RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 SLIT2O94813 1529 aa21.75■■□□□ 1.07
TRIM28-203ENST00000593582 PPIP5K1Q6PFW1 1433 aa21.74■■□□□ 1.07
TRIM28-203ENST00000593582 CARD11Q9BXL7 1154 aa21.74■■□□□ 1.07
TRIM28-203ENST00000593582 ALS2Q96Q42 1657 aa21.74■■□□□ 1.07
TRIM28-203ENST00000593582 GJD4Q96KN9 370 aaPredicted RBP21.72■■□□□ 1.07
TRIM28-203ENST00000593582 ABCA3Q99758 1704 aa21.71■■□□□ 1.07
TRIM28-203ENST00000593582 FAM83GA6ND36 823 aa21.7■■□□□ 1.06
TRIM28-203ENST00000593582 CABP1Q9NZU7 370 aa21.7■■□□□ 1.06
TRIM28-203ENST00000593582 RALGAPBQ86X10 1494 aa21.7■■□□□ 1.06
TRIM28-203ENST00000593582 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.69■■□□□ 1.06
TRIM28-203ENST00000593582 UPF1Q92900 1129 aaKnown RBP eCLIP21.68■■□□□ 1.06
TRIM28-203ENST00000593582 NUTM2GQ5VZR2 741 aa21.67■■□□□ 1.06
TRIM28-203ENST00000593582 ABTB2Q8N961 1025 aa21.67■■□□□ 1.06
TRIM28-203ENST00000593582 VPS72Q15906 364 aa21.66■■□□□ 1.06
TRIM28-203ENST00000593582 BRD4O60885 1362 aaPredicted RBP21.65■■□□□ 1.06
TRIM28-203ENST00000593582 SBNO2Q9Y2G9 1366 aa21.65■■□□□ 1.06
TRIM28-203ENST00000593582 PCGF6Q9BYE7 350 aa21.65■■□□□ 1.06
TRIM28-203ENST00000593582 PRDM11Q9NQV5 511 aa21.65■■□□□ 1.06
TRIM28-203ENST00000593582 BTG4Q9NY30 223 aa21.65■■□□□ 1.06
TRIM28-203ENST00000593582 CCDC9Q9Y3X0 531 aaKnown RBP21.65■■□□□ 1.06
TRIM28-203ENST00000593582 NWD2Q9ULI1 1742 aa21.65■■□□□ 1.06
TRIM28-203ENST00000593582 PLCH1Q4KWH8 1693 aa21.64■■□□□ 1.05
TRIM28-203ENST00000593582 ATAD2Q6PL18 1390 aa21.62■■□□□ 1.05
TRIM28-203ENST00000593582 USP6P35125 1406 aa21.62■■□□□ 1.05
TRIM28-203ENST00000593582 COL14A1Q05707 1796 aaKnown RBP21.61■■□□□ 1.05
TRIM28-203ENST00000593582 CRYBG1Q9Y4K1 1723 aa21.61■■□□□ 1.05
TRIM28-203ENST00000593582 NLRP13Q86W25 1043 aa21.61■■□□□ 1.05
TRIM28-203ENST00000593582 KIAA0232Q92628 1395 aa21.61■■□□□ 1.05
TRIM28-203ENST00000593582 ZC3H6P61129 1189 aaKnown RBP21.6■■□□□ 1.05
TRIM28-203ENST00000593582 ZNF692Q9BU19 519 aaPredicted RBP21.6■■□□□ 1.05
TRIM28-203ENST00000593582 GLI3P10071 1580 aa21.6■■□□□ 1.05
TRIM28-203ENST00000593582 CLSPNQ9HAW4 1339 aa21.59■■□□□ 1.05
TRIM28-203ENST00000593582 EP400Q96L91 3159 aa21.58■■□□□ 1.05
TRIM28-203ENST00000593582 PHRF1Q9P1Y6 1649 aaKnown RBP21.58■■□□□ 1.04
TRIM28-203ENST00000593582 USP19O94966 1318 aa21.57■■□□□ 1.04
TRIM28-203ENST00000593582 CHRNA2Q15822 529 aa21.57■■□□□ 1.04
TRIM28-203ENST00000593582 NLRP6P59044 892 aa21.56■■□□□ 1.04
TRIM28-203ENST00000593582 SEPT12Q8IYM1 358 aa21.56■■□□□ 1.04
TRIM28-203ENST00000593582 TIMELESSQ9UNS1 1208 aa21.56■■□□□ 1.04
TRIM28-203ENST00000593582 ONECUT3O60422 494 aaPredicted RBP21.55■■□□□ 1.04
TRIM28-203ENST00000593582 GCP02774 474 aa21.55■■□□□ 1.04
TRIM28-203ENST00000593582 NRAPQ86VF7 1730 aa21.55■■□□□ 1.04
TRIM28-203ENST00000593582 SSH2Q76I76 1423 aa21.55■■□□□ 1.04
TRIM28-203ENST00000593582 ST20-MTHFSA0A0A6YYL1 179 aa21.54■■□□□ 1.04
TRIM28-203ENST00000593582 SLC24A1O60721 1099 aa21.54■■□□□ 1.04
TRIM28-203ENST00000593582 NRKQ7Z2Y5 1582 aa21.53■■□□□ 1.04
TRIM28-203ENST00000593582 CPDO75976 1380 aa21.53■■□□□ 1.04
TRIM28-203ENST00000593582 TMC1Q8TDI8 760 aa21.53■■□□□ 1.04
TRIM28-203ENST00000593582 CPSF1Q10570 1443 aaKnown RBP21.53■■□□□ 1.04
TRIM28-203ENST00000593582 TTC21BQ7Z4L5 1316 aa21.53■■□□□ 1.04
TRIM28-203ENST00000593582 KTN1Q86UP2 1357 aaKnown RBP21.52■■□□□ 1.04
TRIM28-203ENST00000593582 A0A0G2JS52 829 aa21.52■■□□□ 1.04
TRIM28-203ENST00000593582 MYT1Q01538 1121 aa21.52■■□□□ 1.04
TRIM28-203ENST00000593582 FAM98CQ17RN3 349 aaKnown RBP21.52■■□□□ 1.04
TRIM28-203ENST00000593582 STRN4Q9NRL3 753 aa21.52■■□□□ 1.04
TRIM28-203ENST00000593582 SPATA31A5Q5VU36 1347 aa21.52■■□□□ 1.03
TRIM28-203ENST00000593582 SPATA31A7Q8IWB4 1347 aa21.52■■□□□ 1.03
TRIM28-203ENST00000593582 PUS7Q96PZ0 661 aaKnown RBP21.51■■□□□ 1.03
TRIM28-203ENST00000593582 TTC21AQ8NDW8 1320 aa21.51■■□□□ 1.03
TRIM28-203ENST00000593582 EVA1CP58658 441 aa21.5■■□□□ 1.03
TRIM28-203ENST00000593582 TESK2Q96S53 571 aa21.5■■□□□ 1.03
TRIM28-203ENST00000593582 KRT27Q7Z3Y8 459 aa21.48■■□□□ 1.03
TRIM28-203ENST00000593582 HDGFL2Q7Z4V5 671 aaPredicted RBP21.48■■□□□ 1.03
TRIM28-203ENST00000593582 CCDC125Q86Z20 511 aa21.48■■□□□ 1.03
TRIM28-203ENST00000593582 AKAP12Q02952 1782 aa21.48■■□□□ 1.03
TRIM28-203ENST00000593582 USP47Q96K76 1375 aa21.48■■□□□ 1.03
TRIM28-203ENST00000593582 PIK3C2AO00443 1686 aa21.47■■□□□ 1.03
TRIM28-203ENST00000593582 CCER1Q8TC90 406 aaPredicted RBP21.47■■□□□ 1.03
TRIM28-203ENST00000593582 SLC12A5Q9H2X9 1139 aa21.47■■□□□ 1.03
TRIM28-203ENST00000593582 TERF2IPQ9NYB0 399 aa21.47■■□□□ 1.03
TRIM28-203ENST00000593582 SPATA31A1Q5TZJ5 1347 aa21.47■■□□□ 1.03
TRIM28-203ENST00000593582 SLIT3O75094 1523 aa21.46■■□□□ 1.03
TRIM28-203ENST00000593582 ZBTB7CA1YPR0 619 aa21.46■■□□□ 1.03
TRIM28-203ENST00000593582 CAMTA1Q9Y6Y1 1673 aa21.45■■□□□ 1.02
TRIM28-203ENST00000593582 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.45■■□□□ 1.02
TRIM28-203ENST00000593582 KCNH5Q8NCM2 988 aa21.45■■□□□ 1.02
TRIM28-203ENST00000593582 CD163L1Q9NR16 1453 aa21.44■■□□□ 1.02
TRIM28-203ENST00000593582 LARP1Q6PKG0 1096 aaKnown RBP21.43■■□□□ 1.02
TRIM28-203ENST00000593582 USP35Q9P2H5 1018 aa21.43■■□□□ 1.02
TRIM28-203ENST00000593582 AATKQ6ZMQ8 1374 aa21.43■■□□□ 1.02
TRIM28-203ENST00000593582 NINLQ9Y2I6 1382 aa21.43■■□□□ 1.02
TRIM28-203ENST00000593582 BRWD3Q6RI45 1802 aa21.43■■□□□ 1.02
TRIM28-203ENST00000593582 TMF1P82094 1093 aa21.42■■□□□ 1.02
TRIM28-203ENST00000593582 MON2Q7Z3U7 1717 aa21.42■■□□□ 1.02
TRIM28-203ENST00000593582 LMO7Q8WWI1 1683 aa21.42■■□□□ 1.02
TRIM28-203ENST00000593582 A0A1W2PP64 1363 aa21.41■■□□□ 1.02
TRIM28-203ENST00000593582 SOX12O15370 315 aa21.41■■□□□ 1.02
TRIM28-203ENST00000593582 COL5A2P05997 1499 aaPredicted RBP21.4■■□□□ 1.02
TRIM28-203ENST00000593582 BLMP54132 1417 aaPredicted RBP21.4■■□□□ 1.02
TRIM28-203ENST00000593582 EDC4Q6P2E9 1401 aaKnown RBP21.4■■□□□ 1.02
TRIM28-203ENST00000593582 BARGINQ6ZT62 677 aa21.39■■□□□ 1.01
TRIM28-203ENST00000593582 ARHGEF25Q86VW2 580 aa21.39■■□□□ 1.01
TRIM28-203ENST00000593582 TCP11L2Q8N4U5 519 aa21.39■■□□□ 1.01
TRIM28-203ENST00000593582 USP31Q70CQ4 1352 aa21.38■■□□□ 1.01
TRIM28-203ENST00000593582 SF3B2Q13435 895 aaKnown RBP21.38■■□□□ 1.01
TRIM28-203ENST00000593582 NME9Q86XW9 330 aa21.38■■□□□ 1.01
TRIM28-203ENST00000593582 THSD7AQ9UPZ6 1657 aa21.37■■□□□ 1.01
TRIM28-203ENST00000593582 CDCA8Q53HL2 280 aa21.37■■□□□ 1.01
TRIM28-203ENST00000593582 ZRANB1Q9UGI0 708 aa21.37■■□□□ 1.01
TRIM28-203ENST00000593582 THRAP3Q9Y2W1 955 aaKnown RBP21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms