RNA–Protein interactions for RNA: ENST00000576613.5

CTDNEP1-212, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3

Gene CTDNEP1, Length 606 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-212ENST00000576613 MINK1Q8N4C8 1332 aaPredicted RBP17.16■□□□□ 0.34
CTDNEP1-212ENST00000576613 ITSN1Q15811 1721 aa17.16■□□□□ 0.34
CTDNEP1-212ENST00000576613 WASLO00401 505 aaPredicted RBP17.14■□□□□ 0.33
CTDNEP1-212ENST00000576613 NGDNQ8NEJ9 315 aaKnown RBP17.14■□□□□ 0.33
CTDNEP1-212ENST00000576613 PRR36Q9H6K5 1346 aa17.14■□□□□ 0.33
CTDNEP1-212ENST00000576613 PAK3O75914 559 aaPredicted RBP17.13■□□□□ 0.33
CTDNEP1-212ENST00000576613 PRDM11Q9NQV5 511 aa17.13■□□□□ 0.33
CTDNEP1-212ENST00000576613 SPATA31A5Q5VU36 1347 aa17.13■□□□□ 0.33
CTDNEP1-212ENST00000576613 SPATA31A7Q8IWB4 1347 aa17.13■□□□□ 0.33
CTDNEP1-212ENST00000576613 THSD7AQ9UPZ6 1657 aa17.13■□□□□ 0.33
CTDNEP1-212ENST00000576613 RAB3GAP2Q9H2M9 1393 aa17.13■□□□□ 0.33
CTDNEP1-212ENST00000576613 PSDA5PKW4 1024 aaPredicted RBP17.12■□□□□ 0.33
CTDNEP1-212ENST00000576613 STAC3Q96MF2 364 aa17.11■□□□□ 0.33
CTDNEP1-212ENST00000576613 ARHGEF28Q8N1W1 1705 aaKnown RBP17.1■□□□□ 0.33
CTDNEP1-212ENST00000576613 TNS1Q9HBL0 1735 aaKnown RBP17.1■□□□□ 0.33
CTDNEP1-212ENST00000576613 HRCP23327 699 aa17.1■□□□□ 0.33
CTDNEP1-212ENST00000576613 DCAF11Q8TEB1 546 aa17.1■□□□□ 0.33
CTDNEP1-212ENST00000576613 KDM2AQ9Y2K7 1162 aa17.1■□□□□ 0.33
CTDNEP1-212ENST00000576613 DISP2A7MBM2 1401 aa17.1■□□□□ 0.33
CTDNEP1-212ENST00000576613 PHRF1Q9P1Y6 1649 aaKnown RBP17.1■□□□□ 0.33
CTDNEP1-212ENST00000576613 EN1Q05925 392 aaPredicted RBP17.09■□□□□ 0.33
CTDNEP1-212ENST00000576613 ATP7BP35670 1465 aa17.09■□□□□ 0.33
CTDNEP1-212ENST00000576613 FAM182BQ5T319 152 aa17.08■□□□□ 0.32
CTDNEP1-212ENST00000576613 KIAA0232Q92628 1395 aa17.07■□□□□ 0.32
CTDNEP1-212ENST00000576613 SPATA31A1Q5TZJ5 1347 aa17.06■□□□□ 0.32
CTDNEP1-212ENST00000576613 NUDT16Q96DE0 195 aaKnown RBP17.05■□□□□ 0.32
CTDNEP1-212ENST00000576613 R3HDM1Q15032 1099 aaKnown RBP17.04■□□□□ 0.32
CTDNEP1-212ENST00000576613 FAM196AQ6ZSG2 479 aa17.04■□□□□ 0.32
CTDNEP1-212ENST00000576613 STRN4Q9NRL3 753 aa17.04■□□□□ 0.32
CTDNEP1-212ENST00000576613 TOPAZ1Q8N9V7 1692 aa17.04■□□□□ 0.32
CTDNEP1-212ENST00000576613 CHRNA2Q15822 529 aa17.03■□□□□ 0.32
CTDNEP1-212ENST00000576613 PARD3Q8TEW0 1356 aa17.02■□□□□ 0.32
CTDNEP1-212ENST00000576613 POLR3AO14802 1390 aaPredicted RBP17.02■□□□□ 0.31
CTDNEP1-212ENST00000576613 TRIM37O94972 964 aa17.01■□□□□ 0.31
CTDNEP1-212ENST00000576613 ZC3H6P61129 1189 aaKnown RBP17.01■□□□□ 0.31
CTDNEP1-212ENST00000576613 EZH2Q15910 746 aaKnown RBP17.01■□□□□ 0.31
CTDNEP1-212ENST00000576613 EVA1CP58658 441 aa17■□□□□ 0.31
CTDNEP1-212ENST00000576613 SSH2Q76I76 1423 aa17■□□□□ 0.31
CTDNEP1-212ENST00000576613 NRKQ7Z2Y5 1582 aa17■□□□□ 0.31
CTDNEP1-212ENST00000576613 CDK19Q9BWU1 502 aa17■□□□□ 0.31
CTDNEP1-212ENST00000576613 ACEP12821 1306 aa16.99■□□□□ 0.31
CTDNEP1-212ENST00000576613 KIAA1210Q9ULL0 1709 aa16.99■□□□□ 0.31
CTDNEP1-212ENST00000576613 PDE3BQ13370 1112 aa16.99■□□□□ 0.31
CTDNEP1-212ENST00000576613 NUTM2GQ5VZR2 741 aa16.99■□□□□ 0.31
CTDNEP1-212ENST00000576613 CAMKK2Q96RR4 588 aa16.99■□□□□ 0.31
CTDNEP1-212ENST00000576613 USP35Q9P2H5 1018 aa16.99■□□□□ 0.31
CTDNEP1-212ENST00000576613 CCDC61Q9Y6R9 512 aa16.99■□□□□ 0.31
CTDNEP1-212ENST00000576613 RREB1Q92766 1687 aa16.98■□□□□ 0.31
CTDNEP1-212ENST00000576613 APBA3O96018 575 aa16.98■□□□□ 0.31
CTDNEP1-212ENST00000576613 BARGINQ6ZT62 677 aa16.98■□□□□ 0.31
CTDNEP1-212ENST00000576613 NBPF8Q3BBV2 869 aa16.97■□□□□ 0.31
CTDNEP1-212ENST00000576613 ABTB2Q8N961 1025 aa16.97■□□□□ 0.31
CTDNEP1-212ENST00000576613 CPDO75976 1380 aa16.97■□□□□ 0.31
CTDNEP1-212ENST00000576613 LMO7Q8WWI1 1683 aa16.97■□□□□ 0.31
CTDNEP1-212ENST00000576613 PLEKHG3A1L390 1219 aa16.96■□□□□ 0.31
CTDNEP1-212ENST00000576613 CAMTA1Q9Y6Y1 1673 aa16.96■□□□□ 0.31
CTDNEP1-212ENST00000576613 NUP188Q5SRE5 1749 aa16.96■□□□□ 0.3
CTDNEP1-212ENST00000576613 LARP1Q6PKG0 1096 aaKnown RBP16.94■□□□□ 0.3
CTDNEP1-212ENST00000576613 TCP11L2Q8N4U5 519 aa16.94■□□□□ 0.3
CTDNEP1-212ENST00000576613 THRAP3Q9Y2W1 955 aaKnown RBP16.94■□□□□ 0.3
CTDNEP1-212ENST00000576613 USP19O94966 1318 aa16.94■□□□□ 0.3
CTDNEP1-212ENST00000576613 PARP4Q9UKK3 1724 aaKnown RBP16.93■□□□□ 0.3
CTDNEP1-212ENST00000576613 NBPF14Q5TI25 921 aa16.93■□□□□ 0.3
CTDNEP1-212ENST00000576613 NLRP13Q86W25 1043 aa16.93■□□□□ 0.3
CTDNEP1-212ENST00000576613 C11orf95C9JLR9 678 aaPredicted RBP16.92■□□□□ 0.3
CTDNEP1-212ENST00000576613 PPIP5K1Q6PFW1 1433 aa16.92■□□□□ 0.3
CTDNEP1-212ENST00000576613 BRD4O60885 1362 aaPredicted RBP16.91■□□□□ 0.3
CTDNEP1-212ENST00000576613 SRPK2P78362 688 aaKnown RBP16.91■□□□□ 0.3
CTDNEP1-212ENST00000576613 COL5A2P05997 1499 aaPredicted RBP16.91■□□□□ 0.3
CTDNEP1-212ENST00000576613 GCP02774 474 aa16.9■□□□□ 0.3
CTDNEP1-212ENST00000576613 CRB1P82279 1406 aa16.88■□□□□ 0.29
CTDNEP1-212ENST00000576613 QRICH2Q9H0J4 1663 aa16.88■□□□□ 0.29
CTDNEP1-212ENST00000576613 RGPD3A6NKT7 1758 aaPredicted RBP16.88■□□□□ 0.29
CTDNEP1-212ENST00000576613 RGPD4Q7Z3J3 1758 aa16.88■□□□□ 0.29
CTDNEP1-212ENST00000576613 CENPJQ9HC77 1338 aaPredicted RBP16.88■□□□□ 0.29
CTDNEP1-212ENST00000576613 OVOS2A0A0G2JMS6 1433 aa16.87■□□□□ 0.29
CTDNEP1-212ENST00000576613 OVOS2A0A0J9YW53 1432 aa16.87■□□□□ 0.29
CTDNEP1-212ENST00000576613 OVOS2Q6IE36 1432 aa16.87■□□□□ 0.29
CTDNEP1-212ENST00000576613 NBPF1Q3BBV0 1214 aa16.86■□□□□ 0.29
CTDNEP1-212ENST00000576613 LRRC37A3O60309 1634 aa16.85■□□□□ 0.29
CTDNEP1-212ENST00000576613 PEAK1Q9H792 1746 aa16.85■□□□□ 0.29
CTDNEP1-212ENST00000576613 SPON1Q9HCB6 807 aa16.85■□□□□ 0.29
CTDNEP1-212ENST00000576613 CABP2Q9NPB3 220 aa16.85■□□□□ 0.29
CTDNEP1-212ENST00000576613 PPP1R1BQ9UD71 204 aaPredicted RBP16.85■□□□□ 0.29
CTDNEP1-212ENST00000576613 AATKQ6ZMQ8 1374 aa16.85■□□□□ 0.29
CTDNEP1-212ENST00000576613 USP6P35125 1406 aa16.85■□□□□ 0.29
CTDNEP1-212ENST00000576613 SLIT3O75094 1523 aa16.85■□□□□ 0.29
CTDNEP1-212ENST00000576613 ZBTB7CA1YPR0 619 aa16.84■□□□□ 0.29
CTDNEP1-212ENST00000576613 NLRP6P59044 892 aa16.84■□□□□ 0.29
CTDNEP1-212ENST00000576613 SBF2Q86WG5 1849 aa16.84■□□□□ 0.29
CTDNEP1-212ENST00000576613 WNK3Q9BYP7 1800 aa16.83■□□□□ 0.28
CTDNEP1-212ENST00000576613 DCAF8L1A6NGE4 600 aa16.82■□□□□ 0.28
CTDNEP1-212ENST00000576613 KCNQ2O43526 872 aa16.82■□□□□ 0.28
CTDNEP1-212ENST00000576613 DDB1Q16531 1140 aa16.82■□□□□ 0.28
CTDNEP1-212ENST00000576613 TOM1L2Q6ZVM7 507 aa16.82■□□□□ 0.28
CTDNEP1-212ENST00000576613 PIK3C2AO00443 1686 aa16.81■□□□□ 0.28
CTDNEP1-212ENST00000576613 NINLQ9Y2I6 1382 aa16.81■□□□□ 0.28
CTDNEP1-212ENST00000576613 PLSCR1O15162 318 aa16.81■□□□□ 0.28
CTDNEP1-212ENST00000576613 YY1P25490 414 aa16.81■□□□□ 0.28
CTDNEP1-212ENST00000576613 CABP1Q9NZU7 370 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms