RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	GCC1	Q96CN9	775 aa		13.94	□□□□□ -0.18
CLN3-238	ENST00000569430	MAP7D2	Q96T17	732 aa		13.94	□□□□□ -0.18
CLN3-238	ENST00000569430	TRAPPC8	Q9Y2L5	1435 aa		13.94	□□□□□ -0.18
CLN3-238	ENST00000569430	ZRSR1	Q15695	479 aa	Known RBP	13.93	□□□□□ -0.18
CLN3-238	ENST00000569430	ITSN2	Q9NZM3	1697 aa		13.93	□□□□□ -0.18
CLN3-238	ENST00000569430	BAG4	O95429	457 aa	Known RBP	13.93	□□□□□ -0.18
CLN3-238	ENST00000569430	NECTIN2	Q92692	538 aa		13.93	□□□□□ -0.18
CLN3-238	ENST00000569430	ADGRL2	O95490	1459 aa		13.93	□□□□□ -0.18
CLN3-238	ENST00000569430	CDC42BPA	Q5VT25	1732 aa		13.93	□□□□□ -0.18
CLN3-238	ENST00000569430	RBM27	Q9P2N5	1060 aa	Known RBP	13.93	□□□□□ -0.18
CLN3-238	ENST00000569430	TBC1D9	Q6ZT07	1266 aa		13.92	□□□□□ -0.18
CLN3-238	ENST00000569430	CARD14	Q9BXL6	1004 aa		13.92	□□□□□ -0.18
CLN3-238	ENST00000569430	KDM5C	P41229	1560 aa		13.92	□□□□□ -0.18
CLN3-238	ENST00000569430	PLA2R1	Q13018	1463 aa		13.92	□□□□□ -0.18
CLN3-238	ENST00000569430	UHRF1BP1	Q6BDS2	1440 aa		13.92	□□□□□ -0.18
CLN3-238	ENST00000569430	ADGRF5	Q8IZF2	1346 aa		13.91	□□□□□ -0.18
CLN3-238	ENST00000569430	SCAPER	Q9BY12	1400 aa		13.91	□□□□□ -0.18
CLN3-238	ENST00000569430	GPRASP1	Q5JY77	1395 aa		13.91	□□□□□ -0.18
CLN3-238	ENST00000569430	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.91	□□□□□ -0.18
CLN3-238	ENST00000569430	GNAI1	P63096	354 aa		13.91	□□□□□ -0.18
CLN3-238	ENST00000569430	STK31	Q9BXU1	1019 aa		13.91	□□□□□ -0.18
CLN3-238	ENST00000569430	A2M	P01023	1474 aa		13.91	□□□□□ -0.18
CLN3-238	ENST00000569430	BLM	P54132	1417 aa	Predicted RBP	13.91	□□□□□ -0.18
CLN3-238	ENST00000569430	ZMYM4	Q5VZL5	1548 aa		13.91	□□□□□ -0.18
CLN3-238	ENST00000569430	TWISTNB	Q3B726	338 aa	Predicted RBP	13.9	□□□□□ -0.18
CLN3-238	ENST00000569430	VGF	O15240	615 aa	Predicted RBP	13.9	□□□□□ -0.18
CLN3-238	ENST00000569430	LMOD3	Q0VAK6	560 aa		13.9	□□□□□ -0.18
CLN3-238	ENST00000569430	ABCA8	O94911	1581 aa		13.9	□□□□□ -0.18
CLN3-238	ENST00000569430	SAMD9L	Q8IVG5	1584 aa		13.9	□□□□□ -0.18
CLN3-238	ENST00000569430	GAS2L2	Q8NHY3	880 aa		13.9	□□□□□ -0.19
CLN3-238	ENST00000569430	CCDC27	Q2M243	656 aa		13.89	□□□□□ -0.19
CLN3-238	ENST00000569430	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
CLN3-238	ENST00000569430	ZNF592	Q92610	1267 aa		13.89	□□□□□ -0.19
CLN3-238	ENST00000569430	USP19	O94966	1318 aa		13.89	□□□□□ -0.19
CLN3-238	ENST00000569430	CT47B1	P0C2W7	299 aa	Predicted RBP	13.89	□□□□□ -0.19
CLN3-238	ENST00000569430	TSPY26P	Q9H489	355 aa		13.89	□□□□□ -0.19
CLN3-238	ENST00000569430	ANTXR1	Q9H6X2	564 aa		13.89	□□□□□ -0.19
CLN3-238	ENST00000569430	SMARCA5	O60264	1052 aa	Predicted RBP	13.88	□□□□□ -0.19
CLN3-238	ENST00000569430	MBD3	O95983	291 aa		13.88	□□□□□ -0.19
CLN3-238	ENST00000569430	MLEC	Q14165	292 aa		13.88	□□□□□ -0.19
CLN3-238	ENST00000569430	GAS2L3	Q86XJ1	694 aa		13.88	□□□□□ -0.19
CLN3-238	ENST00000569430	ARHGEF12	Q9NZN5	1544 aa		13.88	□□□□□ -0.19
CLN3-238	ENST00000569430	GOLGA6L6	A8MZA4	724 aa		13.88	□□□□□ -0.19
CLN3-238	ENST00000569430	KLHL40	Q2TBA0	621 aa		13.88	□□□□□ -0.19
CLN3-238	ENST00000569430	TTC37	Q6PGP7	1564 aa		13.87	□□□□□ -0.19
CLN3-238	ENST00000569430	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.87	□□□□□ -0.19
CLN3-238	ENST00000569430	BMP2KL	Q5H9B9	411 aa		13.87	□□□□□ -0.19
CLN3-238	ENST00000569430	SPC24	Q8NBT2	197 aa		13.87	□□□□□ -0.19
CLN3-238	ENST00000569430	GDPD2	Q9HCC8	539 aa		13.87	□□□□□ -0.19
CLN3-238	ENST00000569430	VPS37C	A5D8V6	355 aa	Predicted RBP	13.87	□□□□□ -0.19
CLN3-238	ENST00000569430	HDAC1	Q13547	482 aa	Predicted RBP	13.87	□□□□□ -0.19
CLN3-238	ENST00000569430	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.87	□□□□□ -0.19
CLN3-238	ENST00000569430	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.87	□□□□□ -0.19
CLN3-238	ENST00000569430	FIBP	O43427	364 aa		13.86	□□□□□ -0.19
CLN3-238	ENST00000569430	RAB3GAP1	Q15042	981 aa		13.86	□□□□□ -0.19
CLN3-238	ENST00000569430	MTERF4	Q7Z6M4	381 aa	Known RBP	13.86	□□□□□ -0.19
CLN3-238	ENST00000569430	CWC22	Q9HCG8	908 aa	Known RBP	13.86	□□□□□ -0.19
CLN3-238	ENST00000569430	ADGB	Q8N7X0	1667 aa		13.86	□□□□□ -0.19
CLN3-238	ENST00000569430	ZSCAN23	Q3MJ62	389 aa		13.86	□□□□□ -0.19
CLN3-238	ENST00000569430	FBLN1	P23142	703 aa		13.85	□□□□□ -0.19
CLN3-238	ENST00000569430	NUCB1	Q02818	461 aa		13.85	□□□□□ -0.19
CLN3-238	ENST00000569430	UPF3B	Q9BZI7	483 aa	Known RBP	13.85	□□□□□ -0.19
CLN3-238	ENST00000569430	ASXL1	Q8IXJ9	1541 aa		13.85	□□□□□ -0.19
CLN3-238	ENST00000569430	RAPGEF3	O95398	923 aa		13.85	□□□□□ -0.19
CLN3-238	ENST00000569430	PRIM1	P49642	420 aa	Known RBP	13.85	□□□□□ -0.19
CLN3-238	ENST00000569430	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
CLN3-238	ENST00000569430	ZNF521	Q96K83	1311 aa		13.84	□□□□□ -0.19
CLN3-238	ENST00000569430	SMC5	Q8IY18	1101 aa		13.84	□□□□□ -0.19
CLN3-238	ENST00000569430	SCAF11	Q99590	1463 aa	Known RBP	13.84	□□□□□ -0.19
CLN3-238	ENST00000569430	FSD2	A1L4K1	749 aa		13.84	□□□□□ -0.19
CLN3-238	ENST00000569430	CBX1	P83916	185 aa		13.84	□□□□□ -0.19
CLN3-238	ENST00000569430	ERC2	O15083	957 aa		13.83	□□□□□ -0.2
CLN3-238	ENST00000569430	DCTN1	Q14203	1278 aa		13.83	□□□□□ -0.2
CLN3-238	ENST00000569430	PODXL2	Q9NZ53	605 aa		13.83	□□□□□ -0.2
CLN3-238	ENST00000569430	SNX21	Q969T3	373 aa		13.83	□□□□□ -0.2
CLN3-238	ENST00000569430	ZNF830	Q96NB3	372 aa	Predicted RBP	13.83	□□□□□ -0.2
CLN3-238	ENST00000569430	IFT57	Q9NWB7	429 aa		13.83	□□□□□ -0.2
CLN3-238	ENST00000569430	SMC3	Q9UQE7	1217 aa		13.83	□□□□□ -0.2
CLN3-238	ENST00000569430	FKBP5	Q13451	457 aa	Predicted RBP	13.82	□□□□□ -0.2
CLN3-238	ENST00000569430	COG3	Q96JB2	828 aa		13.82	□□□□□ -0.2
CLN3-238	ENST00000569430	CABP1	Q9NZU7	370 aa		13.82	□□□□□ -0.2
CLN3-238	ENST00000569430	ATP6V1D	Q9Y5K8	247 aa		13.82	□□□□□ -0.2
CLN3-238	ENST00000569430	OFD1	O75665	1012 aa		13.82	□□□□□ -0.2
CLN3-238	ENST00000569430	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.82	□□□□□ -0.2
CLN3-238	ENST00000569430	TRMT2A	Q8IZ69	625 aa	Known RBP	13.82	□□□□□ -0.2
CLN3-238	ENST00000569430	PIK3C2G	O75747	1445 aa		13.81	□□□□□ -0.2
CLN3-238	ENST00000569430	USP25	Q9UHP3	1055 aa		13.81	□□□□□ -0.2
CLN3-238	ENST00000569430	ZGPAT	Q8N5A5	531 aa	Known RBP	13.81	□□□□□ -0.2
CLN3-238	ENST00000569430	PRAM1	Q96QH2	718 aa		13.81	□□□□□ -0.2
CLN3-238	ENST00000569430	ZBTB40	Q9NUA8	1239 aa		13.81	□□□□□ -0.2
CLN3-238	ENST00000569430	CFAP65	Q6ZU64	1925 aa	Known RBP	13.8	□□□□□ -0.2
CLN3-238	ENST00000569430	HMGN5	P82970	282 aa	Known RBP	13.8	□□□□□ -0.2
CLN3-238	ENST00000569430	LTV1	Q96GA3	475 aa	Predicted RBP	13.8	□□□□□ -0.2
CLN3-238	ENST00000569430	SHANK2	Q9UPX8	1470 aa		13.8	□□□□□ -0.2
CLN3-238	ENST00000569430	EXOC6B	Q9Y2D4	811 aa		13.8	□□□□□ -0.2
CLN3-238	ENST00000569430	CDC42BPB	Q9Y5S2	1711 aa		13.8	□□□□□ -0.2
CLN3-238	ENST00000569430	SASS6	Q6UVJ0	657 aa		13.8	□□□□□ -0.2
CLN3-238	ENST00000569430	KDM5D	Q9BY66	1539 aa		13.79	□□□□□ -0.2
CLN3-238	ENST00000569430	TSHZ3	Q63HK5	1081 aa		13.79	□□□□□ -0.2
CLN3-238	ENST00000569430	LARP6	Q9BRS8	491 aa	Known RBP	13.79	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms