RNA–Protein interactions for RNA: ENST00000591849.5

BRCA1-227, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-227ENST00000591849 UPF1Q92900 1129 aaKnown RBP eCLIP14.13□□□□□ -0.15
BRCA1-227ENST00000591849 RGPD8O14715 1765 aaPredicted RBP14.13□□□□□ -0.15
BRCA1-227ENST00000591849 USP32Q8NFA0 1604 aa14.12□□□□□ -0.15
BRCA1-227ENST00000591849 ATAD2Q6PL18 1390 aa14.12□□□□□ -0.15
BRCA1-227ENST00000591849 ZNF692Q9BU19 519 aaPredicted RBP14.12□□□□□ -0.15
BRCA1-227ENST00000591849 QRICH2Q9H0J4 1663 aa14.11□□□□□ -0.15
BRCA1-227ENST00000591849 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.11□□□□□ -0.15
BRCA1-227ENST00000591849 POLR3AO14802 1390 aaPredicted RBP14.1□□□□□ -0.15
BRCA1-227ENST00000591849 SBNO2Q9Y2G9 1366 aa14.1□□□□□ -0.15
BRCA1-227ENST00000591849 TMF1P82094 1093 aa14.1□□□□□ -0.15
BRCA1-227ENST00000591849 HDGFL2Q7Z4V5 671 aaPredicted RBP14.1□□□□□ -0.15
BRCA1-227ENST00000591849 NLRP13Q86W25 1043 aa14.1□□□□□ -0.15
BRCA1-227ENST00000591849 TRPC5Q9UL62 973 aaPredicted RBP14.1□□□□□ -0.15
BRCA1-227ENST00000591849 EP400Q96L91 3159 aa14.1□□□□□ -0.15
BRCA1-227ENST00000591849 USP47Q96K76 1375 aa14.09□□□□□ -0.15
BRCA1-227ENST00000591849 RBM6P78332 1123 aaKnown RBP14.09□□□□□ -0.15
BRCA1-227ENST00000591849 FNBP4Q8N3X1 1017 aaPredicted RBP14.09□□□□□ -0.15
BRCA1-227ENST00000591849 NLRP6P59044 892 aa14.08□□□□□ -0.16
BRCA1-227ENST00000591849 CDCA8Q53HL2 280 aa14.08□□□□□ -0.16
BRCA1-227ENST00000591849 TERF2IPQ9NYB0 399 aa14.08□□□□□ -0.16
BRCA1-227ENST00000591849 CCDC9Q9Y3X0 531 aaKnown RBP14.08□□□□□ -0.16
BRCA1-227ENST00000591849 BRD4O60885 1362 aaPredicted RBP14.08□□□□□ -0.16
BRCA1-227ENST00000591849 ITSN1Q15811 1721 aa14.07□□□□□ -0.16
BRCA1-227ENST00000591849 PUS7Q96PZ0 661 aaKnown RBP14.07□□□□□ -0.16
BRCA1-227ENST00000591849 TESK2Q96S53 571 aa14.07□□□□□ -0.16
BRCA1-227ENST00000591849 SLC12A5Q9H2X9 1139 aa14.07□□□□□ -0.16
BRCA1-227ENST00000591849 PRDM11Q9NQV5 511 aa14.07□□□□□ -0.16
BRCA1-227ENST00000591849 ZBTB7CA1YPR0 619 aa14.06□□□□□ -0.16
BRCA1-227ENST00000591849 FAM83GA6ND36 823 aa14.06□□□□□ -0.16
BRCA1-227ENST00000591849 ZC3H6P61129 1189 aaKnown RBP14.06□□□□□ -0.16
BRCA1-227ENST00000591849 UNC5CLQ8IV45 518 aa14.06□□□□□ -0.16
BRCA1-227ENST00000591849 KTN1Q86UP2 1357 aaKnown RBP14.06□□□□□ -0.16
BRCA1-227ENST00000591849 EIF4G2P78344 907 aaKnown RBP eCLIP14.05□□□□□ -0.16
BRCA1-227ENST00000591849 POLR3GLQ9BT43 218 aa14.05□□□□□ -0.16
BRCA1-227ENST00000591849 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.04□□□□□ -0.16
BRCA1-227ENST00000591849 TTC21BQ7Z4L5 1316 aa14.04□□□□□ -0.16
BRCA1-227ENST00000591849 ATRNO75882 1429 aa14.04□□□□□ -0.16
BRCA1-227ENST00000591849 USP6P35125 1406 aa14.04□□□□□ -0.16
BRCA1-227ENST00000591849 ABCA3Q99758 1704 aa14.04□□□□□ -0.16
BRCA1-227ENST00000591849 BTG4Q9NY30 223 aa14.03□□□□□ -0.16
BRCA1-227ENST00000591849 TTC21AQ8NDW8 1320 aa14.02□□□□□ -0.17
BRCA1-227ENST00000591849 GCP02774 474 aa14.02□□□□□ -0.17
BRCA1-227ENST00000591849 EVA1CP58658 441 aa14.02□□□□□ -0.17
BRCA1-227ENST00000591849 CHRNA2Q15822 529 aa14.02□□□□□ -0.17
BRCA1-227ENST00000591849 GJD4Q96KN9 370 aaPredicted RBP14.02□□□□□ -0.17
BRCA1-227ENST00000591849 SOX12O15370 315 aa14.01□□□□□ -0.17
BRCA1-227ENST00000591849 HSPA5P11021 654 aaKnown RBP14.01□□□□□ -0.17
BRCA1-227ENST00000591849 NWD2Q9ULI1 1742 aa14.01□□□□□ -0.17
BRCA1-227ENST00000591849 TOPAZ1Q8N9V7 1692 aa14.01□□□□□ -0.17
BRCA1-227ENST00000591849 SRCAPQ6ZRS2 3230 aa14□□□□□ -0.17
BRCA1-227ENST00000591849 A0A0G2JS52 829 aa14□□□□□ -0.17
BRCA1-227ENST00000591849 MYT1Q01538 1121 aa14□□□□□ -0.17
BRCA1-227ENST00000591849 STRN4Q9NRL3 753 aa14□□□□□ -0.17
BRCA1-227ENST00000591849 TRPM3Q9HCF6 1732 aaPredicted RBP14□□□□□ -0.17
BRCA1-227ENST00000591849 PLCH1Q4KWH8 1693 aa14□□□□□ -0.17
BRCA1-227ENST00000591849 BCL9LQ86UU0 1499 aa13.99□□□□□ -0.17
BRCA1-227ENST00000591849 KIAA0232Q92628 1395 aa13.99□□□□□ -0.17
BRCA1-227ENST00000591849 NINLQ9Y2I6 1382 aa13.99□□□□□ -0.17
BRCA1-227ENST00000591849 VPS72Q15906 364 aa13.99□□□□□ -0.17
BRCA1-227ENST00000591849 KCNH5Q8NCM2 988 aa13.99□□□□□ -0.17
BRCA1-227ENST00000591849 CPSF1Q10570 1443 aaKnown RBP13.98□□□□□ -0.17
BRCA1-227ENST00000591849 USP19O94966 1318 aa13.98□□□□□ -0.17
BRCA1-227ENST00000591849 BRWD3Q6RI45 1802 aa13.98□□□□□ -0.17
BRCA1-227ENST00000591849 SLIT2O94813 1529 aa13.98□□□□□ -0.17
BRCA1-227ENST00000591849 NME9Q86XW9 330 aa13.97□□□□□ -0.17
BRCA1-227ENST00000591849 ALS2Q96Q42 1657 aa13.97□□□□□ -0.17
BRCA1-227ENST00000591849 GLI3P10071 1580 aa13.96□□□□□ -0.17
BRCA1-227ENST00000591849 SSH2Q76I76 1423 aa13.96□□□□□ -0.18
BRCA1-227ENST00000591849 ZRANB1Q9UGI0 708 aa13.95□□□□□ -0.18
BRCA1-227ENST00000591849 A0A1W2PP64 1363 aa13.95□□□□□ -0.18
BRCA1-227ENST00000591849 EDC4Q6P2E9 1401 aaKnown RBP13.94□□□□□ -0.18
BRCA1-227ENST00000591849 COG3Q96JB2 828 aa13.94□□□□□ -0.18
BRCA1-227ENST00000591849 FAM98CQ17RN3 349 aaKnown RBP13.93□□□□□ -0.18
BRCA1-227ENST00000591849 SEPT12Q8IYM1 358 aa13.93□□□□□ -0.18
BRCA1-227ENST00000591849 USP35Q9P2H5 1018 aa13.93□□□□□ -0.18
BRCA1-227ENST00000591849 CPDO75976 1380 aa13.93□□□□□ -0.18
BRCA1-227ENST00000591849 ANKRD36BQ8N2N9 1353 aa13.93□□□□□ -0.18
BRCA1-227ENST00000591849 CSB-PGBD3P0DP91 1061 aa13.92□□□□□ -0.18
BRCA1-227ENST00000591849 CCDC125Q86Z20 511 aa13.92□□□□□ -0.18
BRCA1-227ENST00000591849 NRAPQ86VF7 1730 aa13.92□□□□□ -0.18
BRCA1-227ENST00000591849 CRYBG1Q9Y4K1 1723 aa13.91□□□□□ -0.18
BRCA1-227ENST00000591849 ARHGEF25Q86VW2 580 aa13.91□□□□□ -0.18
BRCA1-227ENST00000591849 CD163L1Q9NR16 1453 aa13.91□□□□□ -0.18
BRCA1-227ENST00000591849 COL14A1Q05707 1796 aaKnown RBP13.91□□□□□ -0.18
BRCA1-227ENST00000591849 SPATA31A5Q5VU36 1347 aa13.9□□□□□ -0.18
BRCA1-227ENST00000591849 SPATA31A7Q8IWB4 1347 aa13.9□□□□□ -0.18
BRCA1-227ENST00000591849 LARP1Q6PKG0 1096 aaKnown RBP13.9□□□□□ -0.18
BRCA1-227ENST00000591849 TOM1L2Q6ZVM7 507 aa13.9□□□□□ -0.18
BRCA1-227ENST00000591849 USP31Q70CQ4 1352 aa13.9□□□□□ -0.18
BRCA1-227ENST00000591849 AATKQ6ZMQ8 1374 aa13.89□□□□□ -0.19
BRCA1-227ENST00000591849 GGNBP2Q9H3C7 697 aa13.89□□□□□ -0.19
BRCA1-227ENST00000591849 KRT27Q7Z3Y8 459 aa13.88□□□□□ -0.19
BRCA1-227ENST00000591849 TCP11L2Q8N4U5 519 aa13.88□□□□□ -0.19
BRCA1-227ENST00000591849 BLMP54132 1417 aaPredicted RBP13.88□□□□□ -0.19
BRCA1-227ENST00000591849 SPATA31A1Q5TZJ5 1347 aa13.88□□□□□ -0.19
BRCA1-227ENST00000591849 PHRF1Q9P1Y6 1649 aaKnown RBP13.87□□□□□ -0.19
BRCA1-227ENST00000591849 AKAP12Q02952 1782 aa13.87□□□□□ -0.19
BRCA1-227ENST00000591849 FYB1O15117 783 aa13.87□□□□□ -0.19
BRCA1-227ENST00000591849 ONECUT3O60422 494 aaPredicted RBP13.87□□□□□ -0.19
BRCA1-227ENST00000591849 AMPHP49418 695 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms