RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 TMC1Q8TDI8 760 aa27.49■■□□□ 1.99
SHKBP1-214ENST00000597396 CDCA8Q53HL2 280 aa27.48■■□□□ 1.99
SHKBP1-214ENST00000597396 ARHGEF10O15013 1369 aa27.48■■□□□ 1.99
SHKBP1-214ENST00000597396 MON2Q7Z3U7 1717 aa27.45■■□□□ 1.99
SHKBP1-214ENST00000597396 USP6P35125 1406 aa27.44■■□□□ 1.98
SHKBP1-214ENST00000597396 ZNF692Q9BU19 519 aaPredicted RBP27.43■■□□□ 1.98
SHKBP1-214ENST00000597396 ABCA3Q99758 1704 aa27.43■■□□□ 1.98
SHKBP1-214ENST00000597396 MARF1Q9Y4F3 1742 aaKnown RBP27.43■■□□□ 1.98
SHKBP1-214ENST00000597396 PLEKHG5O94827 1062 aa27.42■■□□□ 1.98
SHKBP1-214ENST00000597396 SLC12A5Q9H2X9 1139 aa27.42■■□□□ 1.98
SHKBP1-214ENST00000597396 BRD4O60885 1362 aaPredicted RBP27.42■■□□□ 1.98
SHKBP1-214ENST00000597396 NINLQ9Y2I6 1382 aa27.42■■□□□ 1.98
SHKBP1-214ENST00000597396 AFF2P51816 1311 aa27.41■■□□□ 1.98
SHKBP1-214ENST00000597396 KTN1Q86UP2 1357 aaKnown RBP27.4■■□□□ 1.98
SHKBP1-214ENST00000597396 HDGFL2Q7Z4V5 671 aaPredicted RBP27.4■■□□□ 1.98
SHKBP1-214ENST00000597396 CPSF1Q10570 1443 aaKnown RBP27.4■■□□□ 1.98
SHKBP1-214ENST00000597396 RXRBP28702 533 aa27.39■■□□□ 1.98
SHKBP1-214ENST00000597396 HAP1P54257 671 aaPredicted RBP27.39■■□□□ 1.98
SHKBP1-214ENST00000597396 NRKQ7Z2Y5 1582 aa27.39■■□□□ 1.97
SHKBP1-214ENST00000597396 TERF2IPQ9NYB0 399 aa27.38■■□□□ 1.97
SHKBP1-214ENST00000597396 CD163L1Q9NR16 1453 aa27.38■■□□□ 1.97
SHKBP1-214ENST00000597396 MYOM1P52179 1685 aa27.37■■□□□ 1.97
SHKBP1-214ENST00000597396 ADAMTS2O95450 1211 aa27.37■■□□□ 1.97
SHKBP1-214ENST00000597396 C8orf37Q96NL8 207 aa27.37■■□□□ 1.97
SHKBP1-214ENST00000597396 POLR3GLQ9BT43 218 aa27.37■■□□□ 1.97
SHKBP1-214ENST00000597396 CRYBG1Q9Y4K1 1723 aa27.37■■□□□ 1.97
SHKBP1-214ENST00000597396 ABTB2Q8N961 1025 aa27.36■■□□□ 1.97
SHKBP1-214ENST00000597396 CABLES1Q8TDN4 633 aa27.36■■□□□ 1.97
SHKBP1-214ENST00000597396 NUTM2GQ5VZR2 741 aa27.34■■□□□ 1.97
SHKBP1-214ENST00000597396 A0A1W2PP64 1363 aa27.34■■□□□ 1.97
SHKBP1-214ENST00000597396 PHRF1Q9P1Y6 1649 aaKnown RBP27.34■■□□□ 1.97
SHKBP1-214ENST00000597396 PIK3C2AO00443 1686 aa27.33■■□□□ 1.97
SHKBP1-214ENST00000597396 SSH2Q76I76 1423 aa27.33■■□□□ 1.97
SHKBP1-214ENST00000597396 TTC21BQ7Z4L5 1316 aa27.33■■□□□ 1.97
SHKBP1-214ENST00000597396 TTC21AQ8NDW8 1320 aa27.31■■□□□ 1.96
SHKBP1-214ENST00000597396 ANKRD36BQ8N2N9 1353 aa27.3■■□□□ 1.96
SHKBP1-214ENST00000597396 EDC4Q6P2E9 1401 aaKnown RBP27.3■■□□□ 1.96
SHKBP1-214ENST00000597396 NLRP13Q86W25 1043 aa27.29■■□□□ 1.96
SHKBP1-214ENST00000597396 NGLY1Q96IV0 654 aa27.29■■□□□ 1.96
SHKBP1-214ENST00000597396 ZEB1P37275 1124 aaPredicted RBP27.28■■□□□ 1.96
SHKBP1-214ENST00000597396 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.28■■□□□ 1.96
SHKBP1-214ENST00000597396 QTRT2Q9H974 415 aaKnown RBP27.28■■□□□ 1.96
SHKBP1-214ENST00000597396 CDK12Q9NYV4 1490 aaPredicted RBP27.27■■□□□ 1.96
SHKBP1-214ENST00000597396 NLRP6P59044 892 aa27.27■■□□□ 1.96
SHKBP1-214ENST00000597396 UPF1Q92900 1129 aaKnown RBP eCLIP27.25■■□□□ 1.95
SHKBP1-214ENST00000597396 C11orf95C9JLR9 678 aaPredicted RBP27.24■■□□□ 1.95
SHKBP1-214ENST00000597396 USP19O94966 1318 aa27.23■■□□□ 1.95
SHKBP1-214ENST00000597396 RBM6P78332 1123 aaKnown RBP27.23■■□□□ 1.95
SHKBP1-214ENST00000597396 PLCH1Q4KWH8 1693 aa27.23■■□□□ 1.95
SHKBP1-214ENST00000597396 USP54Q70EL1 1684 aa27.22■■□□□ 1.95
SHKBP1-214ENST00000597396 KIF20BQ96Q89 1820 aa27.21■■□□□ 1.95
SHKBP1-214ENST00000597396 COL14A1Q05707 1796 aaKnown RBP27.2■■□□□ 1.95
SHKBP1-214ENST00000597396 NME9Q86XW9 330 aa27.2■■□□□ 1.94
SHKBP1-214ENST00000597396 SLIT3O75094 1523 aa27.2■■□□□ 1.94
SHKBP1-214ENST00000597396 KIF7Q2M1P5 1343 aa27.19■■□□□ 1.94
SHKBP1-214ENST00000597396 NWD2Q9ULI1 1742 aa27.19■■□□□ 1.94
SHKBP1-214ENST00000597396 USP21Q9UK80 565 aa27.19■■□□□ 1.94
SHKBP1-214ENST00000597396 RGS12O14924 1447 aa27.18■■□□□ 1.94
SHKBP1-214ENST00000597396 ZC3H6P61129 1189 aaKnown RBP27.17■■□□□ 1.94
SHKBP1-214ENST00000597396 PRDM11Q9NQV5 511 aa27.17■■□□□ 1.94
SHKBP1-214ENST00000597396 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.16■■□□□ 1.94
SHKBP1-214ENST00000597396 GCP02774 474 aa27.16■■□□□ 1.94
SHKBP1-214ENST00000597396 FNBP4Q8N3X1 1017 aaPredicted RBP27.16■■□□□ 1.94
SHKBP1-214ENST00000597396 ZRANB1Q9UGI0 708 aa27.16■■□□□ 1.94
SHKBP1-214ENST00000597396 USP31Q70CQ4 1352 aa27.16■■□□□ 1.94
SHKBP1-214ENST00000597396 NSD3Q9BZ95 1437 aa27.16■■□□□ 1.94
SHKBP1-214ENST00000597396 KIAA0232Q92628 1395 aa27.15■■□□□ 1.94
SHKBP1-214ENST00000597396 SLIT2O94813 1529 aa27.15■■□□□ 1.94
SHKBP1-214ENST00000597396 FAM83GA6ND36 823 aa27.14■■□□□ 1.94
SHKBP1-214ENST00000597396 KCNH5Q8NCM2 988 aa27.13■■□□□ 1.93
SHKBP1-214ENST00000597396 TRPC5Q9UL62 973 aaPredicted RBP27.13■■□□□ 1.93
SHKBP1-214ENST00000597396 CCDC7Q96M83 1385 aa27.12■■□□□ 1.93
SHKBP1-214ENST00000597396 SOX12O15370 315 aa27.12■■□□□ 1.93
SHKBP1-214ENST00000597396 CARD14Q9BXL6 1004 aa27.12■■□□□ 1.93
SHKBP1-214ENST00000597396 NRAPQ86VF7 1730 aa27.11■■□□□ 1.93
SHKBP1-214ENST00000597396 OVOS2A0A0J9YW53 1432 aa27.11■■□□□ 1.93
SHKBP1-214ENST00000597396 OVOS2Q6IE36 1432 aa27.11■■□□□ 1.93
SHKBP1-214ENST00000597396 ZBTB7CA1YPR0 619 aa27.11■■□□□ 1.93
SHKBP1-214ENST00000597396 CPDO75976 1380 aa27.1■■□□□ 1.93
SHKBP1-214ENST00000597396 CHRNA2Q15822 529 aa27.1■■□□□ 1.93
SHKBP1-214ENST00000597396 COG3Q96JB2 828 aa27.1■■□□□ 1.93
SHKBP1-214ENST00000597396 PANK3Q9H999 370 aa27.1■■□□□ 1.93
SHKBP1-214ENST00000597396 BCL9LQ86UU0 1499 aa27.1■■□□□ 1.93
SHKBP1-214ENST00000597396 LTN1O94822 1766 aa27.09■■□□□ 1.93
SHKBP1-214ENST00000597396 NFAT5O94916 1531 aa27.09■■□□□ 1.93
SHKBP1-214ENST00000597396 UNC5CLQ8IV45 518 aa27.08■■□□□ 1.93
SHKBP1-214ENST00000597396 BTG4Q9NY30 223 aa27.08■■□□□ 1.93
SHKBP1-214ENST00000597396 WASHC2AQ641Q2 1341 aa27.08■■□□□ 1.93
SHKBP1-214ENST00000597396 FYB1O15117 783 aa27.07■■□□□ 1.92
SHKBP1-214ENST00000597396 GGNBP2Q9H3C7 697 aa27.07■■□□□ 1.92
SHKBP1-214ENST00000597396 LMO7Q8WWI1 1683 aa27.06■■□□□ 1.92
SHKBP1-214ENST00000597396 CGNL1Q0VF96 1302 aa27.06■■□□□ 1.92
SHKBP1-214ENST00000597396 ATRNO75882 1429 aa27.06■■□□□ 1.92
SHKBP1-214ENST00000597396 ANKRD26Q9UPS8 1709 aa27.05■■□□□ 1.92
SHKBP1-214ENST00000597396 RGPD5Q99666 1765 aa27.05■■□□□ 1.92
SHKBP1-214ENST00000597396 COL18A1P39060 1754 aa27.04■■□□□ 1.92
SHKBP1-214ENST00000597396 ARHGEF25Q86VW2 580 aa27.01■■□□□ 1.91
SHKBP1-214ENST00000597396 CCDC9Q9Y3X0 531 aaKnown RBP27.01■■□□□ 1.91
SHKBP1-214ENST00000597396 CAMTA1Q9Y6Y1 1673 aa27.01■■□□□ 1.91
SHKBP1-214ENST00000597396 AATKQ6ZMQ8 1374 aa27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms