RNA–Protein interactions for RNA: ENST00000582308.1

RFFL-210, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 398 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-210ENST00000582308 TTC21BQ7Z4L5 1316 aa13.09□□□□□ -0.31
RFFL-210ENST00000582308 AMER1Q5JTC6 1135 aaPredicted RBP13.08□□□□□ -0.32
RFFL-210ENST00000582308 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.08□□□□□ -0.32
RFFL-210ENST00000582308 BRD4O60885 1362 aaPredicted RBP13.07□□□□□ -0.32
RFFL-210ENST00000582308 AHDC1Q5TGY3 1603 aaPredicted RBP13.07□□□□□ -0.32
RFFL-210ENST00000582308 PIK3C2AO00443 1686 aa13.07□□□□□ -0.32
RFFL-210ENST00000582308 ALS2Q96Q42 1657 aa13.07□□□□□ -0.32
RFFL-210ENST00000582308 ANKRD26Q9UPS8 1709 aa13.07□□□□□ -0.32
RFFL-210ENST00000582308 SOS2Q07890 1332 aaPredicted RBP13.07□□□□□ -0.32
RFFL-210ENST00000582308 PHLPP1O60346 1717 aa13.06□□□□□ -0.32
RFFL-210ENST00000582308 MARF1Q9Y4F3 1742 aaKnown RBP13.06□□□□□ -0.32
RFFL-210ENST00000582308 FYB1O15117 783 aa13.06□□□□□ -0.32
RFFL-210ENST00000582308 DIEXFQ68CQ4 756 aaKnown RBP13.06□□□□□ -0.32
RFFL-210ENST00000582308 NME9Q86XW9 330 aa13.06□□□□□ -0.32
RFFL-210ENST00000582308 CGNL1Q0VF96 1302 aa13.06□□□□□ -0.32
RFFL-210ENST00000582308 SCAF1Q9H7N4 1312 aaKnown RBP13.06□□□□□ -0.32
RFFL-210ENST00000582308 PAK3O75914 559 aaPredicted RBP13.05□□□□□ -0.32
RFFL-210ENST00000582308 ZRANB1Q9UGI0 708 aa13.05□□□□□ -0.32
RFFL-210ENST00000582308 TTC21AQ8NDW8 1320 aa13.05□□□□□ -0.32
RFFL-210ENST00000582308 SBNO1A3KN83 1393 aa13.05□□□□□ -0.32
RFFL-210ENST00000582308 NPC1L1Q9UHC9 1359 aa13.05□□□□□ -0.32
RFFL-210ENST00000582308 CC2D1BQ5T0F9 858 aaKnown RBP13.04□□□□□ -0.32
RFFL-210ENST00000582308 USP54Q70EL1 1684 aa13.03□□□□□ -0.32
RFFL-210ENST00000582308 CNGB1Q14028 1251 aaPredicted RBP13.03□□□□□ -0.32
RFFL-210ENST00000582308 GGNBP2Q9H3C7 697 aa13.03□□□□□ -0.32
RFFL-210ENST00000582308 SPATA31A3Q5VYP0 1347 aa13.03□□□□□ -0.32
RFFL-210ENST00000582308 COL16A1Q07092 1604 aaPredicted RBP13.02□□□□□ -0.32
RFFL-210ENST00000582308 ABTB2Q8N961 1025 aa13.02□□□□□ -0.33
RFFL-210ENST00000582308 NSD2O96028 1365 aa13.02□□□□□ -0.33
RFFL-210ENST00000582308 TNS3Q68CZ2 1445 aa13.02□□□□□ -0.33
RFFL-210ENST00000582308 NUTM2GQ5VZR2 741 aa13.01□□□□□ -0.33
RFFL-210ENST00000582308 USP31Q70CQ4 1352 aa13.01□□□□□ -0.33
RFFL-210ENST00000582308 MAP2P11137 1827 aaKnown RBP13.01□□□□□ -0.33
RFFL-210ENST00000582308 OVOS2A0A0J9YW53 1432 aa13□□□□□ -0.33
RFFL-210ENST00000582308 OVOS2Q6IE36 1432 aa13□□□□□ -0.33
RFFL-210ENST00000582308 NLRP6P59044 892 aa13□□□□□ -0.33
RFFL-210ENST00000582308 LMOD2Q6P5Q4 547 aa13□□□□□ -0.33
RFFL-210ENST00000582308 CRYBG1Q9Y4K1 1723 aa12.99□□□□□ -0.33
RFFL-210ENST00000582308 PARD3Q8TEW0 1356 aa12.99□□□□□ -0.33
RFFL-210ENST00000582308 MORC1Q86VD1 984 aa12.99□□□□□ -0.33
RFFL-210ENST00000582308 LRRC59Q96AG4 307 aaKnown RBP12.99□□□□□ -0.33
RFFL-210ENST00000582308 COG3Q96JB2 828 aa12.99□□□□□ -0.33
RFFL-210ENST00000582308 PRKRIP1Q9H875 184 aaPredicted RBP12.99□□□□□ -0.33
RFFL-210ENST00000582308 ARHGEF10O15013 1369 aa12.98□□□□□ -0.33
RFFL-210ENST00000582308 NLRP13Q86W25 1043 aa12.98□□□□□ -0.33
RFFL-210ENST00000582308 MED1Q15648 1581 aaPredicted RBP12.98□□□□□ -0.33
RFFL-210ENST00000582308 ANP32CO43423 234 aa12.97□□□□□ -0.33
RFFL-210ENST00000582308 RALBP1Q15311 655 aa12.97□□□□□ -0.33
RFFL-210ENST00000582308 ABCA3Q99758 1704 aa12.96□□□□□ -0.33
RFFL-210ENST00000582308 PHRF1Q9P1Y6 1649 aaKnown RBP12.96□□□□□ -0.33
RFFL-210ENST00000582308 USP19O94966 1318 aa12.96□□□□□ -0.33
RFFL-210ENST00000582308 PLEKHG5O94827 1062 aa12.96□□□□□ -0.33
RFFL-210ENST00000582308 FBLN1P23142 703 aa12.96□□□□□ -0.33
RFFL-210ENST00000582308 HSPA1LP34931 641 aa12.96□□□□□ -0.33
RFFL-210ENST00000582308 TNNT2P45379 298 aaPredicted RBP12.96□□□□□ -0.33
RFFL-210ENST00000582308 SLIT3O75094 1523 aa12.96□□□□□ -0.33
RFFL-210ENST00000582308 PNPLA6Q8IY17 1366 aa12.95□□□□□ -0.34
RFFL-210ENST00000582308 COL22A1Q8NFW1 1626 aaPredicted RBP12.95□□□□□ -0.34
RFFL-210ENST00000582308 CABLES1Q8TDN4 633 aa12.95□□□□□ -0.34
RFFL-210ENST00000582308 SHPRHQ149N8 1683 aa12.95□□□□□ -0.34
RFFL-210ENST00000582308 LTN1O94822 1766 aa12.94□□□□□ -0.34
RFFL-210ENST00000582308 NFAT5O94916 1531 aa12.94□□□□□ -0.34
RFFL-210ENST00000582308 PPP2R1AP30153 589 aa12.94□□□□□ -0.34
RFFL-210ENST00000582308 MIER1Q8N108 512 aa12.94□□□□□ -0.34
RFFL-210ENST00000582308 FBXO41Q8TF61 875 aa12.94□□□□□ -0.34
RFFL-210ENST00000582308 SOX12O15370 315 aa12.93□□□□□ -0.34
RFFL-210ENST00000582308 GCP02774 474 aa12.93□□□□□ -0.34
RFFL-210ENST00000582308 AATKQ6ZMQ8 1374 aa12.93□□□□□ -0.34
RFFL-210ENST00000582308 MYBBP1AQ9BQG0 1328 aaKnown RBP12.91□□□□□ -0.34
RFFL-210ENST00000582308 PEAK1Q9H792 1746 aa12.91□□□□□ -0.34
RFFL-210ENST00000582308 RRS1Q15050 365 aaKnown RBP12.91□□□□□ -0.34
RFFL-210ENST00000582308 KCNH5Q8NCM2 988 aa12.91□□□□□ -0.34
RFFL-210ENST00000582308 POLKQ9UBT6 870 aa12.91□□□□□ -0.34
RFFL-210ENST00000582308 RGPD5Q99666 1765 aa12.91□□□□□ -0.34
RFFL-210ENST00000582308 JCADQ9P266 1359 aa12.91□□□□□ -0.34
RFFL-210ENST00000582308 MTHFSP49914 203 aa12.9□□□□□ -0.34
RFFL-210ENST00000582308 EMILIN1Q9Y6C2 1016 aa12.9□□□□□ -0.34
RFFL-210ENST00000582308 MAP3K19Q56UN5 1328 aa12.89□□□□□ -0.35
RFFL-210ENST00000582308 COL18A1P39060 1754 aa12.89□□□□□ -0.35
RFFL-210ENST00000582308 ZC3H6P61129 1189 aaKnown RBP12.89□□□□□ -0.35
RFFL-210ENST00000582308 CCDC184Q52MB2 194 aa12.89□□□□□ -0.35
RFFL-210ENST00000582308 ARHGEF25Q86VW2 580 aa12.89□□□□□ -0.35
RFFL-210ENST00000582308 SMG6Q86US8 1419 aaKnown RBP12.88□□□□□ -0.35
RFFL-210ENST00000582308 CPDO75976 1380 aa12.87□□□□□ -0.35
RFFL-210ENST00000582308 KIAA0232Q92628 1395 aa12.87□□□□□ -0.35
RFFL-210ENST00000582308 PPM1GO15355 546 aaPredicted RBP12.87□□□□□ -0.35
RFFL-210ENST00000582308 HAP1P54257 671 aaPredicted RBP12.87□□□□□ -0.35
RFFL-210ENST00000582308 NUTM2BA6NNL0 878 aaPredicted RBP12.86□□□□□ -0.35
RFFL-210ENST00000582308 NUTM2EB1AL46 878 aaPredicted RBP12.86□□□□□ -0.35
RFFL-210ENST00000582308 NUTM2AQ8IVF1 878 aaPredicted RBP12.86□□□□□ -0.35
RFFL-210ENST00000582308 CDK12Q9NYV4 1490 aaPredicted RBP12.85□□□□□ -0.35
RFFL-210ENST00000582308 INSRP06213 1382 aa12.85□□□□□ -0.35
RFFL-210ENST00000582308 ZBTB7CA1YPR0 619 aa12.85□□□□□ -0.35
RFFL-210ENST00000582308 HOXC9P31274 260 aa12.85□□□□□ -0.35
RFFL-210ENST00000582308 AMPHP49418 695 aa12.85□□□□□ -0.35
RFFL-210ENST00000582308 CHRNA2Q15822 529 aa12.85□□□□□ -0.35
RFFL-210ENST00000582308 IP6K1Q92551 441 aa12.85□□□□□ -0.35
RFFL-210ENST00000582308 SPATA31A6Q5VVP1 1343 aa12.85□□□□□ -0.35
RFFL-210ENST00000582308 COL3A1P02461 1466 aaPredicted RBP12.85□□□□□ -0.35
RFFL-210ENST00000582308 FLT4P35916 1363 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms