RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 LMOD2Q6P5Q4 547 aa18.26■□□□□ 0.51
CLK3-224ENST00000568605 COL14A1Q05707 1796 aaKnown RBP18.26■□□□□ 0.51
CLK3-224ENST00000568605 USP6P35125 1406 aa18.25■□□□□ 0.51
CLK3-224ENST00000568605 ST20-MTHFSA0A0A6YYL1 179 aa18.25■□□□□ 0.51
CLK3-224ENST00000568605 HAP1P54257 671 aaPredicted RBP18.25■□□□□ 0.51
CLK3-224ENST00000568605 PAK3O75914 559 aaPredicted RBP18.24■□□□□ 0.51
CLK3-224ENST00000568605 NINLQ9Y2I6 1382 aa18.24■□□□□ 0.51
CLK3-224ENST00000568605 KIF20BQ96Q89 1820 aa18.23■□□□□ 0.51
CLK3-224ENST00000568605 NRAPQ86VF7 1730 aa18.23■□□□□ 0.51
CLK3-224ENST00000568605 ADAMTS2O95450 1211 aa18.22■□□□□ 0.51
CLK3-224ENST00000568605 TMF1P82094 1093 aa18.22■□□□□ 0.51
CLK3-224ENST00000568605 ZNF772Q68DY9 489 aaPredicted RBP18.22■□□□□ 0.51
CLK3-224ENST00000568605 PUS7Q96PZ0 661 aaKnown RBP18.22■□□□□ 0.51
CLK3-224ENST00000568605 CABP1Q9NZU7 370 aa18.22■□□□□ 0.51
CLK3-224ENST00000568605 C8orf37Q96NL8 207 aa18.21■□□□□ 0.51
CLK3-224ENST00000568605 TESK2Q96S53 571 aa18.21■□□□□ 0.51
CLK3-224ENST00000568605 CDCA8Q53HL2 280 aa18.2■□□□□ 0.5
CLK3-224ENST00000568605 AFF2P51816 1311 aa18.2■□□□□ 0.5
CLK3-224ENST00000568605 CPSF1Q10570 1443 aaKnown RBP18.19■□□□□ 0.5
CLK3-224ENST00000568605 LTN1O94822 1766 aa18.19■□□□□ 0.5
CLK3-224ENST00000568605 KTN1Q86UP2 1357 aaKnown RBP18.18■□□□□ 0.5
CLK3-224ENST00000568605 NGLY1Q96IV0 654 aa18.18■□□□□ 0.5
CLK3-224ENST00000568605 ZNF692Q9BU19 519 aaPredicted RBP18.18■□□□□ 0.5
CLK3-224ENST00000568605 EIF4G2P78344 907 aaKnown RBP eCLIP18.17■□□□□ 0.5
CLK3-224ENST00000568605 CD163L1Q9NR16 1453 aa18.16■□□□□ 0.5
CLK3-224ENST00000568605 HDGFL2Q7Z4V5 671 aaPredicted RBP18.16■□□□□ 0.5
CLK3-224ENST00000568605 TMC1Q8TDI8 760 aa18.16■□□□□ 0.5
CLK3-224ENST00000568605 SLIT3O75094 1523 aa18.16■□□□□ 0.5
CLK3-224ENST00000568605 SSH2Q76I76 1423 aa18.15■□□□□ 0.5
CLK3-224ENST00000568605 ABTB2Q8N961 1025 aa18.15■□□□□ 0.5
CLK3-224ENST00000568605 TERF2IPQ9NYB0 399 aa18.15■□□□□ 0.5
CLK3-224ENST00000568605 RGS17Q9UGC6 210 aaPredicted RBP18.15■□□□□ 0.5
CLK3-224ENST00000568605 TTC21AQ8NDW8 1320 aa18.15■□□□□ 0.5
CLK3-224ENST00000568605 EDC4Q6P2E9 1401 aaKnown RBP18.15■□□□□ 0.5
CLK3-224ENST00000568605 SLIT2O94813 1529 aa18.14■□□□□ 0.49
CLK3-224ENST00000568605 PLEKHG5O94827 1062 aa18.14■□□□□ 0.49
CLK3-224ENST00000568605 CABLES1Q8TDN4 633 aa18.14■□□□□ 0.49
CLK3-224ENST00000568605 A0A1W2PP64 1363 aa18.14■□□□□ 0.49
CLK3-224ENST00000568605 ANKRD26Q9UPS8 1709 aa18.13■□□□□ 0.49
CLK3-224ENST00000568605 LMO7Q8WWI1 1683 aa18.12■□□□□ 0.49
CLK3-224ENST00000568605 RGPD5Q99666 1765 aa18.12■□□□□ 0.49
CLK3-224ENST00000568605 NLRP13Q86W25 1043 aa18.12■□□□□ 0.49
CLK3-224ENST00000568605 USP21Q9UK80 565 aa18.12■□□□□ 0.49
CLK3-224ENST00000568605 ANKRD36BQ8N2N9 1353 aa18.12■□□□□ 0.49
CLK3-224ENST00000568605 CDK12Q9NYV4 1490 aaPredicted RBP18.12■□□□□ 0.49
CLK3-224ENST00000568605 FNBP4Q8N3X1 1017 aaPredicted RBP18.11■□□□□ 0.49
CLK3-224ENST00000568605 USP19O94966 1318 aa18.11■□□□□ 0.49
CLK3-224ENST00000568605 TTC21BQ7Z4L5 1316 aa18.1■□□□□ 0.49
CLK3-224ENST00000568605 POTEAQ6S8J7 498 aa18.1■□□□□ 0.49
CLK3-224ENST00000568605 ILDR2Q71H61 639 aa18.1■□□□□ 0.49
CLK3-224ENST00000568605 BCL9LQ86UU0 1499 aa18.09■□□□□ 0.49
CLK3-224ENST00000568605 ATRNO75882 1429 aa18.09■□□□□ 0.49
CLK3-224ENST00000568605 NUTM2GQ5VZR2 741 aa18.09■□□□□ 0.49
CLK3-224ENST00000568605 ABCC6O95255 1503 aa18.08■□□□□ 0.49
CLK3-224ENST00000568605 WNK3Q9BYP7 1800 aa18.08■□□□□ 0.48
CLK3-224ENST00000568605 HSPA5P11021 654 aaKnown RBP18.08■□□□□ 0.48
CLK3-224ENST00000568605 NLRP6P59044 892 aa18.08■□□□□ 0.48
CLK3-224ENST00000568605 SLC12A5Q9H2X9 1139 aa18.08■□□□□ 0.48
CLK3-224ENST00000568605 PRDM11Q9NQV5 511 aa18.08■□□□□ 0.48
CLK3-224ENST00000568605 TRPC5Q9UL62 973 aaPredicted RBP18.08■□□□□ 0.48
CLK3-224ENST00000568605 GLI3P10071 1580 aa18.07■□□□□ 0.48
CLK3-224ENST00000568605 COL18A1P39060 1754 aa18.07■□□□□ 0.48
CLK3-224ENST00000568605 CPDO75976 1380 aa18.06■□□□□ 0.48
CLK3-224ENST00000568605 KIAA0232Q92628 1395 aa18.06■□□□□ 0.48
CLK3-224ENST00000568605 FAM208AQ9UK61 1670 aaKnown RBP18.06■□□□□ 0.48
CLK3-224ENST00000568605 BRWD3Q6RI45 1802 aa18.06■□□□□ 0.48
CLK3-224ENST00000568605 NFAT5O94916 1531 aa18.06■□□□□ 0.48
CLK3-224ENST00000568605 RXRBP28702 533 aa18.05■□□□□ 0.48
CLK3-224ENST00000568605 UNC5CLQ8IV45 518 aa18.05■□□□□ 0.48
CLK3-224ENST00000568605 QTRT2Q9H974 415 aaKnown RBP18.05■□□□□ 0.48
CLK3-224ENST00000568605 USP31Q70CQ4 1352 aa18.04■□□□□ 0.48
CLK3-224ENST00000568605 RBM6P78332 1123 aaKnown RBP18.04■□□□□ 0.48
CLK3-224ENST00000568605 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.03■□□□□ 0.48
CLK3-224ENST00000568605 KCNH5Q8NCM2 988 aa18.03■□□□□ 0.48
CLK3-224ENST00000568605 OVOS2A0A0J9YW53 1432 aa18.03■□□□□ 0.48
CLK3-224ENST00000568605 OVOS2Q6IE36 1432 aa18.03■□□□□ 0.48
CLK3-224ENST00000568605 GCP02774 474 aa18.02■□□□□ 0.48
CLK3-224ENST00000568605 RGS12O14924 1447 aa18.01■□□□□ 0.47
CLK3-224ENST00000568605 ZC3H6P61129 1189 aaKnown RBP18.01■□□□□ 0.47
CLK3-224ENST00000568605 POLR3GLQ9BT43 218 aa18.01■□□□□ 0.47
CLK3-224ENST00000568605 BTG4Q9NY30 223 aa18.01■□□□□ 0.47
CLK3-224ENST00000568605 FAM83GA6ND36 823 aa18■□□□□ 0.47
CLK3-224ENST00000568605 MAP2P11137 1827 aaKnown RBP18■□□□□ 0.47
CLK3-224ENST00000568605 CAMTA1Q9Y6Y1 1673 aa17.99■□□□□ 0.47
CLK3-224ENST00000568605 NME9Q86XW9 330 aa17.99■□□□□ 0.47
CLK3-224ENST00000568605 NSD3Q9BZ95 1437 aa17.98■□□□□ 0.47
CLK3-224ENST00000568605 VPS72Q15906 364 aa17.98■□□□□ 0.47
CLK3-224ENST00000568605 CCDC9Q9Y3X0 531 aaKnown RBP17.98■□□□□ 0.47
CLK3-224ENST00000568605 COL5A2P05997 1499 aaPredicted RBP17.98■□□□□ 0.47
CLK3-224ENST00000568605 THSD7AQ9UPZ6 1657 aa17.98■□□□□ 0.47
CLK3-224ENST00000568605 AATKQ6ZMQ8 1374 aa17.97■□□□□ 0.47
CLK3-224ENST00000568605 SOCS7O14512 581 aa17.97■□□□□ 0.47
CLK3-224ENST00000568605 CHRNA2Q15822 529 aa17.97■□□□□ 0.47
CLK3-224ENST00000568605 GJD4Q96KN9 370 aaPredicted RBP17.97■□□□□ 0.47
CLK3-224ENST00000568605 PARP4Q9UKK3 1724 aaKnown RBP17.96■□□□□ 0.47
CLK3-224ENST00000568605 COG3Q96JB2 828 aa17.96■□□□□ 0.47
CLK3-224ENST00000568605 ZBTB7CA1YPR0 619 aa17.95■□□□□ 0.46
CLK3-224ENST00000568605 SOX12O15370 315 aa17.95■□□□□ 0.46
CLK3-224ENST00000568605 RGPD2P0DJD1 1756 aa17.92■□□□□ 0.46
CLK3-224ENST00000568605 EVA1CP58658 441 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms