RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 LRRC7Q96NW7 1537 aa27.98■■■□□ 2.07
PNKP-203ENST00000593946 TTC21BQ7Z4L5 1316 aa27.97■■■□□ 2.07
PNKP-203ENST00000593946 NME9Q86XW9 330 aa27.96■■■□□ 2.07
PNKP-203ENST00000593946 PHF8Q9UPP1 1060 aa27.95■■■□□ 2.07
PNKP-203ENST00000593946 KIF1AQ12756 1690 aa27.94■■■□□ 2.06
PNKP-203ENST00000593946 MAP2P11137 1827 aaKnown RBP27.94■■■□□ 2.06
PNKP-203ENST00000593946 C1orf167Q5SNV9 1468 aa27.93■■■□□ 2.06
PNKP-203ENST00000593946 TTC21AQ8NDW8 1320 aa27.92■■■□□ 2.06
PNKP-203ENST00000593946 SCAF1Q9H7N4 1312 aaKnown RBP27.92■■■□□ 2.06
PNKP-203ENST00000593946 PIK3C2AO00443 1686 aa27.92■■■□□ 2.06
PNKP-203ENST00000593946 SHPRHQ149N8 1683 aa27.92■■■□□ 2.06
PNKP-203ENST00000593946 HNRNPUQ00839 825 aaKnown RBP eCLIP27.92■■■□□ 2.06
PNKP-203ENST00000593946 INSRP06213 1382 aa27.92■■■□□ 2.06
PNKP-203ENST00000593946 MST1RQ04912 1400 aa27.91■■■□□ 2.06
PNKP-203ENST00000593946 ESCO1Q5FWF5 840 aa27.91■■■□□ 2.06
PNKP-203ENST00000593946 MSH6P52701 1360 aa27.91■■■□□ 2.06
PNKP-203ENST00000593946 MTHFSP49914 203 aa27.9■■■□□ 2.06
PNKP-203ENST00000593946 OVOS2A0A0J9YW53 1432 aa27.9■■■□□ 2.06
PNKP-203ENST00000593946 OVOS2Q6IE36 1432 aa27.9■■■□□ 2.06
PNKP-203ENST00000593946 USP54Q70EL1 1684 aa27.9■■■□□ 2.06
PNKP-203ENST00000593946 ATF3P18847 181 aa27.89■■■□□ 2.06
PNKP-203ENST00000593946 ZRANB1Q9UGI0 708 aa27.89■■■□□ 2.06
PNKP-203ENST00000593946 COG3Q96JB2 828 aa27.89■■■□□ 2.05
PNKP-203ENST00000593946 CADPS2Q86UW7 1296 aa27.87■■■□□ 2.05
PNKP-203ENST00000593946 ORAI2Q96SN7 254 aa27.87■■■□□ 2.05
PNKP-203ENST00000593946 MARF1Q9Y4F3 1742 aaKnown RBP27.86■■■□□ 2.05
PNKP-203ENST00000593946 BLMP54132 1417 aaPredicted RBP27.86■■■□□ 2.05
PNKP-203ENST00000593946 AATKQ6ZMQ8 1374 aa27.85■■■□□ 2.05
PNKP-203ENST00000593946 USP31Q70CQ4 1352 aa27.84■■■□□ 2.05
PNKP-203ENST00000593946 COL3A1P02461 1466 aaPredicted RBP27.83■■■□□ 2.05
PNKP-203ENST00000593946 SMG6Q86US8 1419 aaKnown RBP27.83■■■□□ 2.05
PNKP-203ENST00000593946 WDR43Q15061 677 aaKnown RBP eCLIP27.83■■■□□ 2.05
PNKP-203ENST00000593946 CFAP53Q96M91 514 aa27.83■■■□□ 2.05
PNKP-203ENST00000593946 TRPM3Q9HCF6 1732 aaPredicted RBP27.82■■■□□ 2.04
PNKP-203ENST00000593946 ADAMTS8Q9UP79 889 aa27.81■■■□□ 2.04
PNKP-203ENST00000593946 PNPLA6Q8IY17 1366 aa27.8■■■□□ 2.04
PNKP-203ENST00000593946 POLKQ9UBT6 870 aa27.79■■■□□ 2.04
PNKP-203ENST00000593946 ZBED9Q6R2W3 1325 aa27.79■■■□□ 2.04
PNKP-203ENST00000593946 PSME1Q06323 249 aa27.78■■■□□ 2.04
PNKP-203ENST00000593946 FBLN1P23142 703 aa27.77■■■□□ 2.04
PNKP-203ENST00000593946 CDK12Q9NYV4 1490 aaPredicted RBP27.77■■■□□ 2.04
PNKP-203ENST00000593946 FOXO3O43524 673 aa27.76■■■□□ 2.03
PNKP-203ENST00000593946 LTBP4Q8N2S1 1624 aa27.74■■■□□ 2.03
PNKP-203ENST00000593946 PAK3O75914 559 aaPredicted RBP27.73■■■□□ 2.03
PNKP-203ENST00000593946 ABTB2Q8N961 1025 aa27.72■■■□□ 2.03
PNKP-203ENST00000593946 EMILIN1Q9Y6C2 1016 aa27.72■■■□□ 2.03
PNKP-203ENST00000593946 NLRP6P59044 892 aa27.72■■■□□ 2.03
PNKP-203ENST00000593946 ALS2Q96Q42 1657 aa27.71■■■□□ 2.03
PNKP-203ENST00000593946 PEAK1Q9H792 1746 aa27.7■■■□□ 2.03
PNKP-203ENST00000593946 RRS1Q15050 365 aaKnown RBP27.7■■■□□ 2.02
PNKP-203ENST00000593946 KRT28Q7Z3Y7 464 aa27.68■■■□□ 2.02
PNKP-203ENST00000593946 PPM1GO15355 546 aaPredicted RBP27.67■■■□□ 2.02
PNKP-203ENST00000593946 XPCQ01831 940 aaPredicted RBP27.67■■■□□ 2.02
PNKP-203ENST00000593946 NUTM2GQ5VZR2 741 aa27.67■■■□□ 2.02
PNKP-203ENST00000593946 SLAIN2Q9P270 581 aa27.67■■■□□ 2.02
PNKP-203ENST00000593946 NPHP3Q7Z494 1330 aa27.66■■■□□ 2.02
PNKP-203ENST00000593946 DIAPH1O60610 1272 aaKnown RBP27.66■■■□□ 2.02
PNKP-203ENST00000593946 PXDNQ92626 1479 aa27.65■■■□□ 2.02
PNKP-203ENST00000593946 BRINP3Q76B58 766 aa27.65■■■□□ 2.02
PNKP-203ENST00000593946 NUDCQ9Y266 331 aa27.65■■■□□ 2.02
PNKP-203ENST00000593946 LTN1O94822 1766 aa27.64■■■□□ 2.02
PNKP-203ENST00000593946 NFAT5O94916 1531 aa27.64■■■□□ 2.01
PNKP-203ENST00000593946 SLIT3O75094 1523 aa27.62■■■□□ 2.01
PNKP-203ENST00000593946 SENP3-EIF4A1A0A087X0R7 540 aa27.62■■■□□ 2.01
PNKP-203ENST00000593946 SBNO1A3KN83 1393 aa27.62■■■□□ 2.01
PNKP-203ENST00000593946 CCDC146Q8IYE0 955 aa27.61■■■□□ 2.01
PNKP-203ENST00000593946 MAP3K19Q56UN5 1328 aa27.61■■■□□ 2.01
PNKP-203ENST00000593946 SOX12O15370 315 aa27.61■■■□□ 2.01
PNKP-203ENST00000593946 U2AF1L5P0DN76 240 aaPredicted RBP27.61■■■□□ 2.01
PNKP-203ENST00000593946 U2AF1Q01081 240 aaKnown RBP eCLIP27.61■■■□□ 2.019e-9■■■■■ 30
PNKP-203ENST00000593946 DDX17Q92841 729 aaKnown RBP27.61■■■□□ 2.01
PNKP-203ENST00000593946 NHSL1Q5SYE7 1610 aa27.59■■■□□ 2.01
PNKP-203ENST00000593946 PHRF1Q9P1Y6 1649 aaKnown RBP27.59■■■□□ 2.01
PNKP-203ENST00000593946 KIF24Q5T7B8 1368 aa27.59■■■□□ 2.01
PNKP-203ENST00000593946 U2SURPO15042 1029 aaKnown RBP27.58■■■□□ 2.01
PNKP-203ENST00000593946 FLT4P35916 1363 aa27.58■■■□□ 2.01
PNKP-203ENST00000593946 IL13P35225 146 aa27.58■■■□□ 2.01
PNKP-203ENST00000593946 IQSEC2Q5JU85 1478 aa27.58■■■□□ 2
PNKP-203ENST00000593946 USP19O94966 1318 aa27.57■■■□□ 2
PNKP-203ENST00000593946 TNS3Q68CZ2 1445 aa27.57■■■□□ 2
PNKP-203ENST00000593946 RUNDC1Q96C34 613 aa27.56■■■□□ 2
PNKP-203ENST00000593946 RGPD1P0DJD0 1748 aa27.56■■■□□ 2
PNKP-203ENST00000593946 KCNH5Q8NCM2 988 aa27.55■■■□□ 2
PNKP-203ENST00000593946 CRYBG1Q9Y4K1 1723 aa27.55■■■□□ 2
PNKP-203ENST00000593946 APAF1O14727 1248 aa27.54■■■□□ 2
PNKP-203ENST00000593946 MED1Q15648 1581 aaPredicted RBP27.54■■■□□ 2
PNKP-203ENST00000593946 LMOD2Q6P5Q4 547 aa27.53■■■□□ 2
PNKP-203ENST00000593946 SALL2Q9Y467 1007 aaPredicted RBP27.53■■■□□ 2
PNKP-203ENST00000593946 HSP90AB2PQ58FF8 381 aa27.53■■■□□ 2
PNKP-203ENST00000593946 RTL1A6NKG5 1358 aa27.52■■■□□ 2
PNKP-203ENST00000593946 SOS2Q07890 1332 aaPredicted RBP27.52■■■□□ 2
PNKP-203ENST00000593946 EIF4A2Q14240 407 aaKnown RBP27.52■■■□□ 2
PNKP-203ENST00000593946 SPATA31A3Q5VYP0 1347 aa27.52■■■□□ 2
PNKP-203ENST00000593946 AEBP2Q6ZN18 517 aaPredicted RBP27.52■■■□□ 2
PNKP-203ENST00000593946 AMPHP49418 695 aa27.51■■□□□ 1.99
PNKP-203ENST00000593946 NGEFQ8N5V2 710 aa27.51■■□□□ 1.99
PNKP-203ENST00000593946 PLEKHF1Q96S99 279 aa27.5■■□□□ 1.99
PNKP-203ENST00000593946 FCHSD2O94868 740 aa27.5■■□□□ 1.99
PNKP-203ENST00000593946 GCP02774 474 aa27.5■■□□□ 1.99
PNKP-203ENST00000593946 ROBO1Q9Y6N7 1651 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms