RNA–Protein interactions for RNA: ENST00000589520.1

VPS25-203, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 3

Gene VPS25, Length 639 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-203ENST00000589520 IRX6P78412 446 aaPredicted RBP13.62□□□□□ -0.23
VPS25-203ENST00000589520 DUSP27Q5VZP5 1158 aa13.62□□□□□ -0.23
VPS25-203ENST00000589520 ANKLE2Q86XL3 938 aa13.62□□□□□ -0.23
VPS25-203ENST00000589520 CDC42BPGQ6DT37 1551 aa13.62□□□□□ -0.23
VPS25-203ENST00000589520 AATKQ6ZMQ8 1374 aa13.61□□□□□ -0.23
VPS25-203ENST00000589520 CCDC146Q8IYE0 955 aa13.61□□□□□ -0.23
VPS25-203ENST00000589520 DIAPH1O60610 1272 aaKnown RBP13.6□□□□□ -0.23
VPS25-203ENST00000589520 PHF23Q9BUL5 403 aaPredicted RBP13.6□□□□□ -0.23
VPS25-203ENST00000589520 ANKRD26Q9UPS8 1709 aa13.6□□□□□ -0.23
VPS25-203ENST00000589520 U2AF1L5P0DN76 240 aaPredicted RBP13.59□□□□□ -0.23
VPS25-203ENST00000589520 U2AF1Q01081 240 aaKnown RBP eCLIP13.59□□□□□ -0.23
VPS25-203ENST00000589520 WWC1Q8IX03 1113 aa13.59□□□□□ -0.23
VPS25-203ENST00000589520 COG3Q96JB2 828 aa13.59□□□□□ -0.23
VPS25-203ENST00000589520 SLC26A8Q96RN1 970 aa13.59□□□□□ -0.23
VPS25-203ENST00000589520 CEP170BQ9Y4F5 1589 aaPredicted RBP13.58□□□□□ -0.23
VPS25-203ENST00000589520 FCHSD2O94868 740 aa13.58□□□□□ -0.24
VPS25-203ENST00000589520 TCP11L2Q8N4U5 519 aa13.58□□□□□ -0.24
VPS25-203ENST00000589520 IQSEC2Q5JU85 1478 aa13.58□□□□□ -0.24
VPS25-203ENST00000589520 PTPRUQ92729 1446 aa13.57□□□□□ -0.24
VPS25-203ENST00000589520 SENP3-EIF4A1A0A087X0R7 540 aa13.57□□□□□ -0.24
VPS25-203ENST00000589520 NEFMP07197 916 aa13.57□□□□□ -0.24
VPS25-203ENST00000589520 SHPRHQ149N8 1683 aa13.56□□□□□ -0.24
VPS25-203ENST00000589520 NKTRP30414 1462 aaKnown RBP13.56□□□□□ -0.24
VPS25-203ENST00000589520 CT47B1P0C2W7 299 aaPredicted RBP13.56□□□□□ -0.24
VPS25-203ENST00000589520 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.56□□□□□ -0.24
VPS25-203ENST00000589520 CCDC136Q96JN2 1154 aa13.56□□□□□ -0.24
VPS25-203ENST00000589520 SETD1BQ9UPS6 1966 aaKnown RBP13.55□□□□□ -0.24
VPS25-203ENST00000589520 MYH16Q9H6N6 1097 aa13.55□□□□□ -0.24
VPS25-203ENST00000589520 POLKQ9UBT6 870 aa13.55□□□□□ -0.24
VPS25-203ENST00000589520 TTC21AQ8NDW8 1320 aa13.55□□□□□ -0.24
VPS25-203ENST00000589520 PRR36Q9H6K5 1346 aa13.55□□□□□ -0.24
VPS25-203ENST00000589520 MAPK8IP3Q9UPT6 1336 aa13.55□□□□□ -0.24
VPS25-203ENST00000589520 KIF20BQ96Q89 1820 aa13.55□□□□□ -0.24
VPS25-203ENST00000589520 ANKARQ7Z5J8 1434 aa13.55□□□□□ -0.24
VPS25-203ENST00000589520 COL3A1P02461 1466 aaPredicted RBP13.55□□□□□ -0.24
VPS25-203ENST00000589520 PLEKHF1Q96S99 279 aa13.54□□□□□ -0.24
VPS25-203ENST00000589520 IL16Q14005 1332 aa13.54□□□□□ -0.24
VPS25-203ENST00000589520 TTC21BQ7Z4L5 1316 aa13.54□□□□□ -0.24
VPS25-203ENST00000589520 UBAP1LF5GYI3 381 aa13.53□□□□□ -0.24
VPS25-203ENST00000589520 U2SURPO15042 1029 aaKnown RBP13.53□□□□□ -0.24
VPS25-203ENST00000589520 ACEP12821 1306 aa13.53□□□□□ -0.24
VPS25-203ENST00000589520 B4GALNT3Q6L9W6 998 aa13.52□□□□□ -0.25
VPS25-203ENST00000589520 TSHZ2Q9NRE2 1034 aa13.52□□□□□ -0.25
VPS25-203ENST00000589520 DMRT2Q9Y5R5 561 aa13.52□□□□□ -0.25
VPS25-203ENST00000589520 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.52□□□□□ -0.25
VPS25-203ENST00000589520 MON2Q7Z3U7 1717 aa13.51□□□□□ -0.25
VPS25-203ENST00000589520 ZNF142P52746 1687 aaPredicted RBP13.51□□□□□ -0.25
VPS25-203ENST00000589520 CDK12Q9NYV4 1490 aaPredicted RBP13.51□□□□□ -0.25
VPS25-203ENST00000589520 NME9Q86XW9 330 aa13.51□□□□□ -0.25
VPS25-203ENST00000589520 USP6P35125 1406 aa13.5□□□□□ -0.25
VPS25-203ENST00000589520 TMPOP42166 694 aaKnown RBP13.5□□□□□ -0.25
VPS25-203ENST00000589520 CALD1Q05682 793 aaKnown RBP13.5□□□□□ -0.25
VPS25-203ENST00000589520 AAMPQ13685 434 aa13.5□□□□□ -0.25
VPS25-203ENST00000589520 AKAP12Q02952 1782 aa13.5□□□□□ -0.25
VPS25-203ENST00000589520 XRN1Q8IZH2 1706 aaKnown RBP13.5□□□□□ -0.25
VPS25-203ENST00000589520 NGDNQ8NEJ9 315 aaKnown RBP13.49□□□□□ -0.25
VPS25-203ENST00000589520 SSH2Q76I76 1423 aa13.48□□□□□ -0.25
VPS25-203ENST00000589520 USP31Q70CQ4 1352 aa13.48□□□□□ -0.25
VPS25-203ENST00000589520 ITSN1Q15811 1721 aa13.48□□□□□ -0.25
VPS25-203ENST00000589520 TOPAZ1Q8N9V7 1692 aa13.48□□□□□ -0.25
VPS25-203ENST00000589520 KCNA6P17658 529 aa13.48□□□□□ -0.25
VPS25-203ENST00000589520 HSPA1LP34931 641 aa13.48□□□□□ -0.25
VPS25-203ENST00000589520 IL13P35225 146 aa13.48□□□□□ -0.25
VPS25-203ENST00000589520 PDE3AQ14432 1141 aa13.48□□□□□ -0.25
VPS25-203ENST00000589520 NEUROD2Q15784 382 aa13.48□□□□□ -0.25
VPS25-203ENST00000589520 EXOC6Q8TAG9 804 aa13.48□□□□□ -0.25
VPS25-203ENST00000589520 SPINK5Q9NQ38 1064 aaPredicted RBP13.48□□□□□ -0.25
VPS25-203ENST00000589520 LMOD3Q0VAK6 560 aa13.47□□□□□ -0.25
VPS25-203ENST00000589520 RSPH6AQ9H0K4 717 aa13.47□□□□□ -0.25
VPS25-203ENST00000589520 NCKAP5LQ9HCH0 1330 aa13.46□□□□□ -0.25
VPS25-203ENST00000589520 PPM1GO15355 546 aaPredicted RBP13.46□□□□□ -0.25
VPS25-203ENST00000589520 MS4A1P11836 297 aa13.46□□□□□ -0.25
VPS25-203ENST00000589520 RIPK4P57078 832 aa13.46□□□□□ -0.25
VPS25-203ENST00000589520 ZNF428Q96B54 188 aa13.46□□□□□ -0.25
VPS25-203ENST00000589520 OVOS2A0A0J9YW53 1432 aa13.46□□□□□ -0.26
VPS25-203ENST00000589520 NPHP4O75161 1426 aaPredicted RBP13.46□□□□□ -0.26
VPS25-203ENST00000589520 OVOS2Q6IE36 1432 aa13.46□□□□□ -0.26
VPS25-203ENST00000589520 KIF24Q5T7B8 1368 aa13.45□□□□□ -0.26
VPS25-203ENST00000589520 RRP7AQ9Y3A4 280 aaKnown RBP13.45□□□□□ -0.26
VPS25-203ENST00000589520 EMILIN1Q9Y6C2 1016 aa13.45□□□□□ -0.26
VPS25-203ENST00000589520 CRBNQ96SW2 442 aa13.44□□□□□ -0.26
VPS25-203ENST00000589520 TRIM35Q9UPQ4 493 aa13.44□□□□□ -0.26
VPS25-203ENST00000589520 PLIN1O60240 522 aa13.43□□□□□ -0.26
VPS25-203ENST00000589520 PRKAR2BP31323 418 aa13.43□□□□□ -0.26
VPS25-203ENST00000589520 NFE2L2Q16236 605 aa13.43□□□□□ -0.26
VPS25-203ENST00000589520 NRKQ7Z2Y5 1582 aa13.42□□□□□ -0.26
VPS25-203ENST00000589520 RARSP54136 660 aaKnown RBP13.42□□□□□ -0.26
VPS25-203ENST00000589520 CHD2O14647 1828 aaKnown RBP13.41□□□□□ -0.26
VPS25-203ENST00000589520 LRRC7Q96NW7 1537 aa13.41□□□□□ -0.26
VPS25-203ENST00000589520 PMFBP1Q8TBY8 1022 aa13.41□□□□□ -0.26
VPS25-203ENST00000589520 ZRANB1Q9UGI0 708 aa13.41□□□□□ -0.26
VPS25-203ENST00000589520 MAP2P11137 1827 aaKnown RBP13.41□□□□□ -0.26
VPS25-203ENST00000589520 ADGRL3Q9HAR2 1447 aa13.4□□□□□ -0.26
VPS25-203ENST00000589520 NUTM2FA1L443 756 aa13.4□□□□□ -0.26
VPS25-203ENST00000589520 TCERG1O14776 1098 aaKnown RBP13.4□□□□□ -0.26
VPS25-203ENST00000589520 CANXP27824 592 aaKnown RBP13.4□□□□□ -0.26
VPS25-203ENST00000589520 RRS1Q15050 365 aaKnown RBP13.4□□□□□ -0.26
VPS25-203ENST00000589520 PHF8Q9UPP1 1060 aa13.4□□□□□ -0.26
VPS25-203ENST00000589520 BCAR3O75815 825 aa13.39□□□□□ -0.27
VPS25-203ENST00000589520 GNAI1P63096 354 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms