RNA–Protein interactions for RNA: ENST00000588410.1

TPM4-208, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-208ENST00000588410 TRPM3Q9HCF6 1732 aaPredicted RBP27.78■■■□□ 2.04
TPM4-208ENST00000588410 FAM83GA6ND36 823 aa27.78■■■□□ 2.04
TPM4-208ENST00000588410 CABP1Q9NZU7 370 aa27.77■■■□□ 2.04
TPM4-208ENST00000588410 QRICH2Q9H0J4 1663 aa27.77■■■□□ 2.04
TPM4-208ENST00000588410 NUTM2GQ5VZR2 741 aa27.76■■■□□ 2.03
TPM4-208ENST00000588410 UPF1Q92900 1129 aaKnown RBP eCLIP27.76■■■□□ 2.03
TPM4-208ENST00000588410 CCDC9Q9Y3X0 531 aaKnown RBP27.75■■■□□ 2.03
TPM4-208ENST00000588410 ABTB2Q8N961 1025 aa27.74■■■□□ 2.03
TPM4-208ENST00000588410 MARF1Q9Y4F3 1742 aaKnown RBP27.74■■■□□ 2.03
TPM4-208ENST00000588410 TOPAZ1Q8N9V7 1692 aa27.73■■■□□ 2.03
TPM4-208ENST00000588410 ALS2Q96Q42 1657 aa27.73■■■□□ 2.03
TPM4-208ENST00000588410 RALGAPBQ86X10 1494 aa27.73■■■□□ 2.03
TPM4-208ENST00000588410 VPS72Q15906 364 aa27.73■■■□□ 2.03
TPM4-208ENST00000588410 PCGF6Q9BYE7 350 aa27.73■■■□□ 2.03
TPM4-208ENST00000588410 PRDM11Q9NQV5 511 aa27.72■■■□□ 2.03
TPM4-208ENST00000588410 BTG4Q9NY30 223 aa27.71■■■□□ 2.03
TPM4-208ENST00000588410 BRD4O60885 1362 aaPredicted RBP27.69■■■□□ 2.02
TPM4-208ENST00000588410 NLRP13Q86W25 1043 aa27.68■■■□□ 2.02
TPM4-208ENST00000588410 ABCA3Q99758 1704 aa27.67■■■□□ 2.02
TPM4-208ENST00000588410 ATAD2Q6PL18 1390 aa27.67■■■□□ 2.02
TPM4-208ENST00000588410 SBNO2Q9Y2G9 1366 aa27.66■■■□□ 2.02
TPM4-208ENST00000588410 ZC3H6P61129 1189 aaKnown RBP27.66■■■□□ 2.02
TPM4-208ENST00000588410 ZNF692Q9BU19 519 aaPredicted RBP27.65■■■□□ 2.02
TPM4-208ENST00000588410 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.64■■■□□ 2.02
TPM4-208ENST00000588410 KIAA0232Q92628 1395 aa27.64■■■□□ 2.02
TPM4-208ENST00000588410 USP6P35125 1406 aa27.64■■■□□ 2.02
TPM4-208ENST00000588410 CHRNA2Q15822 529 aa27.62■■■□□ 2.01
TPM4-208ENST00000588410 NLRP6P59044 892 aa27.61■■■□□ 2.01
TPM4-208ENST00000588410 SEPT12Q8IYM1 358 aa27.61■■■□□ 2.01
TPM4-208ENST00000588410 USP19O94966 1318 aa27.61■■■□□ 2.01
TPM4-208ENST00000588410 CLSPNQ9HAW4 1339 aa27.61■■■□□ 2.01
TPM4-208ENST00000588410 PLCH1Q4KWH8 1693 aa27.6■■■□□ 2.01
TPM4-208ENST00000588410 A0A0G2JS52 829 aa27.6■■■□□ 2.01
TPM4-208ENST00000588410 MYT1Q01538 1121 aa27.6■■■□□ 2.01
TPM4-208ENST00000588410 GLI3P10071 1580 aa27.6■■■□□ 2.01
TPM4-208ENST00000588410 NWD2Q9ULI1 1742 aa27.59■■■□□ 2.01
TPM4-208ENST00000588410 COL14A1Q05707 1796 aaKnown RBP27.59■■■□□ 2.01
TPM4-208ENST00000588410 GCP02774 474 aa27.58■■■□□ 2.01
TPM4-208ENST00000588410 TIMELESSQ9UNS1 1208 aa27.58■■■□□ 2.01
TPM4-208ENST00000588410 TMC1Q8TDI8 760 aa27.57■■■□□ 2
TPM4-208ENST00000588410 ST20-MTHFSA0A0A6YYL1 179 aa27.56■■■□□ 2
TPM4-208ENST00000588410 ONECUT3O60422 494 aaPredicted RBP27.56■■■□□ 2
TPM4-208ENST00000588410 SLC24A1O60721 1099 aa27.56■■■□□ 2
TPM4-208ENST00000588410 STRN4Q9NRL3 753 aa27.56■■■□□ 2
TPM4-208ENST00000588410 TTC21BQ7Z4L5 1316 aa27.56■■■□□ 2
TPM4-208ENST00000588410 EVA1CP58658 441 aa27.55■■■□□ 2
TPM4-208ENST00000588410 FAM98CQ17RN3 349 aaKnown RBP27.55■■■□□ 2
TPM4-208ENST00000588410 SPATA31A5Q5VU36 1347 aa27.54■■■□□ 2
TPM4-208ENST00000588410 SSH2Q76I76 1423 aa27.54■■■□□ 2
TPM4-208ENST00000588410 KTN1Q86UP2 1357 aaKnown RBP27.54■■■□□ 2
TPM4-208ENST00000588410 SPATA31A7Q8IWB4 1347 aa27.54■■■□□ 2
TPM4-208ENST00000588410 CRYBG1Q9Y4K1 1723 aa27.54■■■□□ 2
TPM4-208ENST00000588410 CPDO75976 1380 aa27.53■■■□□ 2
TPM4-208ENST00000588410 ZBTB7CA1YPR0 619 aa27.53■■■□□ 2
TPM4-208ENST00000588410 PHRF1Q9P1Y6 1649 aaKnown RBP27.52■■■□□ 2
TPM4-208ENST00000588410 TTC21AQ8NDW8 1320 aa27.52■■■□□ 2
TPM4-208ENST00000588410 HDGFL2Q7Z4V5 671 aaPredicted RBP27.52■■■□□ 2
TPM4-208ENST00000588410 PUS7Q96PZ0 661 aaKnown RBP27.52■■■□□ 2
TPM4-208ENST00000588410 CPSF1Q10570 1443 aaKnown RBP27.51■■□□□ 1.99
TPM4-208ENST00000588410 CCER1Q8TC90 406 aaPredicted RBP27.51■■□□□ 1.99
TPM4-208ENST00000588410 KRT27Q7Z3Y8 459 aa27.5■■□□□ 1.99
TPM4-208ENST00000588410 TESK2Q96S53 571 aa27.5■■□□□ 1.99
TPM4-208ENST00000588410 NRKQ7Z2Y5 1582 aa27.49■■□□□ 1.99
TPM4-208ENST00000588410 CCDC125Q86Z20 511 aa27.49■■□□□ 1.99
TPM4-208ENST00000588410 NRAPQ86VF7 1730 aa27.48■■□□□ 1.99
TPM4-208ENST00000588410 SLC12A5Q9H2X9 1139 aa27.48■■□□□ 1.99
TPM4-208ENST00000588410 TERF2IPQ9NYB0 399 aa27.48■■□□□ 1.99
TPM4-208ENST00000588410 SPATA31A1Q5TZJ5 1347 aa27.47■■□□□ 1.99
TPM4-208ENST00000588410 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.47■■□□□ 1.99
TPM4-208ENST00000588410 KCNH5Q8NCM2 988 aa27.47■■□□□ 1.99
TPM4-208ENST00000588410 USP47Q96K76 1375 aa27.47■■□□□ 1.99
TPM4-208ENST00000588410 USP35Q9P2H5 1018 aa27.45■■□□□ 1.98
TPM4-208ENST00000588410 SOX12O15370 315 aa27.44■■□□□ 1.98
TPM4-208ENST00000588410 TMF1P82094 1093 aa27.43■■□□□ 1.98
TPM4-208ENST00000588410 LARP1Q6PKG0 1096 aaKnown RBP27.43■■□□□ 1.98
TPM4-208ENST00000588410 SLIT3O75094 1523 aa27.42■■□□□ 1.98
TPM4-208ENST00000588410 AATKQ6ZMQ8 1374 aa27.41■■□□□ 1.98
TPM4-208ENST00000588410 SF3B2Q13435 895 aaKnown RBP27.41■■□□□ 1.98
TPM4-208ENST00000588410 CAMTA1Q9Y6Y1 1673 aa27.4■■□□□ 1.98
TPM4-208ENST00000588410 NINLQ9Y2I6 1382 aa27.4■■□□□ 1.98
TPM4-208ENST00000588410 PIK3C2AO00443 1686 aa27.4■■□□□ 1.98
TPM4-208ENST00000588410 CD163L1Q9NR16 1453 aa27.39■■□□□ 1.98
TPM4-208ENST00000588410 NME9Q86XW9 330 aa27.38■■□□□ 1.97
TPM4-208ENST00000588410 TCP11L2Q8N4U5 519 aa27.38■■□□□ 1.97
TPM4-208ENST00000588410 BLMP54132 1417 aaPredicted RBP27.38■■□□□ 1.97
TPM4-208ENST00000588410 A0A1W2PP64 1363 aa27.37■■□□□ 1.97
TPM4-208ENST00000588410 EDC4Q6P2E9 1401 aaKnown RBP27.37■■□□□ 1.97
TPM4-208ENST00000588410 BARGINQ6ZT62 677 aa27.37■■□□□ 1.97
TPM4-208ENST00000588410 ARHGEF25Q86VW2 580 aa27.37■■□□□ 1.97
TPM4-208ENST00000588410 ZRANB1Q9UGI0 708 aa27.37■■□□□ 1.97
TPM4-208ENST00000588410 AKAP12Q02952 1782 aa27.37■■□□□ 1.97
TPM4-208ENST00000588410 CDCA8Q53HL2 280 aa27.36■■□□□ 1.97
TPM4-208ENST00000588410 USP31Q70CQ4 1352 aa27.35■■□□□ 1.97
TPM4-208ENST00000588410 THRAP3Q9Y2W1 955 aaKnown RBP27.35■■□□□ 1.97
TPM4-208ENST00000588410 COL5A2P05997 1499 aaPredicted RBP27.35■■□□□ 1.97
TPM4-208ENST00000588410 LMO7Q8WWI1 1683 aa27.33■■□□□ 1.97
TPM4-208ENST00000588410 TOM1L2Q6ZVM7 507 aa27.33■■□□□ 1.97
TPM4-208ENST00000588410 AXIN2Q9Y2T1 843 aa27.32■■□□□ 1.96
TPM4-208ENST00000588410 CRB1P82279 1406 aa27.32■■□□□ 1.96
TPM4-208ENST00000588410 CSB-PGBD3P0DP91 1061 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms