RNA–Protein interactions for RNA: ENST00000588907.2

SCAMP4-211, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 4

Gene SCAMP4, Length 547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-211ENST00000588907 KRT28Q7Z3Y7 464 aa23.22■■□□□ 1.31
SCAMP4-211ENST00000588907 CARD14Q9BXL6 1004 aa23.22■■□□□ 1.31
SCAMP4-211ENST00000588907 PER1O15534 1290 aaPredicted RBP23.21■■□□□ 1.31
SCAMP4-211ENST00000588907 SOS2Q07890 1332 aaPredicted RBP23.21■■□□□ 1.31
SCAMP4-211ENST00000588907 SCAF1Q9H7N4 1312 aaKnown RBP23.21■■□□□ 1.31
SCAMP4-211ENST00000588907 TRPM3Q9HCF6 1732 aaPredicted RBP23.21■■□□□ 1.31
SCAMP4-211ENST00000588907 TTC21BQ7Z4L5 1316 aa23.2■■□□□ 1.3
SCAMP4-211ENST00000588907 KIF20BQ96Q89 1820 aa23.19■■□□□ 1.3
SCAMP4-211ENST00000588907 ARHGEF10O15013 1369 aa23.18■■□□□ 1.3
SCAMP4-211ENST00000588907 TNS3Q68CZ2 1445 aa23.17■■□□□ 1.3
SCAMP4-211ENST00000588907 PHLPP1O60346 1717 aa23.16■■□□□ 1.3
SCAMP4-211ENST00000588907 PAK3O75914 559 aaPredicted RBP23.16■■□□□ 1.3
SCAMP4-211ENST00000588907 ALS2Q96Q42 1657 aa23.16■■□□□ 1.3
SCAMP4-211ENST00000588907 AMER1Q5JTC6 1135 aaPredicted RBP23.15■■□□□ 1.3
SCAMP4-211ENST00000588907 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.15■■□□□ 1.3
SCAMP4-211ENST00000588907 USP54Q70EL1 1684 aa23.15■■□□□ 1.3
SCAMP4-211ENST00000588907 ANKRD26Q9UPS8 1709 aa23.14■■□□□ 1.3
SCAMP4-211ENST00000588907 PIK3C2AO00443 1686 aa23.14■■□□□ 1.29
SCAMP4-211ENST00000588907 LRRC59Q96AG4 307 aaKnown RBP23.14■■□□□ 1.29
SCAMP4-211ENST00000588907 USP31Q70CQ4 1352 aa23.14■■□□□ 1.29
SCAMP4-211ENST00000588907 SPATA31A3Q5VYP0 1347 aa23.13■■□□□ 1.29
SCAMP4-211ENST00000588907 COL16A1Q07092 1604 aaPredicted RBP23.13■■□□□ 1.29
SCAMP4-211ENST00000588907 XPCQ01831 940 aaPredicted RBP23.13■■□□□ 1.29
SCAMP4-211ENST00000588907 ABTB2Q8N961 1025 aa23.13■■□□□ 1.29
SCAMP4-211ENST00000588907 FYB1O15117 783 aa23.12■■□□□ 1.29
SCAMP4-211ENST00000588907 DDX17Q92841 729 aaKnown RBP23.12■■□□□ 1.29
SCAMP4-211ENST00000588907 OVOS2A0A0J9YW53 1432 aa23.1■■□□□ 1.29
SCAMP4-211ENST00000588907 OVOS2Q6IE36 1432 aa23.1■■□□□ 1.29
SCAMP4-211ENST00000588907 DIEXFQ68CQ4 756 aaKnown RBP23.1■■□□□ 1.29
SCAMP4-211ENST00000588907 NLRP13Q86W25 1043 aa23.1■■□□□ 1.29
SCAMP4-211ENST00000588907 COG3Q96JB2 828 aa23.1■■□□□ 1.29
SCAMP4-211ENST00000588907 MED1Q15648 1581 aaPredicted RBP23.1■■□□□ 1.29
SCAMP4-211ENST00000588907 NME9Q86XW9 330 aa23.09■■□□□ 1.29
SCAMP4-211ENST00000588907 ANP32CO43423 234 aa23.07■■□□□ 1.28
SCAMP4-211ENST00000588907 NLRP6P59044 892 aa23.07■■□□□ 1.28
SCAMP4-211ENST00000588907 RALBP1Q15311 655 aa23.07■■□□□ 1.28
SCAMP4-211ENST00000588907 CC2D1BQ5T0F9 858 aaKnown RBP23.06■■□□□ 1.28
SCAMP4-211ENST00000588907 LMOD2Q6P5Q4 547 aa23.06■■□□□ 1.28
SCAMP4-211ENST00000588907 GGNBP2Q9H3C7 697 aa23.06■■□□□ 1.28
SCAMP4-211ENST00000588907 COL22A1Q8NFW1 1626 aaPredicted RBP23.05■■□□□ 1.28
SCAMP4-211ENST00000588907 MORC1Q86VD1 984 aa23.05■■□□□ 1.28
SCAMP4-211ENST00000588907 FBXO41Q8TF61 875 aa23.05■■□□□ 1.28
SCAMP4-211ENST00000588907 USP19O94966 1318 aa23.05■■□□□ 1.28
SCAMP4-211ENST00000588907 PARD3Q8TEW0 1356 aa23.04■■□□□ 1.28
SCAMP4-211ENST00000588907 KCNH5Q8NCM2 988 aa23.04■■□□□ 1.28
SCAMP4-211ENST00000588907 SLIT3O75094 1523 aa23.03■■□□□ 1.28
SCAMP4-211ENST00000588907 SHPRHQ149N8 1683 aa23.03■■□□□ 1.28
SCAMP4-211ENST00000588907 MARF1Q9Y4F3 1742 aaKnown RBP23.02■■□□□ 1.28
SCAMP4-211ENST00000588907 PNPLA6Q8IY17 1366 aa23.01■■□□□ 1.27
SCAMP4-211ENST00000588907 JCADQ9P266 1359 aa23.01■■□□□ 1.27
SCAMP4-211ENST00000588907 PRKRIP1Q9H875 184 aaPredicted RBP23.01■■□□□ 1.27
SCAMP4-211ENST00000588907 AATKQ6ZMQ8 1374 aa23.01■■□□□ 1.27
SCAMP4-211ENST00000588907 PHRF1Q9P1Y6 1649 aaKnown RBP23■■□□□ 1.27
SCAMP4-211ENST00000588907 CRYBG1Q9Y4K1 1723 aa22.99■■□□□ 1.27
SCAMP4-211ENST00000588907 HSPA1LP34931 641 aa22.97■■□□□ 1.27
SCAMP4-211ENST00000588907 NUTM2GQ5VZR2 741 aa22.97■■□□□ 1.27
SCAMP4-211ENST00000588907 ZRANB1Q9UGI0 708 aa22.97■■□□□ 1.27
SCAMP4-211ENST00000588907 ABCA3Q99758 1704 aa22.96■■□□□ 1.27
SCAMP4-211ENST00000588907 MYBBP1AQ9BQG0 1328 aaKnown RBP22.96■■□□□ 1.27
SCAMP4-211ENST00000588907 KIF24Q5T7B8 1368 aa22.96■■□□□ 1.27
SCAMP4-211ENST00000588907 NFAT5O94916 1531 aa22.95■■□□□ 1.26
SCAMP4-211ENST00000588907 GCP02774 474 aa22.95■■□□□ 1.26
SCAMP4-211ENST00000588907 SPATA31A6Q5VVP1 1343 aa22.94■■□□□ 1.26
SCAMP4-211ENST00000588907 HAP1P54257 671 aaPredicted RBP22.94■■□□□ 1.26
SCAMP4-211ENST00000588907 CNGB1Q14028 1251 aaPredicted RBP22.93■■□□□ 1.26
SCAMP4-211ENST00000588907 ABCC6O95255 1503 aa22.92■■□□□ 1.26
SCAMP4-211ENST00000588907 SMG6Q86US8 1419 aaKnown RBP22.92■■□□□ 1.26
SCAMP4-211ENST00000588907 CPDO75976 1380 aa22.92■■□□□ 1.26
SCAMP4-211ENST00000588907 RTL1A6NKG5 1358 aa22.91■■□□□ 1.26
SCAMP4-211ENST00000588907 PPP2R1AP30153 589 aa22.9■■□□□ 1.26
SCAMP4-211ENST00000588907 TNNT2P45379 298 aaPredicted RBP22.9■■□□□ 1.26
SCAMP4-211ENST00000588907 MAP2P11137 1827 aaKnown RBP22.89■■□□□ 1.26
SCAMP4-211ENST00000588907 LTN1O94822 1766 aa22.89■■□□□ 1.25
SCAMP4-211ENST00000588907 CDK12Q9NYV4 1490 aaPredicted RBP22.88■■□□□ 1.25
SCAMP4-211ENST00000588907 SOX12O15370 315 aa22.87■■□□□ 1.25
SCAMP4-211ENST00000588907 ARHGEF25Q86VW2 580 aa22.87■■□□□ 1.25
SCAMP4-211ENST00000588907 CABLES1Q8TDN4 633 aa22.87■■□□□ 1.25
SCAMP4-211ENST00000588907 FLT4P35916 1363 aa22.87■■□□□ 1.25
SCAMP4-211ENST00000588907 CFAP53Q96M91 514 aa22.86■■□□□ 1.25
SCAMP4-211ENST00000588907 POLKQ9UBT6 870 aa22.86■■□□□ 1.25
SCAMP4-211ENST00000588907 MAP3K19Q56UN5 1328 aa22.85■■□□□ 1.25
SCAMP4-211ENST00000588907 AMPHP49418 695 aa22.84■■□□□ 1.25
SCAMP4-211ENST00000588907 RRS1Q15050 365 aaKnown RBP22.84■■□□□ 1.25
SCAMP4-211ENST00000588907 BLMP54132 1417 aaPredicted RBP22.83■■□□□ 1.25
SCAMP4-211ENST00000588907 CCER2I3L3R5 266 aa22.83■■□□□ 1.25
SCAMP4-211ENST00000588907 PLEKHG5O94827 1062 aa22.83■■□□□ 1.25
SCAMP4-211ENST00000588907 MTHFSP49914 203 aa22.83■■□□□ 1.25
SCAMP4-211ENST00000588907 PRDM11Q9NQV5 511 aa22.83■■□□□ 1.25
SCAMP4-211ENST00000588907 INSRP06213 1382 aa22.83■■□□□ 1.25
SCAMP4-211ENST00000588907 KIAA0232Q92628 1395 aa22.83■■□□□ 1.25
SCAMP4-211ENST00000588907 COL14A1Q05707 1796 aaKnown RBP22.82■■□□□ 1.24
SCAMP4-211ENST00000588907 ZC3H6P61129 1189 aaKnown RBP22.82■■□□□ 1.24
SCAMP4-211ENST00000588907 IP6K1Q92551 441 aa22.81■■□□□ 1.24
SCAMP4-211ENST00000588907 EMILIN1Q9Y6C2 1016 aa22.81■■□□□ 1.24
SCAMP4-211ENST00000588907 PPM1GO15355 546 aaPredicted RBP22.8■■□□□ 1.24
SCAMP4-211ENST00000588907 HOXC9P31274 260 aa22.79■■□□□ 1.24
SCAMP4-211ENST00000588907 PEAK1Q9H792 1746 aa22.79■■□□□ 1.24
SCAMP4-211ENST00000588907 NUTM2BA6NNL0 878 aaPredicted RBP22.78■■□□□ 1.24
SCAMP4-211ENST00000588907 NUTM2EB1AL46 878 aaPredicted RBP22.78■■□□□ 1.24
SCAMP4-211ENST00000588907 FBLN1P23142 703 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms