RNA–Protein interactions for RNA: ENST00000591764.1

DNMT1-224, Transcript of DNA methyltransferase 1, humanhuman

TSL 1 (best)

Gene DNMT1, Length 341 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-224ENST00000591764 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.69□□□□□ -0.38
DNMT1-224ENST00000591764 NCOA3Q9Y6Q9 1424 aa12.69□□□□□ -0.38
DNMT1-224ENST00000591764 GCC2Q8IWJ2 1684 aa12.68□□□□□ -0.38
DNMT1-224ENST00000591764 ARSIQ5FYB1 569 aa12.68□□□□□ -0.38
DNMT1-224ENST00000591764 VARS2Q5ST30 1063 aaKnown RBP12.68□□□□□ -0.38
DNMT1-224ENST00000591764 RIMS2Q9UQ26 1411 aa12.68□□□□□ -0.38
DNMT1-224ENST00000591764 CHD2O14647 1828 aaKnown RBP12.67□□□□□ -0.38
DNMT1-224ENST00000591764 FAM50AQ14320 339 aaKnown RBP12.67□□□□□ -0.38
DNMT1-224ENST00000591764 POTEAQ6S8J7 498 aa12.67□□□□□ -0.38
DNMT1-224ENST00000591764 HS6ST3Q8IZP7 471 aa12.67□□□□□ -0.38
DNMT1-224ENST00000591764 KHSRPQ92945 711 aaKnown RBP eCLIP12.67□□□□□ -0.38
DNMT1-224ENST00000591764 RBM33Q96EV2 1170 aaKnown RBP12.67□□□□□ -0.38
DNMT1-224ENST00000591764 RTN4Q9NQC3 1192 aaKnown RBP12.67□□□□□ -0.38
DNMT1-224ENST00000591764 ZFYVE9O95405 1425 aa12.67□□□□□ -0.38
DNMT1-224ENST00000591764 DIP2AQ14689 1571 aa12.67□□□□□ -0.38
DNMT1-224ENST00000591764 MEX3CQ5U5Q3 659 aaKnown RBP12.66□□□□□ -0.38
DNMT1-224ENST00000591764 MYO5BQ9ULV0 1848 aa12.66□□□□□ -0.38
DNMT1-224ENST00000591764 SPATA31A6Q5VVP1 1343 aa12.65□□□□□ -0.38
DNMT1-224ENST00000591764 CADPS2Q86UW7 1296 aa12.65□□□□□ -0.38
DNMT1-224ENST00000591764 TMEM131LA2VDJ0 1609 aa12.65□□□□□ -0.38
DNMT1-224ENST00000591764 PIK3R4Q99570 1358 aa12.65□□□□□ -0.38
DNMT1-224ENST00000591764 CHGAP10645 457 aaKnown RBP12.64□□□□□ -0.39
DNMT1-224ENST00000591764 ATF3P18847 181 aa12.64□□□□□ -0.39
DNMT1-224ENST00000591764 TBX22Q9Y458 520 aa12.64□□□□□ -0.39
DNMT1-224ENST00000591764 COL16A1Q07092 1604 aaPredicted RBP12.63□□□□□ -0.39
DNMT1-224ENST00000591764 AMER1Q5JTC6 1135 aaPredicted RBP12.63□□□□□ -0.39
DNMT1-224ENST00000591764 ZNF772Q68DY9 489 aaPredicted RBP12.63□□□□□ -0.39
DNMT1-224ENST00000591764 UNC13BO14795 1591 aa12.63□□□□□ -0.39
DNMT1-224ENST00000591764 C19orf44Q9H6X5 657 aa12.62□□□□□ -0.39
DNMT1-224ENST00000591764 AHDC1Q5TGY3 1603 aaPredicted RBP12.62□□□□□ -0.39
DNMT1-224ENST00000591764 TRPM2O94759 1503 aa12.62□□□□□ -0.39
DNMT1-224ENST00000591764 SETD1AO15047 1707 aaKnown RBP12.61□□□□□ -0.39
DNMT1-224ENST00000591764 SHPRHQ149N8 1683 aa12.6□□□□□ -0.39
DNMT1-224ENST00000591764 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.59□□□□□ -0.39
DNMT1-224ENST00000591764 DCCP43146 1447 aa12.59□□□□□ -0.39
DNMT1-224ENST00000591764 IQGAP3Q86VI3 1631 aa12.59□□□□□ -0.39
DNMT1-224ENST00000591764 ROCK1Q13464 1354 aa12.58□□□□□ -0.4
DNMT1-224ENST00000591764 E9PCH4 1651 aa12.58□□□□□ -0.4
DNMT1-224ENST00000591764 NKX1-1Q15270 411 aaPredicted RBP12.58□□□□□ -0.4
DNMT1-224ENST00000591764 ADAMTS13Q76LX8 1427 aa12.58□□□□□ -0.4
DNMT1-224ENST00000591764 TMC2Q8TDI7 906 aa12.58□□□□□ -0.4
DNMT1-224ENST00000591764 ZNF687Q8N1G0 1237 aa12.57□□□□□ -0.4
DNMT1-224ENST00000591764 LRP6O75581 1613 aa12.56□□□□□ -0.4
DNMT1-224ENST00000591764 ZNF316A6NFI3 1004 aaPredicted RBP12.55□□□□□ -0.4
DNMT1-224ENST00000591764 RXRBP28702 533 aa12.55□□□□□ -0.4
DNMT1-224ENST00000591764 NUTM2DQ5VT03 806 aaPredicted RBP12.55□□□□□ -0.4
DNMT1-224ENST00000591764 AMOTL2Q9Y2J4 779 aa12.55□□□□□ -0.4
DNMT1-224ENST00000591764 NUP155O75694 1391 aa12.55□□□□□ -0.4
DNMT1-224ENST00000591764 NUDT7P0C024 238 aa12.54□□□□□ -0.4
DNMT1-224ENST00000591764 TRIM52Q96A61 297 aa12.54□□□□□ -0.4
DNMT1-224ENST00000591764 CDK12Q9NYV4 1490 aaPredicted RBP12.53□□□□□ -0.4
DNMT1-224ENST00000591764 ASXL1Q8IXJ9 1541 aa12.53□□□□□ -0.4
DNMT1-224ENST00000591764 BRINP3Q76B58 766 aa12.53□□□□□ -0.4
DNMT1-224ENST00000591764 PCDHGA4Q9Y5G9 962 aa12.53□□□□□ -0.4
DNMT1-224ENST00000591764 SETBP1Q9Y6X0 1596 aa12.52□□□□□ -0.4
DNMT1-224ENST00000591764 NUTM2BA6NNL0 878 aaPredicted RBP12.52□□□□□ -0.41
DNMT1-224ENST00000591764 NUTM2EB1AL46 878 aaPredicted RBP12.52□□□□□ -0.41
DNMT1-224ENST00000591764 SLC34A2O95436 690 aa12.52□□□□□ -0.41
DNMT1-224ENST00000591764 NUTM2AQ8IVF1 878 aaPredicted RBP12.52□□□□□ -0.41
DNMT1-224ENST00000591764 SPHKAPQ2M3C7 1700 aa12.51□□□□□ -0.41
DNMT1-224ENST00000591764 XRN1Q8IZH2 1706 aaKnown RBP12.51□□□□□ -0.41
DNMT1-224ENST00000591764 ZNF326Q5BKZ1 582 aaKnown RBP12.51□□□□□ -0.41
DNMT1-224ENST00000591764 UPF1Q92900 1129 aaKnown RBP eCLIP12.51□□□□□ -0.41
DNMT1-224ENST00000591764 SETD5Q9C0A6 1442 aa12.51□□□□□ -0.41
DNMT1-224ENST00000591764 LRRC59Q96AG4 307 aaKnown RBP12.5□□□□□ -0.41
DNMT1-224ENST00000591764 NHSL1Q5SYE7 1610 aa12.49□□□□□ -0.41
DNMT1-224ENST00000591764 PTPRUQ92729 1446 aa12.49□□□□□ -0.41
DNMT1-224ENST00000591764 AFF2P51816 1311 aa12.49□□□□□ -0.41
DNMT1-224ENST00000591764 MST1RQ04912 1400 aa12.48□□□□□ -0.41
DNMT1-224ENST00000591764 ADGRL3Q9HAR2 1447 aa12.48□□□□□ -0.41
DNMT1-224ENST00000591764 NRXN3Q9Y4C0 1643 aa12.48□□□□□ -0.41
DNMT1-224ENST00000591764 LHX6Q9UPM6 363 aa12.47□□□□□ -0.41
DNMT1-224ENST00000591764 ITGAEP38570 1179 aa12.46□□□□□ -0.41
DNMT1-224ENST00000591764 C8orf37Q96NL8 207 aa12.46□□□□□ -0.41
DNMT1-224ENST00000591764 RBM6P78332 1123 aaKnown RBP12.45□□□□□ -0.42
DNMT1-224ENST00000591764 FOXK1P85037 733 aa12.45□□□□□ -0.42
DNMT1-224ENST00000591764 NGLY1Q96IV0 654 aa12.45□□□□□ -0.42
DNMT1-224ENST00000591764 METP08581 1390 aa12.44□□□□□ -0.42
DNMT1-224ENST00000591764 KIF1BO60333 1816 aa12.44□□□□□ -0.42
DNMT1-224ENST00000591764 DSG2Q14126 1118 aa12.44□□□□□ -0.42
DNMT1-224ENST00000591764 PLPP6Q8IY26 295 aa12.44□□□□□ -0.42
DNMT1-224ENST00000591764 GPHNQ9NQX3 736 aaPredicted RBP12.44□□□□□ -0.42
DNMT1-224ENST00000591764 PNPLA6Q8IY17 1366 aa12.43□□□□□ -0.42
DNMT1-224ENST00000591764 NALCNQ8IZF0 1738 aa12.43□□□□□ -0.42
DNMT1-224ENST00000591764 QTRT2Q9H974 415 aaKnown RBP12.43□□□□□ -0.42
DNMT1-224ENST00000591764 PTCH1Q13635 1447 aa12.43□□□□□ -0.42
DNMT1-224ENST00000591764 NEXMIFQ5QGS0 1516 aa12.42□□□□□ -0.42
DNMT1-224ENST00000591764 POTEEQ6S8J3 1075 aa12.42□□□□□ -0.42
DNMT1-224ENST00000591764 RGS12O14924 1447 aa12.42□□□□□ -0.42
DNMT1-224ENST00000591764 CLTCL1P53675 1640 aa12.41□□□□□ -0.42
DNMT1-224ENST00000591764 ATAD2Q6PL18 1390 aa12.41□□□□□ -0.42
DNMT1-224ENST00000591764 C1orf167Q5SNV9 1468 aa12.4□□□□□ -0.42
DNMT1-224ENST00000591764 PTCD2Q8WV60 388 aaKnown RBP12.4□□□□□ -0.42
DNMT1-224ENST00000591764 LAMC1P11047 1609 aa12.4□□□□□ -0.42
DNMT1-224ENST00000591764 ADAMTS2O95450 1211 aa12.39□□□□□ -0.43
DNMT1-224ENST00000591764 ANKRD13DQ6ZTN6 518 aa12.39□□□□□ -0.43
DNMT1-224ENST00000591764 HFM1A2PYH4 1435 aa12.38□□□□□ -0.43
DNMT1-224ENST00000591764 LSM11P83369 360 aaKnown RBP eCLIP12.38□□□□□ -0.43
DNMT1-224ENST00000591764 RNF166Q96A37 237 aaPredicted RBP12.38□□□□□ -0.43
DNMT1-224ENST00000591764 TRPC5Q9UL62 973 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms