RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 NRKQ7Z2Y5 1582 aa13.04□□□□□ -0.32
VPS35-206ENST00000565228 PSME1Q06323 249 aa13.04□□□□□ -0.32
VPS35-206ENST00000565228 NGDNQ8NEJ9 315 aaKnown RBP13.04□□□□□ -0.32
VPS35-206ENST00000565228 SLC12A5Q9H2X9 1139 aa13.04□□□□□ -0.32
VPS35-206ENST00000565228 SPATA31A6Q5VVP1 1343 aa13.04□□□□□ -0.32
VPS35-206ENST00000565228 MYOM1P52179 1685 aa13.03□□□□□ -0.32
VPS35-206ENST00000565228 MON2Q7Z3U7 1717 aa13.03□□□□□ -0.32
VPS35-206ENST00000565228 PLEKHG5O94827 1062 aa13.03□□□□□ -0.32
VPS35-206ENST00000565228 USP6P35125 1406 aa13.03□□□□□ -0.32
VPS35-206ENST00000565228 NUTM2GQ5VZR2 741 aa13.02□□□□□ -0.33
VPS35-206ENST00000565228 POTEAQ6S8J7 498 aa13.02□□□□□ -0.33
VPS35-206ENST00000565228 PIK3C2AO00443 1686 aa13.02□□□□□ -0.33
VPS35-206ENST00000565228 ZRANB1Q9UGI0 708 aa13.01□□□□□ -0.33
VPS35-206ENST00000565228 PHRF1Q9P1Y6 1649 aaKnown RBP13□□□□□ -0.33
VPS35-206ENST00000565228 ATAD2Q6PL18 1390 aa13□□□□□ -0.33
VPS35-206ENST00000565228 ADAMTS2O95450 1211 aa13□□□□□ -0.33
VPS35-206ENST00000565228 A0A1W2PP64 1363 aa12.99□□□□□ -0.33
VPS35-206ENST00000565228 PAK3O75914 559 aaPredicted RBP12.98□□□□□ -0.33
VPS35-206ENST00000565228 LMOD2Q6P5Q4 547 aa12.98□□□□□ -0.33
VPS35-206ENST00000565228 PUS7Q96PZ0 661 aaKnown RBP12.98□□□□□ -0.33
VPS35-206ENST00000565228 TTC21BQ7Z4L5 1316 aa12.97□□□□□ -0.33
VPS35-206ENST00000565228 EIF4G2P78344 907 aaKnown RBP eCLIP12.97□□□□□ -0.33
VPS35-206ENST00000565228 C8orf37Q96NL8 207 aa12.97□□□□□ -0.33
VPS35-206ENST00000565228 ARHGEF10O15013 1369 aa12.96□□□□□ -0.33
VPS35-206ENST00000565228 USP19O94966 1318 aa12.96□□□□□ -0.33
VPS35-206ENST00000565228 TMF1P82094 1093 aa12.96□□□□□ -0.33
VPS35-206ENST00000565228 TMC1Q8TDI8 760 aa12.96□□□□□ -0.33
VPS35-206ENST00000565228 BCL9LQ86UU0 1499 aa12.96□□□□□ -0.34
VPS35-206ENST00000565228 AFF2P51816 1311 aa12.95□□□□□ -0.34
VPS35-206ENST00000565228 FAM83GA6ND36 823 aa12.95□□□□□ -0.34
VPS35-206ENST00000565228 NME9Q86XW9 330 aa12.95□□□□□ -0.34
VPS35-206ENST00000565228 CARD14Q9BXL6 1004 aa12.95□□□□□ -0.34
VPS35-206ENST00000565228 PLCH1Q4KWH8 1693 aa12.95□□□□□ -0.34
VPS35-206ENST00000565228 KTN1Q86UP2 1357 aaKnown RBP12.94□□□□□ -0.34
VPS35-206ENST00000565228 SLIT3O75094 1523 aa12.94□□□□□ -0.34
VPS35-206ENST00000565228 SLIT2O94813 1529 aa12.94□□□□□ -0.34
VPS35-206ENST00000565228 FNBP4Q8N3X1 1017 aaPredicted RBP12.94□□□□□ -0.34
VPS35-206ENST00000565228 ABTB2Q8N961 1025 aa12.94□□□□□ -0.34
VPS35-206ENST00000565228 NRAPQ86VF7 1730 aa12.93□□□□□ -0.34
VPS35-206ENST00000565228 USP54Q70EL1 1684 aa12.93□□□□□ -0.34
VPS35-206ENST00000565228 COL18A1P39060 1754 aa12.93□□□□□ -0.34
VPS35-206ENST00000565228 MEX3CQ5U5Q3 659 aaKnown RBP12.92□□□□□ -0.34
VPS35-206ENST00000565228 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.92□□□□□ -0.34
VPS35-206ENST00000565228 ANKRD36BQ8N2N9 1353 aa12.92□□□□□ -0.34
VPS35-206ENST00000565228 KIF7Q2M1P5 1343 aa12.91□□□□□ -0.34
VPS35-206ENST00000565228 FBLN1P23142 703 aa12.91□□□□□ -0.34
VPS35-206ENST00000565228 ZNF692Q9BU19 519 aaPredicted RBP12.91□□□□□ -0.34
VPS35-206ENST00000565228 LMO7Q8WWI1 1683 aa12.91□□□□□ -0.34
VPS35-206ENST00000565228 NFAT5O94916 1531 aa12.91□□□□□ -0.34
VPS35-206ENST00000565228 KIAA0232Q92628 1395 aa12.91□□□□□ -0.34
VPS35-206ENST00000565228 OVOS2A0A0J9YW53 1432 aa12.9□□□□□ -0.34
VPS35-206ENST00000565228 ATRNO75882 1429 aa12.9□□□□□ -0.34
VPS35-206ENST00000565228 OVOS2Q6IE36 1432 aa12.9□□□□□ -0.34
VPS35-206ENST00000565228 EDC4Q6P2E9 1401 aaKnown RBP12.9□□□□□ -0.34
VPS35-206ENST00000565228 ZC3H6P61129 1189 aaKnown RBP12.9□□□□□ -0.34
VPS35-206ENST00000565228 CHRNA2Q15822 529 aa12.9□□□□□ -0.34
VPS35-206ENST00000565228 NGLY1Q96IV0 654 aa12.9□□□□□ -0.34
VPS35-206ENST00000565228 BRD4O60885 1362 aaPredicted RBP12.9□□□□□ -0.34
VPS35-206ENST00000565228 USP31Q70CQ4 1352 aa12.9□□□□□ -0.34
VPS35-206ENST00000565228 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.9□□□□□ -0.34
VPS35-206ENST00000565228 CAMTA1Q9Y6Y1 1673 aa12.89□□□□□ -0.35
VPS35-206ENST00000565228 RGPD5Q99666 1765 aa12.89□□□□□ -0.35
VPS35-206ENST00000565228 GCP02774 474 aa12.89□□□□□ -0.35
VPS35-206ENST00000565228 NLRP6P59044 892 aa12.89□□□□□ -0.35
VPS35-206ENST00000565228 NINLQ9Y2I6 1382 aa12.89□□□□□ -0.35
VPS35-206ENST00000565228 GLI3P10071 1580 aa12.89□□□□□ -0.35
VPS35-206ENST00000565228 COL14A1Q05707 1796 aaKnown RBP12.89□□□□□ -0.35
VPS35-206ENST00000565228 WASHC2AQ641Q2 1341 aa12.88□□□□□ -0.35
VPS35-206ENST00000565228 TTC21AQ8NDW8 1320 aa12.88□□□□□ -0.35
VPS35-206ENST00000565228 USP21Q9UK80 565 aa12.88□□□□□ -0.35
VPS35-206ENST00000565228 NWD2Q9ULI1 1742 aa12.88□□□□□ -0.35
VPS35-206ENST00000565228 FYB1O15117 783 aa12.87□□□□□ -0.35
VPS35-206ENST00000565228 HDGFL2Q7Z4V5 671 aaPredicted RBP12.87□□□□□ -0.35
VPS35-206ENST00000565228 NLRP13Q86W25 1043 aa12.87□□□□□ -0.35
VPS35-206ENST00000565228 POLR3GLQ9BT43 218 aa12.87□□□□□ -0.35
VPS35-206ENST00000565228 QTRT2Q9H974 415 aaKnown RBP12.87□□□□□ -0.35
VPS35-206ENST00000565228 AXIN2Q9Y2T1 843 aa12.87□□□□□ -0.35
VPS35-206ENST00000565228 KIF20BQ96Q89 1820 aa12.87□□□□□ -0.35
VPS35-206ENST00000565228 NSD3Q9BZ95 1437 aa12.87□□□□□ -0.35
VPS35-206ENST00000565228 CPDO75976 1380 aa12.86□□□□□ -0.35
VPS35-206ENST00000565228 TERF2IPQ9NYB0 399 aa12.86□□□□□ -0.35
VPS35-206ENST00000565228 SOX12O15370 315 aa12.85□□□□□ -0.35
VPS35-206ENST00000565228 SLC24A1O60721 1099 aa12.85□□□□□ -0.35
VPS35-206ENST00000565228 ZNF772Q68DY9 489 aaPredicted RBP12.85□□□□□ -0.35
VPS35-206ENST00000565228 UNC5CLQ8IV45 518 aa12.85□□□□□ -0.35
VPS35-206ENST00000565228 UPF1Q92900 1129 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS35-206ENST00000565228 GGNBP2Q9H3C7 697 aa12.85□□□□□ -0.35
VPS35-206ENST00000565228 PANK3Q9H999 370 aa12.85□□□□□ -0.35
VPS35-206ENST00000565228 BTG4Q9NY30 223 aa12.85□□□□□ -0.35
VPS35-206ENST00000565228 LTN1O94822 1766 aa12.84□□□□□ -0.35
VPS35-206ENST00000565228 CCDC7Q96M83 1385 aa12.84□□□□□ -0.35
VPS35-206ENST00000565228 HAP1P54257 671 aaPredicted RBP12.84□□□□□ -0.35
VPS35-206ENST00000565228 ARHGEF25Q86VW2 580 aa12.84□□□□□ -0.35
VPS35-206ENST00000565228 PRDM11Q9NQV5 511 aa12.84□□□□□ -0.35
VPS35-206ENST00000565228 RGS12O14924 1447 aa12.84□□□□□ -0.35
VPS35-206ENST00000565228 CDCA8Q53HL2 280 aa12.83□□□□□ -0.36
VPS35-206ENST00000565228 PEAK1Q9H792 1746 aa12.82□□□□□ -0.36
VPS35-206ENST00000565228 BRWD3Q6RI45 1802 aa12.82□□□□□ -0.36
VPS35-206ENST00000565228 COL5A2P05997 1499 aaPredicted RBP12.81□□□□□ -0.36
VPS35-206ENST00000565228 PER1O15534 1290 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms