RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 FYB1O15117 783 aa19.89■□□□□ 0.77
VRK3-212ENST00000596814 BRD4O60885 1362 aaPredicted RBP19.89■□□□□ 0.77
VRK3-212ENST00000596814 TTC21AQ8NDW8 1320 aa19.89■□□□□ 0.77
VRK3-212ENST00000596814 MORC1Q86VD1 984 aa19.88■□□□□ 0.77
VRK3-212ENST00000596814 GGNBP2Q9H3C7 697 aa19.88■□□□□ 0.77
VRK3-212ENST00000596814 PIK3C2AO00443 1686 aa19.87■□□□□ 0.77
VRK3-212ENST00000596814 SLAIN2Q9P270 581 aa19.87■□□□□ 0.77
VRK3-212ENST00000596814 NME9Q86XW9 330 aa19.86■□□□□ 0.77
VRK3-212ENST00000596814 TRPM3Q9HCF6 1732 aaPredicted RBP19.86■□□□□ 0.77
VRK3-212ENST00000596814 FOXO3O43524 673 aa19.85■□□□□ 0.77
VRK3-212ENST00000596814 PSME1Q06323 249 aa19.85■□□□□ 0.77
VRK3-212ENST00000596814 BRINP3Q76B58 766 aa19.84■□□□□ 0.77
VRK3-212ENST00000596814 NLRP13Q86W25 1043 aa19.84■□□□□ 0.77
VRK3-212ENST00000596814 USP54Q70EL1 1684 aa19.84■□□□□ 0.77
VRK3-212ENST00000596814 OVOS2A0A0J9YW53 1432 aa19.83■□□□□ 0.77
VRK3-212ENST00000596814 OVOS2Q6IE36 1432 aa19.83■□□□□ 0.77
VRK3-212ENST00000596814 PPP2R1AP30153 589 aa19.83■□□□□ 0.77
VRK3-212ENST00000596814 NPHP3Q7Z494 1330 aa19.83■□□□□ 0.76
VRK3-212ENST00000596814 PAK3O75914 559 aaPredicted RBP19.82■□□□□ 0.76
VRK3-212ENST00000596814 COG3Q96JB2 828 aa19.82■□□□□ 0.76
VRK3-212ENST00000596814 IQSEC2Q5JU85 1478 aa19.81■□□□□ 0.76
VRK3-212ENST00000596814 MRS2Q9HD23 443 aa19.81■□□□□ 0.76
VRK3-212ENST00000596814 ZRANB1Q9UGI0 708 aa19.81■□□□□ 0.76
VRK3-212ENST00000596814 NHSL1Q5SYE7 1610 aa19.8■□□□□ 0.76
VRK3-212ENST00000596814 TNNT2P45379 298 aaPredicted RBP19.8■□□□□ 0.76
VRK3-212ENST00000596814 XPCQ01831 940 aaPredicted RBP19.8■□□□□ 0.76
VRK3-212ENST00000596814 CCDC184Q52MB2 194 aa19.8■□□□□ 0.76
VRK3-212ENST00000596814 KRT28Q7Z3Y7 464 aa19.8■□□□□ 0.76
VRK3-212ENST00000596814 USP31Q70CQ4 1352 aa19.8■□□□□ 0.76
VRK3-212ENST00000596814 PXDNQ92626 1479 aa19.8■□□□□ 0.76
VRK3-212ENST00000596814 MARF1Q9Y4F3 1742 aaKnown RBP19.8■□□□□ 0.76
VRK3-212ENST00000596814 ROBO1Q9Y6N7 1651 aa19.79■□□□□ 0.76
VRK3-212ENST00000596814 ALS2Q96Q42 1657 aa19.79■□□□□ 0.76
VRK3-212ENST00000596814 SCAF1Q9H7N4 1312 aaKnown RBP19.79■□□□□ 0.76
VRK3-212ENST00000596814 ABTB2Q8N961 1025 aa19.78■□□□□ 0.76
VRK3-212ENST00000596814 DDX17Q92841 729 aaKnown RBP19.78■□□□□ 0.76
VRK3-212ENST00000596814 SBNO1A3KN83 1393 aa19.77■□□□□ 0.75
VRK3-212ENST00000596814 MAP2P11137 1827 aaKnown RBP19.75■□□□□ 0.75
VRK3-212ENST00000596814 NLRP6P59044 892 aa19.75■□□□□ 0.75
VRK3-212ENST00000596814 TNS3Q68CZ2 1445 aa19.75■□□□□ 0.75
VRK3-212ENST00000596814 AATKQ6ZMQ8 1374 aa19.75■□□□□ 0.75
VRK3-212ENST00000596814 TOM1O60784 492 aa19.73■□□□□ 0.75
VRK3-212ENST00000596814 NUTM2GQ5VZR2 741 aa19.73■□□□□ 0.75
VRK3-212ENST00000596814 AHDC1Q5TGY3 1603 aaPredicted RBP19.73■□□□□ 0.75
VRK3-212ENST00000596814 SOS2Q07890 1332 aaPredicted RBP19.72■□□□□ 0.75
VRK3-212ENST00000596814 SMG6Q86US8 1419 aaKnown RBP19.71■□□□□ 0.75
VRK3-212ENST00000596814 MTHFSP49914 203 aa19.71■□□□□ 0.75
VRK3-212ENST00000596814 LMOD2Q6P5Q4 547 aa19.71■□□□□ 0.75
VRK3-212ENST00000596814 CERKQ8TCT0 537 aa19.71■□□□□ 0.75
VRK3-212ENST00000596814 SLIT3O75094 1523 aa19.7■□□□□ 0.74
VRK3-212ENST00000596814 ARHGEF10O15013 1369 aa19.7■□□□□ 0.74
VRK3-212ENST00000596814 SPATA31A3Q5VYP0 1347 aa19.69■□□□□ 0.74
VRK3-212ENST00000596814 UBAP1LF5GYI3 381 aa19.69■□□□□ 0.74
VRK3-212ENST00000596814 MED1Q15648 1581 aaPredicted RBP19.69■□□□□ 0.74
VRK3-212ENST00000596814 FBLN1P23142 703 aa19.68■□□□□ 0.74
VRK3-212ENST00000596814 CFAP53Q96M91 514 aa19.68■□□□□ 0.74
VRK3-212ENST00000596814 POLKQ9UBT6 870 aa19.68■□□□□ 0.74
VRK3-212ENST00000596814 CDK12Q9NYV4 1490 aaPredicted RBP19.68■□□□□ 0.74
VRK3-212ENST00000596814 PHRF1Q9P1Y6 1649 aaKnown RBP19.68■□□□□ 0.74
VRK3-212ENST00000596814 NFAT5O94916 1531 aa19.68■□□□□ 0.74
VRK3-212ENST00000596814 SOX12O15370 315 aa19.68■□□□□ 0.74
VRK3-212ENST00000596814 PNISRQ8TF01 805 aaKnown RBP19.68■□□□□ 0.74
VRK3-212ENST00000596814 USP19O94966 1318 aa19.67■□□□□ 0.74
VRK3-212ENST00000596814 SHPRHQ149N8 1683 aa19.67■□□□□ 0.74
VRK3-212ENST00000596814 RRS1Q15050 365 aaKnown RBP19.67■□□□□ 0.74
VRK3-212ENST00000596814 CRYBG1Q9Y4K1 1723 aa19.67■□□□□ 0.74
VRK3-212ENST00000596814 FAM9BQ8IZU0 186 aa19.66■□□□□ 0.74
VRK3-212ENST00000596814 EMILIN1Q9Y6C2 1016 aa19.66■□□□□ 0.74
VRK3-212ENST00000596814 LTN1O94822 1766 aa19.66■□□□□ 0.74
VRK3-212ENST00000596814 COL3A1P02461 1466 aaPredicted RBP19.66■□□□□ 0.74
VRK3-212ENST00000596814 PHLPP1O60346 1717 aa19.66■□□□□ 0.74
VRK3-212ENST00000596814 PEAK1Q9H792 1746 aa19.66■□□□□ 0.74
VRK3-212ENST00000596814 PIP4K2BP78356 416 aa19.65■□□□□ 0.74
VRK3-212ENST00000596814 KCNH5Q8NCM2 988 aa19.65■□□□□ 0.74
VRK3-212ENST00000596814 PNPLA6Q8IY17 1366 aa19.64■□□□□ 0.74
VRK3-212ENST00000596814 PPM1GO15355 546 aaPredicted RBP19.64■□□□□ 0.73
VRK3-212ENST00000596814 MAP3K19Q56UN5 1328 aa19.63■□□□□ 0.73
VRK3-212ENST00000596814 INSRP06213 1382 aa19.63■□□□□ 0.73
VRK3-212ENST00000596814 COL16A1Q07092 1604 aaPredicted RBP19.62■□□□□ 0.73
VRK3-212ENST00000596814 ABCA3Q99758 1704 aa19.62■□□□□ 0.73
VRK3-212ENST00000596814 PLEKHG5O94827 1062 aa19.62■□□□□ 0.73
VRK3-212ENST00000596814 WDR43Q15061 677 aaKnown RBP eCLIP19.62■□□□□ 0.73
VRK3-212ENST00000596814 YTHDC1Q96MU7 727 aaKnown RBP19.62■□□□□ 0.73
VRK3-212ENST00000596814 GCP02774 474 aa19.61■□□□□ 0.73
VRK3-212ENST00000596814 KIF24Q5T7B8 1368 aa19.61■□□□□ 0.73
VRK3-212ENST00000596814 FLT4P35916 1363 aa19.6■□□□□ 0.73
VRK3-212ENST00000596814 RTL1A6NKG5 1358 aa19.59■□□□□ 0.73
VRK3-212ENST00000596814 LRRC59Q96AG4 307 aaKnown RBP19.59■□□□□ 0.73
VRK3-212ENST00000596814 DIAPH1O60610 1272 aaKnown RBP19.58■□□□□ 0.72
VRK3-212ENST00000596814 AMPHP49418 695 aa19.58■□□□□ 0.72
VRK3-212ENST00000596814 COL22A1Q8NFW1 1626 aaPredicted RBP19.57■□□□□ 0.72
VRK3-212ENST00000596814 NUDCQ9Y266 331 aa19.56■□□□□ 0.72
VRK3-212ENST00000596814 CABLES1Q8TDN4 633 aa19.56■□□□□ 0.72
VRK3-212ENST00000596814 BLMP54132 1417 aaPredicted RBP19.56■□□□□ 0.72
VRK3-212ENST00000596814 ADAMTS8Q9UP79 889 aa19.55■□□□□ 0.72
VRK3-212ENST00000596814 HOXC9P31274 260 aa19.54■□□□□ 0.72
VRK3-212ENST00000596814 ARHGEF25Q86VW2 580 aa19.54■□□□□ 0.72
VRK3-212ENST00000596814 ZBTB7CA1YPR0 619 aa19.54■□□□□ 0.72
VRK3-212ENST00000596814 HSP90AB2PQ58FF8 381 aa19.54■□□□□ 0.72
VRK3-212ENST00000596814 U2SURPO15042 1029 aaKnown RBP19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms