RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ATP7BP35670 1465 aa29.55■■■□□ 2.32
SHMT1-209ENST00000582653 ABCA3Q99758 1704 aa29.54■■■□□ 2.32
SHMT1-209ENST00000582653 EP400Q96L91 3159 aa29.54■■■□□ 2.32
SHMT1-209ENST00000582653 PLEKHG3A1L390 1219 aa29.52■■■□□ 2.32
SHMT1-209ENST00000582653 PLCH1Q4KWH8 1693 aa29.51■■■□□ 2.31
SHMT1-209ENST00000582653 NBPF8Q3BBV2 869 aa29.51■■■□□ 2.31
SHMT1-209ENST00000582653 ACEP12821 1306 aa29.49■■■□□ 2.31
SHMT1-209ENST00000582653 POLR3AO14802 1390 aaPredicted RBP29.48■■■□□ 2.31
SHMT1-209ENST00000582653 ITSN1Q15811 1721 aa29.48■■■□□ 2.31
SHMT1-209ENST00000582653 KRT27Q7Z3Y8 459 aa29.46■■■□□ 2.31
SHMT1-209ENST00000582653 CENPJQ9HC77 1338 aaPredicted RBP29.45■■■□□ 2.31
SHMT1-209ENST00000582653 PRDM11Q9NQV5 511 aa29.45■■■□□ 2.31
SHMT1-209ENST00000582653 ZRANB1Q9UGI0 708 aa29.45■■■□□ 2.31
SHMT1-209ENST00000582653 BLMP54132 1417 aaPredicted RBP29.45■■■□□ 2.3
SHMT1-209ENST00000582653 COL14A1Q05707 1796 aaKnown RBP29.44■■■□□ 2.3
SHMT1-209ENST00000582653 FAM98CQ17RN3 349 aaKnown RBP29.43■■■□□ 2.3
SHMT1-209ENST00000582653 BRWD3Q6RI45 1802 aa29.43■■■□□ 2.3
SHMT1-209ENST00000582653 SRPK2P78362 688 aaKnown RBP29.42■■■□□ 2.3
SHMT1-209ENST00000582653 SPATA31A5Q5VU36 1347 aa29.41■■■□□ 2.3
SHMT1-209ENST00000582653 SPATA31A7Q8IWB4 1347 aa29.41■■■□□ 2.3
SHMT1-209ENST00000582653 NUTM2GQ5VZR2 741 aa29.4■■■□□ 2.3
SHMT1-209ENST00000582653 NRAPQ86VF7 1730 aa29.4■■■□□ 2.3
SHMT1-209ENST00000582653 SF3B2Q13435 895 aaKnown RBP29.39■■■□□ 2.3
SHMT1-209ENST00000582653 ABTB2Q8N961 1025 aa29.39■■■□□ 2.3
SHMT1-209ENST00000582653 CABP2Q9NPB3 220 aa29.39■■■□□ 2.3
SHMT1-209ENST00000582653 CRYBG1Q9Y4K1 1723 aa29.39■■■□□ 2.3
SHMT1-209ENST00000582653 KIAA0232Q92628 1395 aa29.39■■■□□ 2.29
SHMT1-209ENST00000582653 A0A0G2JS52 829 aa29.38■■■□□ 2.29
SHMT1-209ENST00000582653 MYT1Q01538 1121 aa29.38■■■□□ 2.29
SHMT1-209ENST00000582653 ZC3H6P61129 1189 aaKnown RBP29.37■■■□□ 2.29
SHMT1-209ENST00000582653 TOPAZ1Q8N9V7 1692 aa29.37■■■□□ 2.29
SHMT1-209ENST00000582653 TRPM1Q7Z4N2 1603 aa29.35■■■□□ 2.29
SHMT1-209ENST00000582653 CHRNA2Q15822 529 aa29.35■■■□□ 2.29
SHMT1-209ENST00000582653 DEFB132Q7Z7B7 95 aa29.35■■■□□ 2.29
SHMT1-209ENST00000582653 PPIP5K1Q6PFW1 1433 aa29.34■■■□□ 2.29
SHMT1-209ENST00000582653 QRICH2Q9H0J4 1663 aa29.34■■■□□ 2.29
SHMT1-209ENST00000582653 NLRP13Q86W25 1043 aa29.33■■■□□ 2.29
SHMT1-209ENST00000582653 ROCK2O75116 1388 aaKnown RBP29.32■■■□□ 2.28
SHMT1-209ENST00000582653 CABP1Q9NZU7 370 aa29.32■■■□□ 2.28
SHMT1-209ENST00000582653 BRD4O60885 1362 aaPredicted RBP29.31■■■□□ 2.28
SHMT1-209ENST00000582653 SPATA31A1Q5TZJ5 1347 aa29.31■■■□□ 2.28
SHMT1-209ENST00000582653 STRN4Q9NRL3 753 aa29.3■■■□□ 2.28
SHMT1-209ENST00000582653 EVA1CP58658 441 aa29.29■■■□□ 2.28
SHMT1-209ENST00000582653 EVC2Q86UK5 1308 aa29.28■■■□□ 2.28
SHMT1-209ENST00000582653 PHRF1Q9P1Y6 1649 aaKnown RBP29.27■■■□□ 2.28
SHMT1-209ENST00000582653 USP19O94966 1318 aa29.27■■■□□ 2.28
SHMT1-209ENST00000582653 GCP02774 474 aa29.27■■■□□ 2.28
SHMT1-209ENST00000582653 SRCAPQ6ZRS2 3230 aa29.27■■■□□ 2.28
SHMT1-209ENST00000582653 CPDO75976 1380 aa29.26■■■□□ 2.28
SHMT1-209ENST00000582653 TRIM26Q12899 539 aaPredicted RBP29.26■■■□□ 2.27
SHMT1-209ENST00000582653 BAG6P46379 1132 aa29.24■■■□□ 2.27
SHMT1-209ENST00000582653 FAM182BQ5T319 152 aa29.23■■■□□ 2.27
SHMT1-209ENST00000582653 NLRP6P59044 892 aa29.21■■■□□ 2.27
SHMT1-209ENST00000582653 BARGINQ6ZT62 677 aa29.21■■■□□ 2.27
SHMT1-209ENST00000582653 ZNF692Q9BU19 519 aaPredicted RBP29.21■■■□□ 2.27
SHMT1-209ENST00000582653 USP6P35125 1406 aa29.2■■■□□ 2.27
SHMT1-209ENST00000582653 USP35Q9P2H5 1018 aa29.2■■■□□ 2.26
SHMT1-209ENST00000582653 THSD7AQ9UPZ6 1657 aa29.19■■■□□ 2.26
SHMT1-209ENST00000582653 CAMTA1Q9Y6Y1 1673 aa29.19■■■□□ 2.26
SHMT1-209ENST00000582653 LARP1Q6PKG0 1096 aaKnown RBP29.19■■■□□ 2.26
SHMT1-209ENST00000582653 SSH2Q76I76 1423 aa29.19■■■□□ 2.26
SHMT1-209ENST00000582653 NRKQ7Z2Y5 1582 aa29.18■■■□□ 2.26
SHMT1-209ENST00000582653 TONSLQ96HA7 1378 aa29.18■■■□□ 2.26
SHMT1-209ENST00000582653 FAM196AQ6ZSG2 479 aa29.17■■■□□ 2.26
SHMT1-209ENST00000582653 CARD11Q9BXL7 1154 aa29.16■■■□□ 2.26
SHMT1-209ENST00000582653 TCP11L2Q8N4U5 519 aa29.15■■■□□ 2.26
SHMT1-209ENST00000582653 THRAP3Q9Y2W1 955 aaKnown RBP29.15■■■□□ 2.26
SHMT1-209ENST00000582653 EN1Q05925 392 aaPredicted RBP29.14■■■□□ 2.26
SHMT1-209ENST00000582653 PDE3BQ13370 1112 aa29.13■■■□□ 2.25
SHMT1-209ENST00000582653 LMO7Q8WWI1 1683 aa29.12■■■□□ 2.25
SHMT1-209ENST00000582653 TTC21BQ7Z4L5 1316 aa29.11■■■□□ 2.25
SHMT1-209ENST00000582653 AATKQ6ZMQ8 1374 aa29.1■■■□□ 2.25
SHMT1-209ENST00000582653 TRIM37O94972 964 aa29.08■■■□□ 2.25
SHMT1-209ENST00000582653 ZBTB7CA1YPR0 619 aa29.07■■■□□ 2.24
SHMT1-209ENST00000582653 SLIT3O75094 1523 aa29.07■■■□□ 2.24
SHMT1-209ENST00000582653 COL5A2P05997 1499 aaPredicted RBP29.07■■■□□ 2.24
SHMT1-209ENST00000582653 RGPD1P0DJD0 1748 aa29.07■■■□□ 2.24
SHMT1-209ENST00000582653 DISP2A7MBM2 1401 aa29.06■■■□□ 2.24
SHMT1-209ENST00000582653 SBNO2Q9Y2G9 1366 aa29.06■■■□□ 2.24
SHMT1-209ENST00000582653 TTC21AQ8NDW8 1320 aa29.06■■■□□ 2.24
SHMT1-209ENST00000582653 KCNH5Q8NCM2 988 aa29.06■■■□□ 2.24
SHMT1-209ENST00000582653 CPSF1Q10570 1443 aaKnown RBP29.05■■■□□ 2.24
SHMT1-209ENST00000582653 CRB1P82279 1406 aa29.04■■■□□ 2.24
SHMT1-209ENST00000582653 ARHGEF25Q86VW2 580 aa29.04■■■□□ 2.24
SHMT1-209ENST00000582653 CAMKK2Q96RR4 588 aa29.04■■■□□ 2.24
SHMT1-209ENST00000582653 EZH2Q15910 746 aaKnown RBP29.03■■■□□ 2.24
SHMT1-209ENST00000582653 AXIN2Q9Y2T1 843 aa29.03■■■□□ 2.24
SHMT1-209ENST00000582653 APBA3O96018 575 aa29.02■■■□□ 2.24
SHMT1-209ENST00000582653 PIK3C2AO00443 1686 aa29.02■■■□□ 2.24
SHMT1-209ENST00000582653 KTN1Q86UP2 1357 aaKnown RBP29.01■■■□□ 2.24
SHMT1-209ENST00000582653 PSDA5PKW4 1024 aaPredicted RBP29.01■■■□□ 2.23
SHMT1-209ENST00000582653 TOM1L2Q6ZVM7 507 aa29■■■□□ 2.23
SHMT1-209ENST00000582653 AKAP12Q02952 1782 aa28.99■■■□□ 2.23
SHMT1-209ENST00000582653 C11orf95C9JLR9 678 aaPredicted RBP28.99■■■□□ 2.23
SHMT1-209ENST00000582653 TNS1Q9HBL0 1735 aaKnown RBP28.97■■■□□ 2.23
SHMT1-209ENST00000582653 WDR17Q8IZU2 1322 aa28.96■■■□□ 2.23
SHMT1-209ENST00000582653 COL18A1P39060 1754 aa28.96■■■□□ 2.23
SHMT1-209ENST00000582653 SOX12O15370 315 aa28.96■■■□□ 2.23
SHMT1-209ENST00000582653 TMC1Q8TDI8 760 aa28.96■■■□□ 2.23
SHMT1-209ENST00000582653 PUS7Q96PZ0 661 aaKnown RBP28.95■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms