RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 NUTM2FA1L443 756 aa13.48□□□□□ -0.25
TRIM28-208ENST00000597172 STAC3Q96MF2 364 aa13.48□□□□□ -0.25
TRIM28-208ENST00000597172 FHDC1Q9C0D6 1143 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-208ENST00000597172 NRKQ7Z2Y5 1582 aa13.48□□□□□ -0.25
TRIM28-208ENST00000597172 ADGRF5Q8IZF2 1346 aa13.47□□□□□ -0.25
TRIM28-208ENST00000597172 ZBTB7AO95365 584 aa13.47□□□□□ -0.25
TRIM28-208ENST00000597172 PTGER2P43116 358 aa13.47□□□□□ -0.25
TRIM28-208ENST00000597172 CAPN15O75808 1086 aa13.45□□□□□ -0.26
TRIM28-208ENST00000597172 HSPA6P17066 643 aa13.45□□□□□ -0.26
TRIM28-208ENST00000597172 LMOD2Q6P5Q4 547 aa13.45□□□□□ -0.26
TRIM28-208ENST00000597172 ATF5Q9Y2D1 282 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-208ENST00000597172 NEXMIFQ5QGS0 1516 aa13.44□□□□□ -0.26
TRIM28-208ENST00000597172 VGFO15240 615 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-208ENST00000597172 PSME1Q06323 249 aa13.44□□□□□ -0.26
TRIM28-208ENST00000597172 PDGFDQ9GZP0 370 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-208ENST00000597172 PRAG1Q86YV5 1406 aa13.44□□□□□ -0.26
TRIM28-208ENST00000597172 SLC34A2O95436 690 aa13.43□□□□□ -0.26
TRIM28-208ENST00000597172 GPR162Q16538 588 aa13.43□□□□□ -0.26
TRIM28-208ENST00000597172 TNS3Q68CZ2 1445 aa13.43□□□□□ -0.26
TRIM28-208ENST00000597172 MYOM1P52179 1685 aa13.43□□□□□ -0.26
TRIM28-208ENST00000597172 THSD7AQ9UPZ6 1657 aa13.43□□□□□ -0.26
TRIM28-208ENST00000597172 NRXN1Q9ULB1 1477 aa13.42□□□□□ -0.26
TRIM28-208ENST00000597172 NRAPQ86VF7 1730 aa13.42□□□□□ -0.26
TRIM28-208ENST00000597172 IFT172Q9UG01 1749 aa13.42□□□□□ -0.26
TRIM28-208ENST00000597172 CDC42BPGQ6DT37 1551 aa13.42□□□□□ -0.26
TRIM28-208ENST00000597172 PPLO60437 1756 aa13.42□□□□□ -0.26
TRIM28-208ENST00000597172 PDE3BQ13370 1112 aa13.41□□□□□ -0.26
TRIM28-208ENST00000597172 NBPF1Q3BBV0 1214 aa13.41□□□□□ -0.26
TRIM28-208ENST00000597172 CFAP70Q5T0N1 1121 aa13.4□□□□□ -0.26
TRIM28-208ENST00000597172 C14orf93Q9H972 538 aaKnown RBP13.4□□□□□ -0.26
TRIM28-208ENST00000597172 ANO8Q9HCE9 1232 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-208ENST00000597172 ARHGEF10O15013 1369 aa13.39□□□□□ -0.27
TRIM28-208ENST00000597172 CASZ1Q86V15 1759 aa13.39□□□□□ -0.27
TRIM28-208ENST00000597172 DLC1Q96QB1 1528 aa13.39□□□□□ -0.27
TRIM28-208ENST00000597172 PIK3C2GO75747 1445 aa13.39□□□□□ -0.27
TRIM28-208ENST00000597172 SBNO1A3KN83 1393 aa13.38□□□□□ -0.27
TRIM28-208ENST00000597172 SPATA31A1Q5TZJ5 1347 aa13.38□□□□□ -0.27
TRIM28-208ENST00000597172 PRELPP51888 382 aa13.37□□□□□ -0.27
TRIM28-208ENST00000597172 BCL11BQ9C0K0 894 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-208ENST00000597172 PHF8Q9UPP1 1060 aa13.36□□□□□ -0.27
TRIM28-208ENST00000597172 ABCA3Q99758 1704 aa13.36□□□□□ -0.27
TRIM28-208ENST00000597172 SHANK3Q9BYB0 1731 aa13.36□□□□□ -0.27
TRIM28-208ENST00000597172 KIF1AQ12756 1690 aa13.35□□□□□ -0.27
TRIM28-208ENST00000597172 TRPM1Q7Z4N2 1603 aa13.35□□□□□ -0.27
TRIM28-208ENST00000597172 COL14A1Q05707 1796 aaKnown RBP13.35□□□□□ -0.27
TRIM28-208ENST00000597172 GOLGB1Q14789 3259 aaKnown RBP13.35□□□□□ -0.27
TRIM28-208ENST00000597172 GPRASP1Q5JY77 1395 aa13.34□□□□□ -0.27
TRIM28-208ENST00000597172 PLSCR1O15162 318 aa13.34□□□□□ -0.27
TRIM28-208ENST00000597172 COL13A1Q5TAT6 717 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-208ENST00000597172 TMEM132EQ6IEE7 984 aa13.34□□□□□ -0.27
TRIM28-208ENST00000597172 WAPLQ7Z5K2 1190 aa13.34□□□□□ -0.27
TRIM28-208ENST00000597172 ARXQ96QS3 562 aa13.34□□□□□ -0.27
TRIM28-208ENST00000597172 SGIP1Q9BQI5 828 aa13.34□□□□□ -0.27
TRIM28-208ENST00000597172 MTFR1LQ9H019 292 aa13.34□□□□□ -0.27
TRIM28-208ENST00000597172 ROCK2O75116 1388 aaKnown RBP13.33□□□□□ -0.27
TRIM28-208ENST00000597172 CARD11Q9BXL7 1154 aa13.33□□□□□ -0.28
TRIM28-208ENST00000597172 MAP3K5Q99683 1374 aa13.32□□□□□ -0.28
TRIM28-208ENST00000597172 PELP1Q8IZL8 1130 aaKnown RBP13.32□□□□□ -0.28
TRIM28-208ENST00000597172 PRDM11Q9NQV5 511 aa13.32□□□□□ -0.28
TRIM28-208ENST00000597172 BARGINQ6ZT62 677 aa13.31□□□□□ -0.28
TRIM28-208ENST00000597172 TNS4Q8IZW8 715 aa13.31□□□□□ -0.28
TRIM28-208ENST00000597172 GPBP1L1Q9HC44 474 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-208ENST00000597172 STRN4Q9NRL3 753 aa13.31□□□□□ -0.28
TRIM28-208ENST00000597172 STK32BQ9NY57 414 aa13.31□□□□□ -0.28
TRIM28-208ENST00000597172 PCDH10Q9P2E7 1040 aa13.31□□□□□ -0.28
TRIM28-208ENST00000597172 USP35Q9P2H5 1018 aa13.31□□□□□ -0.28
TRIM28-208ENST00000597172 KIAA1210Q9ULL0 1709 aa13.3□□□□□ -0.28
TRIM28-208ENST00000597172 ADGRB1O14514 1584 aa13.3□□□□□ -0.28
TRIM28-208ENST00000597172 C11orf95C9JLR9 678 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-208ENST00000597172 HSPA5P11021 654 aaKnown RBP13.3□□□□□ -0.28
TRIM28-208ENST00000597172 EIF4G2P78344 907 aaKnown RBP eCLIP13.29□□□□□ -0.28
TRIM28-208ENST00000597172 PROM2Q8N271 834 aa13.29□□□□□ -0.28
TRIM28-208ENST00000597172 HIRIP3Q9BW71 556 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-208ENST00000597172 STK26Q9P289 416 aa13.29□□□□□ -0.28
TRIM28-208ENST00000597172 ATP10DQ9P241 1426 aa13.29□□□□□ -0.28
TRIM28-208ENST00000597172 DNAJC5GQ8N7S2 189 aa13.28□□□□□ -0.28
TRIM28-208ENST00000597172 TECPR2O15040 1411 aa13.28□□□□□ -0.28
TRIM28-208ENST00000597172 APLP1P51693 650 aa13.27□□□□□ -0.29
TRIM28-208ENST00000597172 SLC15A2Q16348 729 aa13.27□□□□□ -0.29
TRIM28-208ENST00000597172 USP47Q96K76 1375 aa13.27□□□□□ -0.29
TRIM28-208ENST00000597172 FMN2Q9NZ56 1722 aa13.27□□□□□ -0.29
TRIM28-208ENST00000597172 ST20-MTHFSA0A0A6YYL1 179 aa13.26□□□□□ -0.29
TRIM28-208ENST00000597172 GRIN3BO60391 1043 aa13.26□□□□□ -0.29
TRIM28-208ENST00000597172 TRAK1Q9UPV9 953 aa13.26□□□□□ -0.29
TRIM28-208ENST00000597172 YTHDC2Q9H6S0 1430 aaKnown RBP13.25□□□□□ -0.29
TRIM28-208ENST00000597172 PLEKHH1Q9ULM0 1364 aa13.25□□□□□ -0.29
TRIM28-208ENST00000597172 EVA1CP58658 441 aa13.25□□□□□ -0.29
TRIM28-208ENST00000597172 CHRNA2Q15822 529 aa13.25□□□□□ -0.29
TRIM28-208ENST00000597172 KLHL34Q8N239 644 aa13.25□□□□□ -0.29
TRIM28-208ENST00000597172 RGPD3A6NKT7 1758 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-208ENST00000597172 RGPD8O14715 1765 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-208ENST00000597172 RGPD4Q7Z3J3 1758 aa13.25□□□□□ -0.29
TRIM28-208ENST00000597172 TCP11L2Q8N4U5 519 aa13.24□□□□□ -0.29
TRIM28-208ENST00000597172 PMFBP1Q8TBY8 1022 aa13.24□□□□□ -0.29
TRIM28-208ENST00000597172 ABCC11Q96J66 1382 aa13.23□□□□□ -0.29
TRIM28-208ENST00000597172 ZNF316A6NFI3 1004 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-208ENST00000597172 PTF1AQ7RTS3 328 aa13.23□□□□□ -0.29
TRIM28-208ENST00000597172 ZNF526Q8TF50 670 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-208ENST00000597172 SIRT1Q96EB6 747 aa13.22□□□□□ -0.29
TRIM28-208ENST00000597172 TESK2Q96S53 571 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms