RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 RGPD8O14715 1765 aaPredicted RBP20.65■□□□□ 0.9
SS18-215ENST00000580642 USP31Q70CQ4 1352 aa20.65■□□□□ 0.9
SS18-215ENST00000580642 SLAIN2Q9P270 581 aa20.65■□□□□ 0.9
SS18-215ENST00000580642 IQSEC2Q5JU85 1478 aa20.64■□□□□ 0.89
SS18-215ENST00000580642 PSME1Q06323 249 aa20.64■□□□□ 0.89
SS18-215ENST00000580642 ORAI2Q96SN7 254 aa20.64■□□□□ 0.89
SS18-215ENST00000580642 NPHP3Q7Z494 1330 aa20.63■□□□□ 0.89
SS18-215ENST00000580642 PPP2R1AP30153 589 aa20.63■□□□□ 0.89
SS18-215ENST00000580642 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.62■□□□□ 0.89
SS18-215ENST00000580642 COG3Q96JB2 828 aa20.62■□□□□ 0.89
SS18-215ENST00000580642 ANKRD26Q9UPS8 1709 aa20.61■□□□□ 0.89
SS18-215ENST00000580642 GGNBP2Q9H3C7 697 aa20.61■□□□□ 0.89
SS18-215ENST00000580642 AATKQ6ZMQ8 1374 aa20.6■□□□□ 0.89
SS18-215ENST00000580642 KIF20BQ96Q89 1820 aa20.6■□□□□ 0.89
SS18-215ENST00000580642 MRS2Q9HD23 443 aa20.6■□□□□ 0.89
SS18-215ENST00000580642 SBNO1A3KN83 1393 aa20.59■□□□□ 0.89
SS18-215ENST00000580642 FOXO3O43524 673 aa20.59■□□□□ 0.89
SS18-215ENST00000580642 OVOS2A0A0J9YW53 1432 aa20.59■□□□□ 0.89
SS18-215ENST00000580642 OVOS2Q6IE36 1432 aa20.59■□□□□ 0.89
SS18-215ENST00000580642 CNGB1Q14028 1251 aaPredicted RBP20.58■□□□□ 0.89
SS18-215ENST00000580642 BRINP3Q76B58 766 aa20.58■□□□□ 0.89
SS18-215ENST00000580642 NME9Q86XW9 330 aa20.58■□□□□ 0.89
SS18-215ENST00000580642 KRT28Q7Z3Y7 464 aa20.57■□□□□ 0.88
SS18-215ENST00000580642 USP54Q70EL1 1684 aa20.55■□□□□ 0.88
SS18-215ENST00000580642 INSRP06213 1382 aa20.55■□□□□ 0.88
SS18-215ENST00000580642 ABTB2Q8N961 1025 aa20.54■□□□□ 0.88
SS18-215ENST00000580642 TOM1O60784 492 aa20.53■□□□□ 0.88
SS18-215ENST00000580642 PNISRQ8TF01 805 aaKnown RBP20.53■□□□□ 0.88
SS18-215ENST00000580642 CFAP53Q96M91 514 aa20.53■□□□□ 0.88
SS18-215ENST00000580642 PAK3O75914 559 aaPredicted RBP20.52■□□□□ 0.88
SS18-215ENST00000580642 NLRP6P59044 892 aa20.52■□□□□ 0.88
SS18-215ENST00000580642 SMG6Q86US8 1419 aaKnown RBP20.52■□□□□ 0.87
SS18-215ENST00000580642 SOS2Q07890 1332 aaPredicted RBP20.52■□□□□ 0.87
SS18-215ENST00000580642 PXDNQ92626 1479 aa20.51■□□□□ 0.87
SS18-215ENST00000580642 KIF24Q5T7B8 1368 aa20.51■□□□□ 0.87
SS18-215ENST00000580642 PIK3C2AO00443 1686 aa20.51■□□□□ 0.87
SS18-215ENST00000580642 ARHGEF10O15013 1369 aa20.5■□□□□ 0.87
SS18-215ENST00000580642 MTHFSP49914 203 aa20.5■□□□□ 0.87
SS18-215ENST00000580642 CCDC184Q52MB2 194 aa20.5■□□□□ 0.87
SS18-215ENST00000580642 KCNH5Q8NCM2 988 aa20.5■□□□□ 0.87
SS18-215ENST00000580642 TRPM3Q9HCF6 1732 aaPredicted RBP20.5■□□□□ 0.87
SS18-215ENST00000580642 PNPLA6Q8IY17 1366 aa20.49■□□□□ 0.87
SS18-215ENST00000580642 TNS3Q68CZ2 1445 aa20.48■□□□□ 0.87
SS18-215ENST00000580642 ZRANB1Q9UGI0 708 aa20.48■□□□□ 0.87
SS18-215ENST00000580642 SPATA31A3Q5VYP0 1347 aa20.48■□□□□ 0.87
SS18-215ENST00000580642 TNNT2P45379 298 aaPredicted RBP20.47■□□□□ 0.87
SS18-215ENST00000580642 POLKQ9UBT6 870 aa20.47■□□□□ 0.87
SS18-215ENST00000580642 USP19O94966 1318 aa20.47■□□□□ 0.87
SS18-215ENST00000580642 CDK12Q9NYV4 1490 aaPredicted RBP20.45■□□□□ 0.86
SS18-215ENST00000580642 NHSL1Q5SYE7 1610 aa20.45■□□□□ 0.86
SS18-215ENST00000580642 CERKQ8TCT0 537 aa20.44■□□□□ 0.86
SS18-215ENST00000580642 AHDC1Q5TGY3 1603 aaPredicted RBP20.44■□□□□ 0.86
SS18-215ENST00000580642 ALS2Q96Q42 1657 aa20.44■□□□□ 0.86
SS18-215ENST00000580642 SLIT3O75094 1523 aa20.43■□□□□ 0.86
SS18-215ENST00000580642 NUDCQ9Y266 331 aa20.43■□□□□ 0.86
SS18-215ENST00000580642 XPCQ01831 940 aaPredicted RBP20.42■□□□□ 0.86
SS18-215ENST00000580642 WDR43Q15061 677 aaKnown RBP eCLIP20.42■□□□□ 0.86
SS18-215ENST00000580642 RTL1A6NKG5 1358 aa20.41■□□□□ 0.86
SS18-215ENST00000580642 MED1Q15648 1581 aaPredicted RBP20.41■□□□□ 0.86
SS18-215ENST00000580642 FAM9BQ8IZU0 186 aa20.4■□□□□ 0.86
SS18-215ENST00000580642 LRRC59Q96AG4 307 aaKnown RBP20.4■□□□□ 0.86
SS18-215ENST00000580642 ROBO1Q9Y6N7 1651 aa20.39■□□□□ 0.86
SS18-215ENST00000580642 FLT4P35916 1363 aa20.39■□□□□ 0.85
SS18-215ENST00000580642 DIAPH1O60610 1272 aaKnown RBP20.39■□□□□ 0.85
SS18-215ENST00000580642 GCP02774 474 aa20.39■□□□□ 0.85
SS18-215ENST00000580642 MARF1Q9Y4F3 1742 aaKnown RBP20.39■□□□□ 0.85
SS18-215ENST00000580642 COL3A1P02461 1466 aaPredicted RBP20.38■□□□□ 0.85
SS18-215ENST00000580642 DDX17Q92841 729 aaKnown RBP20.38■□□□□ 0.85
SS18-215ENST00000580642 NFAT5O94916 1531 aa20.37■□□□□ 0.85
SS18-215ENST00000580642 MAP3K19Q56UN5 1328 aa20.37■□□□□ 0.85
SS18-215ENST00000580642 UBAP1LF5GYI3 381 aa20.37■□□□□ 0.85
SS18-215ENST00000580642 LMOD2Q6P5Q4 547 aa20.37■□□□□ 0.85
SS18-215ENST00000580642 EMILIN1Q9Y6C2 1016 aa20.37■□□□□ 0.85
SS18-215ENST00000580642 RRS1Q15050 365 aaKnown RBP20.36■□□□□ 0.85
SS18-215ENST00000580642 NUTM2GQ5VZR2 741 aa20.36■□□□□ 0.85
SS18-215ENST00000580642 PNNQ9H307 717 aaKnown RBP20.36■□□□□ 0.85
SS18-215ENST00000580642 PHRF1Q9P1Y6 1649 aaKnown RBP20.35■□□□□ 0.85
SS18-215ENST00000580642 MAP2P11137 1827 aaKnown RBP20.35■□□□□ 0.85
SS18-215ENST00000580642 ARHGEF25Q86VW2 580 aa20.35■□□□□ 0.85
SS18-215ENST00000580642 ABCC6O95255 1503 aa20.34■□□□□ 0.85
SS18-215ENST00000580642 AMPHP49418 695 aa20.34■□□□□ 0.85
SS18-215ENST00000580642 NGEFQ8N5V2 710 aa20.34■□□□□ 0.85
SS18-215ENST00000580642 ADAMTS8Q9UP79 889 aa20.34■□□□□ 0.85
SS18-215ENST00000580642 BLMP54132 1417 aaPredicted RBP20.34■□□□□ 0.85
SS18-215ENST00000580642 CPDO75976 1380 aa20.34■□□□□ 0.85
SS18-215ENST00000580642 PPM1GO15355 546 aaPredicted RBP20.33■□□□□ 0.85
SS18-215ENST00000580642 IP6K1Q92551 441 aa20.33■□□□□ 0.85
SS18-215ENST00000580642 FBLN1P23142 703 aa20.32■□□□□ 0.84
SS18-215ENST00000580642 IL13P35225 146 aa20.32■□□□□ 0.84
SS18-215ENST00000580642 HOXC9P31274 260 aa20.31■□□□□ 0.84
SS18-215ENST00000580642 NCBP3Q53F19 620 aaKnown RBP20.31■□□□□ 0.84
SS18-215ENST00000580642 SHPRHQ149N8 1683 aa20.3■□□□□ 0.84
SS18-215ENST00000580642 SOX12O15370 315 aa20.29■□□□□ 0.84
SS18-215ENST00000580642 FCHSD2O94868 740 aa20.29■□□□□ 0.84
SS18-215ENST00000580642 U2AF1L5P0DN76 240 aaPredicted RBP20.28■□□□□ 0.84
SS18-215ENST00000580642 U2AF1Q01081 240 aaKnown RBP eCLIP20.28■□□□□ 0.842e-6■■■■□ 21.7
SS18-215ENST00000580642 HSP90AB2PQ58FF8 381 aa20.28■□□□□ 0.84
SS18-215ENST00000580642 PIP4K2BP78356 416 aa20.27■□□□□ 0.84
SS18-215ENST00000580642 EIF4A2Q14240 407 aaKnown RBP20.27■□□□□ 0.84
SS18-215ENST00000580642 PEAK1Q9H792 1746 aa20.27■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms