RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 NISCHQ9Y2I1 1504 aa32.66■■■□□ 2.82
LIG1-212ENST00000596549 CCDC180Q9P1Z9 1646 aa29.31■■■□□ 2.28
LIG1-212ENST00000596549 ABCC9O60706 1549 aa28.84■■■□□ 2.21
LIG1-212ENST00000596549 RB1CC1Q8TDY2 1594 aa27.64■■■□□ 2.01
LIG1-212ENST00000596549 NACADO15069 1562 aa27.51■■□□□ 1.99
LIG1-212ENST00000596549 MYO15BQ96JP2 1530 aa27.24■■□□□ 1.95
LIG1-212ENST00000596549 UNC13AQ9UPW8 1703 aa27.23■■□□□ 1.95
LIG1-212ENST00000596549 ZCCHC6Q5VYS8 1495 aaKnown RBP27.19■■□□□ 1.94
LIG1-212ENST00000596549 DCAF8L2P0C7V8 631 aa27.14■■□□□ 1.94
LIG1-212ENST00000596549 DCAF1Q9Y4B6 1507 aa27.02■■□□□ 1.92
LIG1-212ENST00000596549 BICRAQ9NZM4 1560 aa26.9■■□□□ 1.9
LIG1-212ENST00000596549 PABPN1Q86U42 306 aaKnown RBP eCLIP26.76■■□□□ 1.87
LIG1-212ENST00000596549 DNAJC5BQ9UF47 199 aa26.68■■□□□ 1.86
LIG1-212ENST00000596549 SCRIBQ14160 1630 aa26.67■■□□□ 1.86
LIG1-212ENST00000596549 SHROOM4Q9ULL8 1493 aa26.5■■□□□ 1.83
LIG1-212ENST00000596549 EIF4G1Q04637 1599 aaKnown RBP26.16■■□□□ 1.78
LIG1-212ENST00000596549 CC2D2AQ9P2K1 1620 aa26.14■■□□□ 1.78
LIG1-212ENST00000596549 CECR2Q9BXF3 1484 aa25.91■■□□□ 1.74
LIG1-212ENST00000596549 SMARCA4P51532 1647 aa25.49■■□□□ 1.67
LIG1-212ENST00000596549 BAZ1AQ9NRL2 1556 aaPredicted RBP25.35■■□□□ 1.65
LIG1-212ENST00000596549 NCAPD3P42695 1498 aa25.34■■□□□ 1.65
LIG1-212ENST00000596549 ATAD2BQ9ULI0 1458 aa25.33■■□□□ 1.65
LIG1-212ENST00000596549 SMARCA2P51531 1590 aa25.3■■□□□ 1.64
LIG1-212ENST00000596549 HMGXB3Q12766 1538 aa25.28■■□□□ 1.64
LIG1-212ENST00000596549 PEG3Q9GZU2 1588 aa25.24■■□□□ 1.63
LIG1-212ENST00000596549 MROH2BQ7Z745 1585 aa25.19■■□□□ 1.62
LIG1-212ENST00000596549 BAZ1BQ9UIG0 1483 aaKnown RBP25.1■■□□□ 1.61
LIG1-212ENST00000596549 WIZO95785 1651 aa24.97■■□□□ 1.59
LIG1-212ENST00000596549 NESP48681 1621 aa24.9■■□□□ 1.58
LIG1-212ENST00000596549 ERCC6Q03468 1493 aa24.83■■□□□ 1.56
LIG1-212ENST00000596549 LAMC3Q9Y6N6 1575 aa24.8■■□□□ 1.56
LIG1-212ENST00000596549 KIF21AQ7Z4S6 1674 aa24.73■■□□□ 1.55
LIG1-212ENST00000596549 CUX2O14529 1486 aa24.73■■□□□ 1.55
LIG1-212ENST00000596549 THOC2Q8NI27 1593 aaKnown RBP24.71■■□□□ 1.55
LIG1-212ENST00000596549 RSF1Q96T23 1441 aaPredicted RBP24.71■■□□□ 1.55
LIG1-212ENST00000596549 TOP2AP11388 1531 aaKnown RBP24.64■■□□□ 1.53
LIG1-212ENST00000596549 CADPSQ9ULU8 1353 aa24.53■■□□□ 1.52
LIG1-212ENST00000596549 DNAJC5Q9H3Z4 198 aa24.51■■□□□ 1.51
LIG1-212ENST00000596549 PDS5BQ9NTI5 1447 aa24.5■■□□□ 1.51
LIG1-212ENST00000596549 PRDM2Q13029 1718 aa24.42■■□□□ 1.5
LIG1-212ENST00000596549 CFTRP13569 1480 aa24.38■■□□□ 1.49
LIG1-212ENST00000596549 WDR62O43379 1518 aa24.37■■□□□ 1.49
LIG1-212ENST00000596549 MRC2Q9UBG0 1479 aa24.37■■□□□ 1.49
LIG1-212ENST00000596549 CEP164Q9UPV0 1460 aa24.33■■□□□ 1.49
LIG1-212ENST00000596549 FANCD2Q9BXW9 1451 aa24.32■■□□□ 1.48
LIG1-212ENST00000596549 CCDC88BA6NC98 1476 aa24.26■■□□□ 1.47
LIG1-212ENST00000596549 URB2Q14146 1524 aaKnown RBP24.15■■□□□ 1.46
LIG1-212ENST00000596549 TOPBP1Q92547 1522 aa23.93■■□□□ 1.42
LIG1-212ENST00000596549 DNMBPQ6XZF7 1577 aa23.91■■□□□ 1.42
LIG1-212ENST00000596549 ABCC8Q09428 1581 aa23.82■■□□□ 1.4
LIG1-212ENST00000596549 IFT140Q96RY7 1462 aa23.81■■□□□ 1.4
LIG1-212ENST00000596549 ZNF608Q9ULD9 1512 aaPredicted RBP23.78■■□□□ 1.4
LIG1-212ENST00000596549 EIF4G3O43432 1585 aaKnown RBP23.78■■□□□ 1.4
LIG1-212ENST00000596549 TARBP1Q13395 1621 aaKnown RBP23.77■■□□□ 1.4
LIG1-212ENST00000596549 POLA1P09884 1462 aaPredicted RBP23.71■■□□□ 1.39
LIG1-212ENST00000596549 SUPT5HO00267 1087 aaKnown RBP23.69■■□□□ 1.38
LIG1-212ENST00000596549 CUX1P39880 1505 aa23.66■■□□□ 1.38
LIG1-212ENST00000596549 WDR97A6NE52 1622 aa23.61■■□□□ 1.37
LIG1-212ENST00000596549 FGD5Q6ZNL6 1462 aa23.61■■□□□ 1.37
LIG1-212ENST00000596549 CHD1O14646 1710 aa23.58■■□□□ 1.37
LIG1-212ENST00000596549 RAD54L2Q9Y4B4 1467 aa23.57■■□□□ 1.36
LIG1-212ENST00000596549 AQRO60306 1485 aaKnown RBP eCLIP23.53■■□□□ 1.369e-7■■■■■ 31.6
LIG1-212ENST00000596549 SOGA1O94964 1423 aa23.49■■□□□ 1.35
LIG1-212ENST00000596549 OSCARQ8IYS5 282 aa23.46■■□□□ 1.35
LIG1-212ENST00000596549 PBRM1Q86U86 1689 aa23.45■■□□□ 1.34
LIG1-212ENST00000596549 BIVM-ERCC5R4GMW8 1640 aa23.45■■□□□ 1.34
LIG1-212ENST00000596549 RIMBP3CA6NJZ7 1639 aa23.41■■□□□ 1.34
LIG1-212ENST00000596549 RIMBP3BA6NNM3 1639 aa23.41■■□□□ 1.34
LIG1-212ENST00000596549 RIMBP3Q9UFD9 1639 aa23.41■■□□□ 1.34
LIG1-212ENST00000596549 TDRD9Q8NDG6 1382 aaKnown RBP23.4■■□□□ 1.34
LIG1-212ENST00000596549 ABCA5Q8WWZ7 1642 aa23.4■■□□□ 1.34
LIG1-212ENST00000596549 SYNJ1O43426 1573 aa23.4■■□□□ 1.34
LIG1-212ENST00000596549 TOP2BQ02880 1626 aa23.38■■□□□ 1.33
LIG1-212ENST00000596549 SNAPC4Q5SXM2 1469 aa23.37■■□□□ 1.33
LIG1-212ENST00000596549 ABCA10Q8WWZ4 1543 aa23.34■■□□□ 1.33
LIG1-212ENST00000596549 ARHGEF11O15085 1522 aa23.31■■□□□ 1.32
LIG1-212ENST00000596549 GRIN2BQ13224 1484 aa23.3■■□□□ 1.32
LIG1-212ENST00000596549 MAGI1Q96QZ7 1491 aaPredicted RBP23.3■■□□□ 1.32
LIG1-212ENST00000596549 WRNQ14191 1432 aaPredicted RBP eCLIP23.29■■□□□ 1.32
LIG1-212ENST00000596549 GAPVD1Q14C86 1478 aa23.26■■□□□ 1.31
LIG1-212ENST00000596549 TRIM41Q8WV44 630 aa23.26■■□□□ 1.31
LIG1-212ENST00000596549 CLASP1Q7Z460 1538 aa23.24■■□□□ 1.31
LIG1-212ENST00000596549 SYNJ2O15056 1496 aa23.21■■□□□ 1.31
LIG1-212ENST00000596549 ADAMTS12P58397 1594 aa23.18■■□□□ 1.3
LIG1-212ENST00000596549 FBLN2P98095 1184 aa23.17■■□□□ 1.3
LIG1-212ENST00000596549 ARAP1Q96P48 1450 aa23.11■■□□□ 1.29
LIG1-212ENST00000596549 ERICH3Q5RHP9 1530 aa23.07■■□□□ 1.28
LIG1-212ENST00000596549 CHMP7Q8WUX9 453 aaPredicted RBP23.06■■□□□ 1.28
LIG1-212ENST00000596549 GRIN2AQ12879 1464 aa23.05■■□□□ 1.28
LIG1-212ENST00000596549 CEP170Q5SW79 1584 aa23.04■■□□□ 1.28
LIG1-212ENST00000596549 FHAD1B1AJZ9 1412 aa22.97■■□□□ 1.27
LIG1-212ENST00000596549 NUP160Q12769 1436 aa22.96■■□□□ 1.27
LIG1-212ENST00000596549 SHROOM2Q13796 1616 aa22.93■■□□□ 1.26
LIG1-212ENST00000596549 ERCC6L2Q5T890 1561 aa22.9■■□□□ 1.26
LIG1-212ENST00000596549 CYB5RLQ6IPT4 315 aa22.9■■□□□ 1.26
LIG1-212ENST00000596549 RUSC2Q8N2Y8 1516 aa22.87■■□□□ 1.25
LIG1-212ENST00000596549 CUL7Q14999 1698 aa22.86■■□□□ 1.25
LIG1-212ENST00000596549 KIF27Q86VH2 1401 aa22.79■■□□□ 1.24
LIG1-212ENST00000596549 IGF1RP08069 1367 aa22.72■■□□□ 1.23
LIG1-212ENST00000596549 PRG4Q92954 1404 aaPredicted RBP22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms