RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 TTLL12Q14166 644 aaPredicted RBP12.22□□□□□ -0.45
SMCHD1-207ENST00000581711 SPDYE5A6NIY4 337 aa12.21□□□□□ -0.45
SMCHD1-207ENST00000581711 MRPL14Q6P1L8 145 aaKnown RBP12.21□□□□□ -0.45
SMCHD1-207ENST00000581711 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.21□□□□□ -0.45
SMCHD1-207ENST00000581711 TIMP2P16035 220 aa12.19□□□□□ -0.46
SMCHD1-207ENST00000581711 VSIG10Q8N0Z9 540 aa12.19□□□□□ -0.46
SMCHD1-207ENST00000581711 ADH1CP00326 375 aa12.18□□□□□ -0.46
SMCHD1-207ENST00000581711 WDR4P57081 412 aaKnown RBP12.18□□□□□ -0.46
SMCHD1-207ENST00000581711 SCARF1Q14162 830 aa12.18□□□□□ -0.46
SMCHD1-207ENST00000581711 PURBQ96QR8 312 aaKnown RBP12.18□□□□□ -0.46
SMCHD1-207ENST00000581711 AMHR2Q16671 573 aa12.17□□□□□ -0.46
SMCHD1-207ENST00000581711 GIGYF2Q6Y7W6 1299 aaKnown RBP12.17□□□□□ -0.46
SMCHD1-207ENST00000581711 FAM174AQ8TBP5 190 aa12.16□□□□□ -0.46
SMCHD1-207ENST00000581711 KLF16Q9BXK1 252 aaPredicted RBP12.16□□□□□ -0.46
SMCHD1-207ENST00000581711 CTHP32929 405 aa12.15□□□□□ -0.46
SMCHD1-207ENST00000581711 BEGAINQ9BUH8 593 aa12.15□□□□□ -0.46
SMCHD1-207ENST00000581711 SOBPA7XYQ1 873 aa12.14□□□□□ -0.47
SMCHD1-207ENST00000581711 LYPD8Q6UX82 237 aa12.14□□□□□ -0.47
SMCHD1-207ENST00000581711 GJA5P36382 358 aa12.13□□□□□ -0.47
SMCHD1-207ENST00000581711 BARGINQ6ZT62 677 aa12.13□□□□□ -0.47
SMCHD1-207ENST00000581711 CFAP99D6REC4 459 aa12.12□□□□□ -0.47
SMCHD1-207ENST00000581711 RSBN1LQ6PCB5 846 aaPredicted RBP12.12□□□□□ -0.47
SMCHD1-207ENST00000581711 FOXJ1Q92949 421 aa12.12□□□□□ -0.47
SMCHD1-207ENST00000581711 CDK15Q96Q40 435 aa12.12□□□□□ -0.47
SMCHD1-207ENST00000581711 TBC1D2Q9BYX2 928 aa12.12□□□□□ -0.47
SMCHD1-207ENST00000581711 MAP10Q9P2G4 905 aa12.11□□□□□ -0.47
SMCHD1-207ENST00000581711 ZMYND10O75800 440 aa12.1□□□□□ -0.47
SMCHD1-207ENST00000581711 VSIG8P0DPA2 414 aa12.1□□□□□ -0.47
SMCHD1-207ENST00000581711 ARID5BQ14865 1188 aa12.1□□□□□ -0.47
SMCHD1-207ENST00000581711 PCDHB15Q9Y5E8 787 aa12.1□□□□□ -0.47
SMCHD1-207ENST00000581711 ZIC2O95409 532 aaPredicted RBP12.09□□□□□ -0.47
SMCHD1-207ENST00000581711 F12P00748 615 aaPredicted RBP12.09□□□□□ -0.47
SMCHD1-207ENST00000581711 ZFAND3Q9H8U3 227 aa12.09□□□□□ -0.47
SMCHD1-207ENST00000581711 DIXDC1Q155Q3 683 aa12.08□□□□□ -0.48
SMCHD1-207ENST00000581711 HRCP23327 699 aa12.07□□□□□ -0.48
SMCHD1-207ENST00000581711 ITPKCQ96DU7 683 aa12.07□□□□□ -0.48
SMCHD1-207ENST00000581711 SPTLC1O15269 473 aa12.06□□□□□ -0.48
SMCHD1-207ENST00000581711 NR3C2P08235 984 aa12.06□□□□□ -0.48
SMCHD1-207ENST00000581711 ZBTB3Q9H5J0 574 aa12.06□□□□□ -0.48
SMCHD1-207ENST00000581711 MAN1A2O60476 641 aa12.05□□□□□ -0.48
SMCHD1-207ENST00000581711 NR5A1Q13285 461 aa12.05□□□□□ -0.48
SMCHD1-207ENST00000581711 C4orf48Q5BLP8 95 aa12.05□□□□□ -0.48
SMCHD1-207ENST00000581711 C6orf118Q5T5N4 469 aa12.05□□□□□ -0.48
SMCHD1-207ENST00000581711 PARP9Q8IXQ6 854 aa12.04□□□□□ -0.48
SMCHD1-207ENST00000581711 GRM5P41594 1212 aa12.03□□□□□ -0.48
SMCHD1-207ENST00000581711 AGERQ15109 404 aa12.03□□□□□ -0.48
SMCHD1-207ENST00000581711 ZC3H15Q8WU90 426 aaKnown RBP12.03□□□□□ -0.48
SMCHD1-207ENST00000581711 PRPF38BQ5VTL8 546 aaKnown RBP12.02□□□□□ -0.49
SMCHD1-207ENST00000581711 CABLES1Q8TDN4 633 aa12.02□□□□□ -0.49
SMCHD1-207ENST00000581711 PER1O15534 1290 aaPredicted RBP12.01□□□□□ -0.49
SMCHD1-207ENST00000581711 RIC3Q7Z5B4 369 aa12.01□□□□□ -0.49
SMCHD1-207ENST00000581711 BPHLQ86WA6 291 aaPredicted RBP12.01□□□□□ -0.49
SMCHD1-207ENST00000581711 BMP2P12643 396 aa12□□□□□ -0.49
SMCHD1-207ENST00000581711 PPFIA3O75145 1194 aa11.99□□□□□ -0.49
SMCHD1-207ENST00000581711 UPP2O95045 317 aa11.99□□□□□ -0.49
SMCHD1-207ENST00000581711 CSPP1Q1MSJ5 1256 aa11.99□□□□□ -0.49
SMCHD1-207ENST00000581711 LINC00528Q8N1L1 170 aa11.99□□□□□ -0.49
SMCHD1-207ENST00000581711 MEIOBQ8N635 442 aa11.99□□□□□ -0.49
SMCHD1-207ENST00000581711 TSC1Q92574 1164 aa11.96□□□□□ -0.49
SMCHD1-207ENST00000581711 C1QTNF2Q9BXJ5 285 aa11.96□□□□□ -0.49
SMCHD1-207ENST00000581711 SOS2Q07890 1332 aaPredicted RBP11.95□□□□□ -0.5
SMCHD1-207ENST00000581711 TRIM66O15016 1216 aa11.95□□□□□ -0.5
SMCHD1-207ENST00000581711 FSHRP23945 695 aa11.95□□□□□ -0.5
SMCHD1-207ENST00000581711 DNMT3LQ9UJW3 386 aa11.95□□□□□ -0.5
SMCHD1-207ENST00000581711 SH3RF1Q7Z6J0 888 aa11.94□□□□□ -0.5
SMCHD1-207ENST00000581711 ARMC2Q8NEN0 867 aa11.94□□□□□ -0.5
SMCHD1-207ENST00000581711 QPCTQ16769 361 aa11.93□□□□□ -0.5
SMCHD1-207ENST00000581711 MAP4K5Q9Y4K4 846 aa11.93□□□□□ -0.5
SMCHD1-207ENST00000581711 LIMD1Q9UGP4 676 aa11.92□□□□□ -0.5
SMCHD1-207ENST00000581711 LOC100996750A0A140TA64 210 aa11.91□□□□□ -0.5
SMCHD1-207ENST00000581711 NUTM2BA6NNL0 878 aaPredicted RBP11.91□□□□□ -0.5
SMCHD1-207ENST00000581711 NUTM2EB1AL46 878 aaPredicted RBP11.91□□□□□ -0.5
SMCHD1-207ENST00000581711 NBPF14Q5TI25 921 aa11.91□□□□□ -0.5
SMCHD1-207ENST00000581711 NUTM2DQ5VT03 806 aaPredicted RBP11.91□□□□□ -0.5
SMCHD1-207ENST00000581711 VASH1Q7L8A9 365 aaPredicted RBP11.91□□□□□ -0.5
SMCHD1-207ENST00000581711 NUTM2AQ8IVF1 878 aaPredicted RBP11.91□□□□□ -0.5
SMCHD1-207ENST00000581711 KRTAP4-6Q9BYQ5 205 aa11.91□□□□□ -0.5
SMCHD1-207ENST00000581711 MYSM1Q5VVJ2 828 aa11.9□□□□□ -0.5
SMCHD1-207ENST00000581711 SH3BP5LQ7L8J4 393 aa11.9□□□□□ -0.5
SMCHD1-207ENST00000581711 TRMT44Q8IYL2 757 aaKnown RBP11.9□□□□□ -0.5
SMCHD1-207ENST00000581711 TSEN34Q9BSV6 310 aaKnown RBP11.9□□□□□ -0.5
SMCHD1-207ENST00000581711 KCNMA1Q12791 1236 aa11.89□□□□□ -0.51
SMCHD1-207ENST00000581711 MAGEB6P1A0A0J9YX57 407 aa11.88□□□□□ -0.51
SMCHD1-207ENST00000581711 LILRB3O75022 631 aa11.88□□□□□ -0.51
SMCHD1-207ENST00000581711 TUSC1Q2TAM9 212 aa11.88□□□□□ -0.51
SMCHD1-207ENST00000581711 AK7Q96M32 723 aa11.88□□□□□ -0.51
SMCHD1-207ENST00000581711 EMILIN1Q9Y6C2 1016 aa11.88□□□□□ -0.51
SMCHD1-207ENST00000581711 GSK3AP49840 483 aa11.87□□□□□ -0.51
SMCHD1-207ENST00000581711 CCDC116Q8IYX3 515 aa11.87□□□□□ -0.51
SMCHD1-207ENST00000581711 KRT76Q01546 638 aa11.86□□□□□ -0.51
SMCHD1-207ENST00000581711 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.86□□□□□ -0.51
SMCHD1-207ENST00000581711 HELBQ8NG08 1087 aaPredicted RBP11.86□□□□□ -0.51
SMCHD1-207ENST00000581711 TTLL8A6PVC2 850 aa11.85□□□□□ -0.51
SMCHD1-207ENST00000581711 GPR161Q8N6U8 529 aaKnown RBP11.85□□□□□ -0.51
SMCHD1-207ENST00000581711 CARD14Q9BXL6 1004 aa11.85□□□□□ -0.51
SMCHD1-207ENST00000581711 PTSQ03393 145 aa11.84□□□□□ -0.51
SMCHD1-207ENST00000581711 RTL5Q5HYW3 569 aaPredicted RBP11.83□□□□□ -0.52
SMCHD1-207ENST00000581711 CNTNAP3BQ96NU0 1288 aa11.83□□□□□ -0.52
SMCHD1-207ENST00000581711 CNTNAP3Q9BZ76 1288 aa11.83□□□□□ -0.52
SMCHD1-207ENST00000581711 KCTD17Q8N5Z5 321 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms