RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 PLEKHG5O94827 1062 aa18.81■□□□□ 0.6
LIG1-212ENST00000596549 LMOD2Q6P5Q4 547 aa18.81■□□□□ 0.6
LIG1-212ENST00000596549 PPIP5K1Q6PFW1 1433 aa18.81■□□□□ 0.6
LIG1-212ENST00000596549 TRIM26Q12899 539 aaPredicted RBP18.8■□□□□ 0.6
LIG1-212ENST00000596549 UPF1Q92900 1129 aaKnown RBP eCLIP18.8■□□□□ 0.6
LIG1-212ENST00000596549 NBPF8Q3BBV2 869 aa18.79■□□□□ 0.6
LIG1-212ENST00000596549 NGDNQ8NEJ9 315 aaKnown RBP18.79■□□□□ 0.6
LIG1-212ENST00000596549 PIK3C2AO00443 1686 aa18.79■□□□□ 0.6
LIG1-212ENST00000596549 HAP1P54257 671 aaPredicted RBP18.78■□□□□ 0.6
LIG1-212ENST00000596549 MON2Q7Z3U7 1717 aa18.77■□□□□ 0.6
LIG1-212ENST00000596549 ACEP12821 1306 aa18.77■□□□□ 0.6
LIG1-212ENST00000596549 LMO7Q8WWI1 1683 aa18.77■□□□□ 0.6
LIG1-212ENST00000596549 UNC5CLQ8IV45 518 aa18.77■□□□□ 0.6
LIG1-212ENST00000596549 CCDC61Q9Y6R9 512 aa18.76■□□□□ 0.59
LIG1-212ENST00000596549 GJD4Q96KN9 370 aaPredicted RBP18.75■□□□□ 0.59
LIG1-212ENST00000596549 CABP2Q9NPB3 220 aa18.75■□□□□ 0.59
LIG1-212ENST00000596549 EP400Q96L91 3159 aa18.74■□□□□ 0.59
LIG1-212ENST00000596549 THSD7AQ9UPZ6 1657 aa18.74■□□□□ 0.59
LIG1-212ENST00000596549 TONSLQ96HA7 1378 aa18.74■□□□□ 0.59
LIG1-212ENST00000596549 PLEKHG3A1L390 1219 aa18.74■□□□□ 0.59
LIG1-212ENST00000596549 SRPK2P78362 688 aaKnown RBP18.74■□□□□ 0.59
LIG1-212ENST00000596549 ATAD2Q6PL18 1390 aa18.73■□□□□ 0.59
LIG1-212ENST00000596549 PAK3O75914 559 aaPredicted RBP18.73■□□□□ 0.59
LIG1-212ENST00000596549 USP6P35125 1406 aa18.73■□□□□ 0.59
LIG1-212ENST00000596549 FAM83GA6ND36 823 aa18.72■□□□□ 0.59
LIG1-212ENST00000596549 SLIT3O75094 1523 aa18.71■□□□□ 0.59
LIG1-212ENST00000596549 SBNO2Q9Y2G9 1366 aa18.7■□□□□ 0.58
LIG1-212ENST00000596549 USP54Q70EL1 1684 aa18.7■□□□□ 0.58
LIG1-212ENST00000596549 VPS72Q15906 364 aa18.7■□□□□ 0.58
LIG1-212ENST00000596549 SSH2Q76I76 1423 aa18.7■□□□□ 0.58
LIG1-212ENST00000596549 KIAA0232Q92628 1395 aa18.69■□□□□ 0.58
LIG1-212ENST00000596549 USP19O94966 1318 aa18.69■□□□□ 0.58
LIG1-212ENST00000596549 NUTM2GQ5VZR2 741 aa18.68■□□□□ 0.58
LIG1-212ENST00000596549 EVC2Q86UK5 1308 aa18.68■□□□□ 0.58
LIG1-212ENST00000596549 WNK3Q9BYP7 1800 aa18.67■□□□□ 0.58
LIG1-212ENST00000596549 BTG4Q9NY30 223 aa18.67■□□□□ 0.58
LIG1-212ENST00000596549 COL18A1P39060 1754 aa18.66■□□□□ 0.58
LIG1-212ENST00000596549 CAMTA1Q9Y6Y1 1673 aa18.66■□□□□ 0.58
LIG1-212ENST00000596549 BRD4O60885 1362 aaPredicted RBP18.66■□□□□ 0.58
LIG1-212ENST00000596549 CABP1Q9NZU7 370 aa18.65■□□□□ 0.58
LIG1-212ENST00000596549 RGPD5Q99666 1765 aa18.65■□□□□ 0.58
LIG1-212ENST00000596549 CARD11Q9BXL7 1154 aa18.64■□□□□ 0.57
LIG1-212ENST00000596549 PRDM11Q9NQV5 511 aa18.64■□□□□ 0.57
LIG1-212ENST00000596549 CPSF1Q10570 1443 aaKnown RBP18.64■□□□□ 0.57
LIG1-212ENST00000596549 CD163L1Q9NR16 1453 aa18.64■□□□□ 0.57
LIG1-212ENST00000596549 CPDO75976 1380 aa18.63■□□□□ 0.57
LIG1-212ENST00000596549 TNS1Q9HBL0 1735 aaKnown RBP18.63■□□□□ 0.57
LIG1-212ENST00000596549 CHRNA2Q15822 529 aa18.62■□□□□ 0.57
LIG1-212ENST00000596549 ABTB2Q8N961 1025 aa18.62■□□□□ 0.57
LIG1-212ENST00000596549 CCDC9Q9Y3X0 531 aaKnown RBP18.62■□□□□ 0.57
LIG1-212ENST00000596549 RGPD1P0DJD0 1748 aa18.61■□□□□ 0.57
LIG1-212ENST00000596549 ONECUT3O60422 494 aaPredicted RBP18.61■□□□□ 0.57
LIG1-212ENST00000596549 ZC3H6P61129 1189 aaKnown RBP18.61■□□□□ 0.57
LIG1-212ENST00000596549 SEPT12Q8IYM1 358 aa18.61■□□□□ 0.57
LIG1-212ENST00000596549 NFAT5O94916 1531 aa18.6■□□□□ 0.57
LIG1-212ENST00000596549 SPATA31A5Q5VU36 1347 aa18.6■□□□□ 0.57
LIG1-212ENST00000596549 SPATA31A7Q8IWB4 1347 aa18.6■□□□□ 0.57
LIG1-212ENST00000596549 LTN1O94822 1766 aa18.6■□□□□ 0.57
LIG1-212ENST00000596549 PARP4Q9UKK3 1724 aaKnown RBP18.6■□□□□ 0.57
LIG1-212ENST00000596549 COL5A2P05997 1499 aaPredicted RBP18.59■□□□□ 0.57
LIG1-212ENST00000596549 FAM98CQ17RN3 349 aaKnown RBP18.58■□□□□ 0.56
LIG1-212ENST00000596549 LRRC37A3O60309 1634 aa18.57■□□□□ 0.56
LIG1-212ENST00000596549 BLMP54132 1417 aaPredicted RBP18.57■□□□□ 0.56
LIG1-212ENST00000596549 NLRP13Q86W25 1043 aa18.56■□□□□ 0.56
LIG1-212ENST00000596549 MYOM1P52179 1685 aa18.56■□□□□ 0.56
LIG1-212ENST00000596549 SPATA31A1Q5TZJ5 1347 aa18.55■□□□□ 0.56
LIG1-212ENST00000596549 TTC21BQ7Z4L5 1316 aa18.55■□□□□ 0.56
LIG1-212ENST00000596549 GCP02774 474 aa18.55■□□□□ 0.56
LIG1-212ENST00000596549 KTN1Q86UP2 1357 aaKnown RBP18.55■□□□□ 0.56
LIG1-212ENST00000596549 STRN4Q9NRL3 753 aa18.54■□□□□ 0.56
LIG1-212ENST00000596549 NLRP6P59044 892 aa18.53■□□□□ 0.56
LIG1-212ENST00000596549 KRT27Q7Z3Y8 459 aa18.53■□□□□ 0.56
LIG1-212ENST00000596549 TESK2Q96S53 571 aa18.53■□□□□ 0.56
LIG1-212ENST00000596549 ABCC6O95255 1503 aa18.53■□□□□ 0.56
LIG1-212ENST00000596549 A0A0G2JS52 829 aa18.52■□□□□ 0.56
LIG1-212ENST00000596549 MYT1Q01538 1121 aa18.52■□□□□ 0.56
LIG1-212ENST00000596549 A0A1W2PP64 1363 aa18.52■□□□□ 0.55
LIG1-212ENST00000596549 TTC21AQ8NDW8 1320 aa18.51■□□□□ 0.55
LIG1-212ENST00000596549 ZNF692Q9BU19 519 aaPredicted RBP18.51■□□□□ 0.55
LIG1-212ENST00000596549 PEAK1Q9H792 1746 aa18.51■□□□□ 0.55
LIG1-212ENST00000596549 AATKQ6ZMQ8 1374 aa18.5■□□□□ 0.55
LIG1-212ENST00000596549 USP47Q96K76 1375 aa18.5■□□□□ 0.55
LIG1-212ENST00000596549 EDC4Q6P2E9 1401 aaKnown RBP18.49■□□□□ 0.55
LIG1-212ENST00000596549 ST20-MTHFSA0A0A6YYL1 179 aa18.49■□□□□ 0.55
LIG1-212ENST00000596549 LARP1Q6PKG0 1096 aaKnown RBP18.49■□□□□ 0.55
LIG1-212ENST00000596549 CCDC125Q86Z20 511 aa18.49■□□□□ 0.55
LIG1-212ENST00000596549 KIF20BQ96Q89 1820 aa18.49■□□□□ 0.55
LIG1-212ENST00000596549 OVOS2A0A0J9YW53 1432 aa18.49■□□□□ 0.55
LIG1-212ENST00000596549 CRB1P82279 1406 aa18.49■□□□□ 0.55
LIG1-212ENST00000596549 OVOS2Q6IE36 1432 aa18.49■□□□□ 0.55
LIG1-212ENST00000596549 USP31Q70CQ4 1352 aa18.48■□□□□ 0.55
LIG1-212ENST00000596549 SBF2Q86WG5 1849 aa18.48■□□□□ 0.55
LIG1-212ENST00000596549 RREB1Q92766 1687 aa18.47■□□□□ 0.55
LIG1-212ENST00000596549 CLSPNQ9HAW4 1339 aa18.47■□□□□ 0.55
LIG1-212ENST00000596549 FAM182BQ5T319 152 aa18.46■□□□□ 0.55
LIG1-212ENST00000596549 SLC12A5Q9H2X9 1139 aa18.46■□□□□ 0.55
LIG1-212ENST00000596549 USP35Q9P2H5 1018 aa18.46■□□□□ 0.55
LIG1-212ENST00000596549 ZRANB1Q9UGI0 708 aa18.46■□□□□ 0.55
LIG1-212ENST00000596549 NINLQ9Y2I6 1382 aa18.45■□□□□ 0.54
LIG1-212ENST00000596549 ZBTB7CA1YPR0 619 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms