 aa		27.95	■■■□□ 2.06
IRF3-222	ENST00000599144	SSH2	Q76I76	1423 aa		27.94	■■■□□ 2.06
IRF3-222	ENST00000599144	CABP2	Q9NPB3	220 aa		27.94	■■■□□ 2.06
IRF3-222	ENST00000599144	RGPD1	P0DJD0	1748 aa		27.93	■■■□□ 2.06
IRF3-222	ENST00000599144	SRPK2	P78362	688 aa	Known RBP	27.93	■■■□□ 2.06
IRF3-222	ENST00000599144	TOPAZ1	Q8N9V7	1692 aa		27.92	■■■□□ 2.06
IRF3-222	ENST00000599144	CAMKK2	Q96RR4	588 aa		27.92	■■■□□ 2.06
IRF3-222	ENST00000599144	CAMTA1	Q9Y6Y1	1673 aa		27.91	■■■□□ 2.06
IRF3-222	ENST00000599144	ZBTB7C	A1YPR0	619 aa		27.91	■■■□□ 2.06
IRF3-222	ENST00000599144	APBA3	O96018	575 aa		27.91	■■■□□ 2.06
IRF3-222	ENST00000599144	FAM196A	Q6ZSG2	479 aa		27.91	■■■□□ 2.06
IRF3-222	ENST00000599144	TNS1	Q9HBL0	1735 aa	Known RBP	27.91	■■■□□ 2.06
IRF3-222	ENST00000599144	DISP2	A7MBM2	1401 aa		27.91	■■■□□ 2.06
IRF3-222	ENST00000599144	NRK	Q7Z2Y5	1582 aa		27.9	■■■□□ 2.06
IRF3-222	ENST00000599144	PPIP5K1	Q6PFW1	1433 aa		27.89	■■■□□ 2.06
IRF3-222	ENST00000599144	USP19	O94966	1318 aa		27.89	■■■□□ 2.05
IRF3-222	ENST00000599144	PDE3B	Q13370	1112 aa		27.88	■■■□□ 2.05
IRF3-222	ENST00000599144	GC	P02774	474 aa		27.86	■■■□□ 2.05
IRF3-222	ENST00000599144	BARGIN	Q6ZT62	677 aa		27.86	■■■□□ 2.05
IRF3-222	ENST00000599144	CENPJ	Q9HC77	1338 aa	Predicted RBP	27.86	■■■□□ 2.05
IRF3-222	ENST00000599144	TCP11L2	Q8N4U5	519 aa		27.85	■■■□□ 2.05
IRF3-222	ENST00000599144	CPD	O75976	1380 aa		27.84	■■■□□ 2.05
IRF3-222	ENST00000599144	NLRP13	Q86W25	1043 aa		27.83	■■■□□ 2.05
IRF3-222	ENST00000599144	CABP1	Q9NZU7	370 aa		27.82	■■■□□ 2.04
IRF3-222	ENST00000599144	LMO7	Q8WWI1	1683 aa		27.81	■■■□□ 2.04
IRF3-222	ENST00000599144	KIAA1210	Q9ULL0	1709 aa		27.81	■■■□□ 2.04
IRF3-222	ENST00000599144	COL5A2	P05997	1499 aa	Predicted RBP	27.78	■■■□□ 2.04
IRF3-222	ENST00000599144	NLRP6	P59044	892 aa		27.77	■■■□□ 2.04
IRF3-222	ENST00000599144	L3MBTL2	Q969R5	705 aa		27.75	■■■□□ 2.03
IRF3-222	ENST00000599144	USP6	P35125	1406 aa		27.75	■■■□□ 2.03
IRF3-222	ENST00000599144	THRAP3	Q9Y2W1	955 aa	Known RBP	27.73	■■■□□ 2.03
IRF3-222	ENST00000599144	PARD3	Q8TEW0	1356 aa		27.73	■■■□□ 2.03
IRF3-222	ENST00000599144	SIN3A	Q96ST3	1273 aa		27.72	■■■□□ 2.03
IRF3-222	ENST00000599144	QRICH2	Q9H0J4	1663 aa		27.72	■■■□□ 2.03
IRF3-222	ENST00000599144	SOX12	O15370	315 aa		27.71	■■■□□ 2.03
IRF3-222	ENST00000599144	CRB1	P82279	1406 aa		27.71	■■■□□ 2.03
IRF3-222	ENST00000599144	PTF1A	Q7RTS3	328 aa		27.7	■■■□□ 2.02
IRF3-222	ENST00000599144	AXIN2	Q9Y2T1	843 aa		27.7	■■■□□ 2.02
IRF3-222	ENST00000599144	TOM1L2	Q6ZVM7	507 aa		27.69	■■■□□ 2.02
IRF3-222	ENST00000599144	NBPF14	Q5TI25	921 aa		27.68	■■■□□ 2.02
IRF3-222	ENST00000599144	AATK	Q6ZMQ8	1374 aa		27.68	■■■□□ 2.02
IRF3-222	ENST00000599144	RREB1	Q92766	1687 aa		27.68	■■■□□ 2.02
IRF3-222	ENST00000599144	SLIT3	O75094	1523 aa		27.67	■■■□□ 2.02
IRF3-222	ENST00000599144	NUP188	Q5SRE5	1749 aa		27.67	■■■□□ 2.02
IRF3-222	ENST00000599144	BRD4	O60885	1362 aa	Predicted RBP	27.65	■■■□□ 2.02
IRF3-222	ENST00000599144	NEUROD1	Q13562	356 aa		27.65	■■■□□ 2.02
IRF3-222	ENST00000599144	EVC2	Q86UK5	1308 aa		27.65	■■■□□ 2.02
IRF3-222	ENST00000599144	DDB1	Q16531	1140 aa		27.64	■■■□□ 2.02
IRF3-222	ENST00000599144	PARP4	Q9UKK3	1724 aa	Known RBP	27.64	■■■□□ 2.01
IRF3-222	ENST00000599144	PIK3C2A	O00443	1686 aa		27.63	■■■□□ 2.01
IRF3-222	ENST00000599144	OVOS2	A0A0G2JMS6	1433 aa		27.63	■■■□□ 2.01
IRF3-222	ENST00000599144	OVOS2	A0A0J9YW53	1432 aa		27.63	■■■□□ 2.01
IRF3-222	ENST00000599144	OVOS2	Q6IE36	1432 aa		27.63	■■■□□ 2.01
IRF3-222	ENST00000599144	TTC21B	Q7Z4L5	1316 aa		27.63	■■■□□ 2.01
IRF3-222	ENST00000599144	LRRC37A3	O60309	1634 aa		27.61	■■■□□ 2.01
IRF3-222	ENST00000599144	ANO8	Q9HCE9	1232 aa	Predicted RBP	27.61	■■■□□ 2.01
IRF3-222	ENST00000599144	MARCH10	Q8NA82	808 aa	Predicted RBP	27.6	■■■□□ 2.01
IRF3-222	ENST00000599144	WDR17	Q8IZU2	1322 aa		27.6	■■■□□ 2.01
IRF3-222	ENST00000599144	CPSF1	Q10570	1443 aa	Known RBP	27.59	■■■□□ 2.01
IRF3-222	ENST00000599144	PEAK1	Q9H792	1746 aa		27.59	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms