RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 LRRC59Q96AG4 307 aaKnown RBP17.42■□□□□ 0.38
SF3B3-206ENST00000565990 COL16A1Q07092 1604 aaPredicted RBP17.41■□□□□ 0.38
SF3B3-206ENST00000565990 PER1O15534 1290 aaPredicted RBP17.41■□□□□ 0.38
SF3B3-206ENST00000565990 SPATA31A3Q5VYP0 1347 aa17.41■□□□□ 0.38
SF3B3-206ENST00000565990 HSPA1LP34931 641 aa17.4■□□□□ 0.38
SF3B3-206ENST00000565990 XPCQ01831 940 aaPredicted RBP17.4■□□□□ 0.38
SF3B3-206ENST00000565990 TTC21BQ7Z4L5 1316 aa17.4■□□□□ 0.38
SF3B3-206ENST00000565990 NRKQ7Z2Y5 1582 aa17.39■□□□□ 0.37
SF3B3-206ENST00000565990 ALS2Q96Q42 1657 aa17.39■□□□□ 0.37
SF3B3-206ENST00000565990 EDC4Q6P2E9 1401 aaKnown RBP17.38■□□□□ 0.37
SF3B3-206ENST00000565990 CENPBP07199 599 aaPredicted RBP17.38■□□□□ 0.37
SF3B3-206ENST00000565990 TTC21AQ8NDW8 1320 aa17.38■□□□□ 0.37
SF3B3-206ENST00000565990 PELP1Q8IZL8 1130 aaKnown RBP17.36■□□□□ 0.37
SF3B3-206ENST00000565990 FYB1O15117 783 aa17.35■□□□□ 0.37
SF3B3-206ENST00000565990 PAK3O75914 559 aaPredicted RBP17.35■□□□□ 0.37
SF3B3-206ENST00000565990 TNS3Q68CZ2 1445 aa17.35■□□□□ 0.37
SF3B3-206ENST00000565990 USP31Q70CQ4 1352 aa17.34■□□□□ 0.37
SF3B3-206ENST00000565990 ABTB2Q8N961 1025 aa17.34■□□□□ 0.37
SF3B3-206ENST00000565990 COL22A1Q8NFW1 1626 aaPredicted RBP17.33■□□□□ 0.37
SF3B3-206ENST00000565990 ARHGEF10O15013 1369 aa17.33■□□□□ 0.36
SF3B3-206ENST00000565990 DDX10Q13206 875 aaKnown RBP17.33■□□□□ 0.36
SF3B3-206ENST00000565990 PIK3C2AO00443 1686 aa17.32■□□□□ 0.36
SF3B3-206ENST00000565990 NSD3Q9BZ95 1437 aa17.32■□□□□ 0.36
SF3B3-206ENST00000565990 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.32■□□□□ 0.36
SF3B3-206ENST00000565990 SHPRHQ149N8 1683 aa17.32■□□□□ 0.36
SF3B3-206ENST00000565990 USP54Q70EL1 1684 aa17.32■□□□□ 0.36
SF3B3-206ENST00000565990 PNPLA6Q8IY17 1366 aa17.31■□□□□ 0.36
SF3B3-206ENST00000565990 JCADQ9P266 1359 aa17.31■□□□□ 0.36
SF3B3-206ENST00000565990 MARF1Q9Y4F3 1742 aaKnown RBP17.31■□□□□ 0.36
SF3B3-206ENST00000565990 AMER1Q5JTC6 1135 aaPredicted RBP17.31■□□□□ 0.36
SF3B3-206ENST00000565990 NLRP13Q86W25 1043 aa17.31■□□□□ 0.36
SF3B3-206ENST00000565990 NME9Q86XW9 330 aa17.31■□□□□ 0.36
SF3B3-206ENST00000565990 KNSTRNQ9Y448 316 aa17.31■□□□□ 0.36
SF3B3-206ENST00000565990 ILDR1Q86SU0 546 aaPredicted RBP17.3■□□□□ 0.36
SF3B3-206ENST00000565990 KIF20BQ96Q89 1820 aa17.3■□□□□ 0.36
SF3B3-206ENST00000565990 NPC1L1Q9UHC9 1359 aa17.29■□□□□ 0.36
SF3B3-206ENST00000565990 CGNL1Q0VF96 1302 aa17.29■□□□□ 0.36
SF3B3-206ENST00000565990 NLRP6P59044 892 aa17.29■□□□□ 0.36
SF3B3-206ENST00000565990 ZRANB1Q9UGI0 708 aa17.29■□□□□ 0.36
SF3B3-206ENST00000565990 CRYBG1Q9Y4K1 1723 aa17.29■□□□□ 0.36
SF3B3-206ENST00000565990 LMOD2Q6P5Q4 547 aa17.28■□□□□ 0.36
SF3B3-206ENST00000565990 USP19O94966 1318 aa17.27■□□□□ 0.36
SF3B3-206ENST00000565990 SPATA31A6Q5VVP1 1343 aa17.27■□□□□ 0.36
SF3B3-206ENST00000565990 MED1Q15648 1581 aaPredicted RBP17.27■□□□□ 0.35
SF3B3-206ENST00000565990 NUTM2GQ5VZR2 741 aa17.26■□□□□ 0.35
SF3B3-206ENST00000565990 GGNBP2Q9H3C7 697 aa17.26■□□□□ 0.35
SF3B3-206ENST00000565990 ANKRD26Q9UPS8 1709 aa17.26■□□□□ 0.35
SF3B3-206ENST00000565990 NSD2O96028 1365 aa17.26■□□□□ 0.35
SF3B3-206ENST00000565990 OVOS2A0A0J9YW53 1432 aa17.25■□□□□ 0.35
SF3B3-206ENST00000565990 OVOS2Q6IE36 1432 aa17.25■□□□□ 0.35
SF3B3-206ENST00000565990 GCP02774 474 aa17.24■□□□□ 0.35
SF3B3-206ENST00000565990 KCNH5Q8NCM2 988 aa17.24■□□□□ 0.35
SF3B3-206ENST00000565990 CABLES1Q8TDN4 633 aa17.24■□□□□ 0.35
SF3B3-206ENST00000565990 COG3Q96JB2 828 aa17.24■□□□□ 0.35
SF3B3-206ENST00000565990 SLIT3O75094 1523 aa17.24■□□□□ 0.35
SF3B3-206ENST00000565990 ABCA3Q99758 1704 aa17.23■□□□□ 0.35
SF3B3-206ENST00000565990 PHRF1Q9P1Y6 1649 aaKnown RBP17.22■□□□□ 0.35
SF3B3-206ENST00000565990 MAP2P11137 1827 aaKnown RBP17.2■□□□□ 0.34
SF3B3-206ENST00000565990 CC2D1BQ5T0F9 858 aaKnown RBP17.19■□□□□ 0.34
SF3B3-206ENST00000565990 NFAT5O94916 1531 aa17.19■□□□□ 0.34
SF3B3-206ENST00000565990 CPDO75976 1380 aa17.18■□□□□ 0.34
SF3B3-206ENST00000565990 AATKQ6ZMQ8 1374 aa17.18■□□□□ 0.34
SF3B3-206ENST00000565990 MORC1Q86VD1 984 aa17.18■□□□□ 0.34
SF3B3-206ENST00000565990 ARHGEF25Q86VW2 580 aa17.18■□□□□ 0.34
SF3B3-206ENST00000565990 FAM83GA6ND36 823 aa17.17■□□□□ 0.34
SF3B3-206ENST00000565990 COL18A1P39060 1754 aa17.16■□□□□ 0.34
SF3B3-206ENST00000565990 NUTM2BA6NNL0 878 aaPredicted RBP17.16■□□□□ 0.34
SF3B3-206ENST00000565990 NUTM2EB1AL46 878 aaPredicted RBP17.16■□□□□ 0.34
SF3B3-206ENST00000565990 FBLN1P23142 703 aa17.16■□□□□ 0.34
SF3B3-206ENST00000565990 NUTM2AQ8IVF1 878 aaPredicted RBP17.16■□□□□ 0.34
SF3B3-206ENST00000565990 LRP6O75581 1613 aa17.16■□□□□ 0.34
SF3B3-206ENST00000565990 ZC3H6P61129 1189 aaKnown RBP17.15■□□□□ 0.34
SF3B3-206ENST00000565990 LTN1O94822 1766 aa17.15■□□□□ 0.34
SF3B3-206ENST00000565990 PLEKHG5O94827 1062 aa17.14■□□□□ 0.33
SF3B3-206ENST00000565990 HAP1P54257 671 aaPredicted RBP17.14■□□□□ 0.33
SF3B3-206ENST00000565990 RALBP1Q15311 655 aa17.14■□□□□ 0.33
SF3B3-206ENST00000565990 POLKQ9UBT6 870 aa17.14■□□□□ 0.33
SF3B3-206ENST00000565990 PARD3Q8TEW0 1356 aa17.14■□□□□ 0.33
SF3B3-206ENST00000565990 KIAA0232Q92628 1395 aa17.14■□□□□ 0.33
SF3B3-206ENST00000565990 ADAMTS2O95450 1211 aa17.13■□□□□ 0.33
SF3B3-206ENST00000565990 FNBP4Q8N3X1 1017 aaPredicted RBP17.12■□□□□ 0.33
SF3B3-206ENST00000565990 MAP3K19Q56UN5 1328 aa17.12■□□□□ 0.33
SF3B3-206ENST00000565990 KIF24Q5T7B8 1368 aa17.12■□□□□ 0.33
SF3B3-206ENST00000565990 COL14A1Q05707 1796 aaKnown RBP17.12■□□□□ 0.33
SF3B3-206ENST00000565990 RGPD5Q99666 1765 aa17.11■□□□□ 0.33
SF3B3-206ENST00000565990 IP6K1Q92551 441 aa17.11■□□□□ 0.33
SF3B3-206ENST00000565990 PRKRIP1Q9H875 184 aaPredicted RBP17.11■□□□□ 0.33
SF3B3-206ENST00000565990 AXIN2Q9Y2T1 843 aa17.11■□□□□ 0.33
SF3B3-206ENST00000565990 LMO7Q8WWI1 1683 aa17.1■□□□□ 0.33
SF3B3-206ENST00000565990 SOX12O15370 315 aa17.1■□□□□ 0.33
SF3B3-206ENST00000565990 TNNT2P45379 298 aaPredicted RBP17.1■□□□□ 0.33
SF3B3-206ENST00000565990 RRS1Q15050 365 aaKnown RBP17.1■□□□□ 0.33
SF3B3-206ENST00000565990 PRDM11Q9NQV5 511 aa17.1■□□□□ 0.33
SF3B3-206ENST00000565990 ABCC6O95255 1503 aa17.1■□□□□ 0.33
SF3B3-206ENST00000565990 PPP2R1AP30153 589 aa17.09■□□□□ 0.33
SF3B3-206ENST00000565990 SLIT2O94813 1529 aa17.09■□□□□ 0.33
SF3B3-206ENST00000565990 NWD2Q9ULI1 1742 aa17.09■□□□□ 0.33
SF3B3-206ENST00000565990 PEAK1Q9H792 1746 aa17.08■□□□□ 0.32
SF3B3-206ENST00000565990 CAMTA1Q9Y6Y1 1673 aa17.08■□□□□ 0.32
SF3B3-206ENST00000565990 SMG6Q86US8 1419 aaKnown RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms