RNA–Protein interactions for RNA: ENST00000589677.5

SMARCA4-214, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,181 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-214ENST00000589677 SYCE3A1L190 88 aa17.44■□□□□ 0.38
SMARCA4-214ENST00000589677 PDIA4P13667 645 aaKnown RBP17.44■□□□□ 0.38
SMARCA4-214ENST00000589677 SMARCE1Q969G3 411 aa17.44■□□□□ 0.38
SMARCA4-214ENST00000589677 AXDND1Q5T1B0 1012 aaPredicted RBP17.44■□□□□ 0.38
SMARCA4-214ENST00000589677 MPNDQ8N594 471 aa17.44■□□□□ 0.38
SMARCA4-214ENST00000589677 KRT85P78386 507 aa17.43■□□□□ 0.38
SMARCA4-214ENST00000589677 PDE4CQ08493 712 aa17.43■□□□□ 0.38
SMARCA4-214ENST00000589677 TRDNQ13061 729 aa17.43■□□□□ 0.38
SMARCA4-214ENST00000589677 SAFBQ15424 915 aaKnown RBP eCLIP17.43■□□□□ 0.38
SMARCA4-214ENST00000589677 MARCH6O60337 910 aa17.43■□□□□ 0.38
SMARCA4-214ENST00000589677 SCAPERQ9BY12 1400 aa17.43■□□□□ 0.38
SMARCA4-214ENST00000589677 EXOSC9Q06265 439 aaKnown RBP17.43■□□□□ 0.38
SMARCA4-214ENST00000589677 TBC1D2Q9BYX2 928 aa17.43■□□□□ 0.38
SMARCA4-214ENST00000589677 FYCO1Q9BQS8 1478 aa17.43■□□□□ 0.38
SMARCA4-214ENST00000589677 PRXQ9BXM0 1461 aa17.43■□□□□ 0.38
SMARCA4-214ENST00000589677 MRC2Q9UBG0 1479 aa17.43■□□□□ 0.38
SMARCA4-214ENST00000589677 PRIMPOLQ96LW4 560 aa17.42■□□□□ 0.38
SMARCA4-214ENST00000589677 VGFO15240 615 aaPredicted RBP17.42■□□□□ 0.38
SMARCA4-214ENST00000589677 NEXNQ0ZGT2 675 aa17.42■□□□□ 0.38
SMARCA4-214ENST00000589677 NOB1Q9ULX3 412 aaKnown RBP17.41■□□□□ 0.38
SMARCA4-214ENST00000589677 PLEKHH2Q8IVE3 1493 aa17.41■□□□□ 0.38
SMARCA4-214ENST00000589677 TMCO3Q6UWJ1 677 aa17.41■□□□□ 0.38
SMARCA4-214ENST00000589677 GNAI3P08754 354 aa17.41■□□□□ 0.38
SMARCA4-214ENST00000589677 FILIP1LQ4L180 1135 aa17.41■□□□□ 0.38
SMARCA4-214ENST00000589677 TOPBP1Q92547 1522 aa17.41■□□□□ 0.38
SMARCA4-214ENST00000589677 NESP48681 1621 aa17.41■□□□□ 0.38
SMARCA4-214ENST00000589677 UBXN4Q92575 508 aa17.4■□□□□ 0.38
SMARCA4-214ENST00000589677 HIP1O00291 1037 aa17.4■□□□□ 0.38
SMARCA4-214ENST00000589677 SLFN5Q08AF3 891 aa17.4■□□□□ 0.38
SMARCA4-214ENST00000589677 NBPF8Q3BBV2 869 aa17.4■□□□□ 0.38
SMARCA4-214ENST00000589677 ATF7IPQ6VMQ6 1270 aa17.4■□□□□ 0.38
SMARCA4-214ENST00000589677 ZHX1Q9UKY1 873 aaPredicted RBP17.4■□□□□ 0.38
SMARCA4-214ENST00000589677 EFCAB5A4FU69 1503 aa17.4■□□□□ 0.38
SMARCA4-214ENST00000589677 TNPO1Q92973 898 aaKnown RBP17.39■□□□□ 0.38
SMARCA4-214ENST00000589677 ARAP1Q96P48 1450 aa17.39■□□□□ 0.37
SMARCA4-214ENST00000589677 CBFA2T2O43439 604 aa17.39■□□□□ 0.37
SMARCA4-214ENST00000589677 NAP1L1P55209 391 aaKnown RBP17.39■□□□□ 0.37
SMARCA4-214ENST00000589677 NUP62CLQ9H1M0 184 aa17.39■□□□□ 0.37
SMARCA4-214ENST00000589677 ZNF330Q9Y3S2 320 aaPredicted RBP17.39■□□□□ 0.37
SMARCA4-214ENST00000589677 IFT140Q96RY7 1462 aa17.39■□□□□ 0.37
SMARCA4-214ENST00000589677 NCOA2Q15596 1464 aa17.38■□□□□ 0.37
SMARCA4-214ENST00000589677 HFM1A2PYH4 1435 aa17.38■□□□□ 0.37
SMARCA4-214ENST00000589677 ANKRD1Q15327 319 aa17.38■□□□□ 0.37
SMARCA4-214ENST00000589677 PPP4R3BQ5MIZ7 849 aa17.38■□□□□ 0.37
SMARCA4-214ENST00000589677 FOSBP53539 338 aa17.38■□□□□ 0.37
SMARCA4-214ENST00000589677 HSP90AB3PQ58FF7 597 aa17.38■□□□□ 0.37
SMARCA4-214ENST00000589677 MTHFSP49914 203 aa17.37■□□□□ 0.37
SMARCA4-214ENST00000589677 FMNL2Q96PY5 1086 aa17.37■□□□□ 0.37
SMARCA4-214ENST00000589677 UBTFL1P0CB47 393 aaPredicted RBP17.37■□□□□ 0.37
SMARCA4-214ENST00000589677 DNAJC5BQ9UF47 199 aa17.37■□□□□ 0.37
SMARCA4-214ENST00000589677 MYO6Q9UM54 1294 aa17.37■□□□□ 0.37
SMARCA4-214ENST00000589677 PTPN14Q15678 1187 aa17.37■□□□□ 0.37
SMARCA4-214ENST00000589677 SERPINC1P01008 464 aa17.37■□□□□ 0.37
SMARCA4-214ENST00000589677 CYP46A1Q9Y6A2 500 aa17.37■□□□□ 0.37
SMARCA4-214ENST00000589677 XRCC6P12956 609 aaKnown RBP eCLIP17.36■□□□□ 0.37
SMARCA4-214ENST00000589677 PIP4K2AP48426 406 aaPredicted RBP17.36■□□□□ 0.37
SMARCA4-214ENST00000589677 CCDC183Q5T5S1 534 aa17.36■□□□□ 0.37
SMARCA4-214ENST00000589677 ZSCAN31Q96LW9 406 aaPredicted RBP17.36■□□□□ 0.37
SMARCA4-214ENST00000589677 DDX58O95786 925 aaKnown RBP17.36■□□□□ 0.37
SMARCA4-214ENST00000589677 CSB-PGBD3P0DP91 1061 aa17.36■□□□□ 0.37
SMARCA4-214ENST00000589677 NGDNQ8NEJ9 315 aaKnown RBP17.36■□□□□ 0.37
SMARCA4-214ENST00000589677 ANKRD50Q9ULJ7 1429 aa17.36■□□□□ 0.37
SMARCA4-214ENST00000589677 CEP57L1Q8IYX8 460 aa17.36■□□□□ 0.37
SMARCA4-214ENST00000589677 POLA1P09884 1462 aaPredicted RBP17.36■□□□□ 0.37
SMARCA4-214ENST00000589677 MAP3K11Q16584 847 aa17.35■□□□□ 0.37
SMARCA4-214ENST00000589677 FILIP1Q7Z7B0 1213 aa17.35■□□□□ 0.37
SMARCA4-214ENST00000589677 KIF18AQ8NI77 898 aa17.35■□□□□ 0.37
SMARCA4-214ENST00000589677 CCDC9Q9Y3X0 531 aaKnown RBP17.35■□□□□ 0.37
SMARCA4-214ENST00000589677 NFXL1Q6ZNB6 911 aa17.35■□□□□ 0.37
SMARCA4-214ENST00000589677 TEFQ10587 303 aa17.35■□□□□ 0.37
SMARCA4-214ENST00000589677 PRDM2Q13029 1718 aa17.35■□□□□ 0.37
SMARCA4-214ENST00000589677 NUTM2DQ5VT03 806 aaPredicted RBP17.35■□□□□ 0.37
SMARCA4-214ENST00000589677 TTLL5Q6EMB2 1281 aa17.34■□□□□ 0.37
SMARCA4-214ENST00000589677 RALYLQ86SE5 291 aaKnown RBP17.34■□□□□ 0.37
SMARCA4-214ENST00000589677 GBP3Q9H0R5 595 aa17.34■□□□□ 0.37
SMARCA4-214ENST00000589677 STK38Q15208 465 aa17.34■□□□□ 0.37
SMARCA4-214ENST00000589677 CLASRPQ8N2M8 674 aaKnown RBP17.34■□□□□ 0.37
SMARCA4-214ENST00000589677 TSPYL4Q9UJ04 414 aa17.34■□□□□ 0.37
SMARCA4-214ENST00000589677 KLHL40Q2TBA0 621 aa17.34■□□□□ 0.37
SMARCA4-214ENST00000589677 EIF2S2P20042 333 aaKnown RBP17.34■□□□□ 0.37
SMARCA4-214ENST00000589677 NBPF1Q3BBV0 1214 aa17.34■□□□□ 0.37
SMARCA4-214ENST00000589677 C1orf115Q9H7X2 142 aa17.34■□□□□ 0.37
SMARCA4-214ENST00000589677 DNMBPQ6XZF7 1577 aa17.33■□□□□ 0.37
SMARCA4-214ENST00000589677 LARP1BQ659C4 914 aaKnown RBP17.33■□□□□ 0.37
SMARCA4-214ENST00000589677 JMYQ8N9B5 988 aa17.33■□□□□ 0.37
SMARCA4-214ENST00000589677 GTPBP4Q9BZE4 634 aaKnown RBP17.33■□□□□ 0.37
SMARCA4-214ENST00000589677 DACH1Q9UI36 760 aa17.33■□□□□ 0.37
SMARCA4-214ENST00000589677 UVSSAQ2YD98 709 aa17.33■□□□□ 0.36
SMARCA4-214ENST00000589677 SPATA32Q96LK8 384 aa17.33■□□□□ 0.36
SMARCA4-214ENST00000589677 SRCIN1Q9C0H9 1055 aa17.33■□□□□ 0.36
SMARCA4-214ENST00000589677 GOLGA6L7A0A1B0GV03 622 aa17.32■□□□□ 0.36
SMARCA4-214ENST00000589677 DHX16O60231 1041 aaKnown RBP17.32■□□□□ 0.36
SMARCA4-214ENST00000589677 PPFIBP1Q86W92 1011 aa17.32■□□□□ 0.36
SMARCA4-214ENST00000589677 TIGD1Q96MW7 591 aa17.32■□□□□ 0.36
SMARCA4-214ENST00000589677 EID1Q9Y6B2 187 aa17.32■□□□□ 0.36
SMARCA4-214ENST00000589677 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.32■□□□□ 0.361e-8■■□□□ 13.7
SMARCA4-214ENST00000589677 ZNF428Q96B54 188 aa17.32■□□□□ 0.36
SMARCA4-214ENST00000589677 CFAP45Q9UL16 551 aa17.32■□□□□ 0.36
SMARCA4-214ENST00000589677 ERICH2A1L162 156 aa17.32■□□□□ 0.36
SMARCA4-214ENST00000589677 GOLGA6L10A6NI86 522 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms