RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 ANKRD26Q9UPS8 1709 aa17.39■□□□□ 0.37
CLK3-214ENST00000564096 NPHP3Q7Z494 1330 aa17.39■□□□□ 0.37
CLK3-214ENST00000564096 CCER2I3L3R5 266 aa17.38■□□□□ 0.37
CLK3-214ENST00000564096 SOCS7O14512 581 aa17.38■□□□□ 0.37
CLK3-214ENST00000564096 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.38■□□□□ 0.37
CLK3-214ENST00000564096 ORAI2Q96SN7 254 aa17.38■□□□□ 0.37
CLK3-214ENST00000564096 SLAIN2Q9P270 581 aa17.38■□□□□ 0.37
CLK3-214ENST00000564096 TTC21BQ7Z4L5 1316 aa17.38■□□□□ 0.37
CLK3-214ENST00000564096 SSH2Q76I76 1423 aa17.38■□□□□ 0.37
CLK3-214ENST00000564096 PSME1Q06323 249 aa17.37■□□□□ 0.37
CLK3-214ENST00000564096 MORC1Q86VD1 984 aa17.37■□□□□ 0.37
CLK3-214ENST00000564096 ILDR2Q71H61 639 aa17.35■□□□□ 0.37
CLK3-214ENST00000564096 NLRP13Q86W25 1043 aa17.35■□□□□ 0.37
CLK3-214ENST00000564096 COG3Q96JB2 828 aa17.35■□□□□ 0.37
CLK3-214ENST00000564096 FYB1O15117 783 aa17.34■□□□□ 0.37
CLK3-214ENST00000564096 BRINP3Q76B58 766 aa17.34■□□□□ 0.37
CLK3-214ENST00000564096 GGNBP2Q9H3C7 697 aa17.34■□□□□ 0.37
CLK3-214ENST00000564096 OVOS2A0A0J9YW53 1432 aa17.33■□□□□ 0.36
CLK3-214ENST00000564096 OVOS2Q6IE36 1432 aa17.33■□□□□ 0.36
CLK3-214ENST00000564096 FOXO3O43524 673 aa17.33■□□□□ 0.36
CLK3-214ENST00000564096 NME9Q86XW9 330 aa17.33■□□□□ 0.36
CLK3-214ENST00000564096 PIK3C2AO00443 1686 aa17.32■□□□□ 0.36
CLK3-214ENST00000564096 SBNO1A3KN83 1393 aa17.32■□□□□ 0.36
CLK3-214ENST00000564096 USP31Q70CQ4 1352 aa17.32■□□□□ 0.36
CLK3-214ENST00000564096 SCAF1Q9H7N4 1312 aaKnown RBP17.32■□□□□ 0.36
CLK3-214ENST00000564096 TOM1O60784 492 aa17.32■□□□□ 0.36
CLK3-214ENST00000564096 PAK3O75914 559 aaPredicted RBP17.32■□□□□ 0.36
CLK3-214ENST00000564096 CERKQ8TCT0 537 aa17.32■□□□□ 0.36
CLK3-214ENST00000564096 USP54Q70EL1 1684 aa17.32■□□□□ 0.36
CLK3-214ENST00000564096 TRPM3Q9HCF6 1732 aaPredicted RBP17.31■□□□□ 0.36
CLK3-214ENST00000564096 PXDNQ92626 1479 aa17.31■□□□□ 0.36
CLK3-214ENST00000564096 TNS3Q68CZ2 1445 aa17.3■□□□□ 0.36
CLK3-214ENST00000564096 NHSL1Q5SYE7 1610 aa17.3■□□□□ 0.36
CLK3-214ENST00000564096 KRT28Q7Z3Y7 464 aa17.3■□□□□ 0.36
CLK3-214ENST00000564096 ROBO1Q9Y6N7 1651 aa17.29■□□□□ 0.36
CLK3-214ENST00000564096 ARHGEF10O15013 1369 aa17.29■□□□□ 0.36
CLK3-214ENST00000564096 ABTB2Q8N961 1025 aa17.29■□□□□ 0.36
CLK3-214ENST00000564096 MRS2Q9HD23 443 aa17.29■□□□□ 0.36
CLK3-214ENST00000564096 AHDC1Q5TGY3 1603 aaPredicted RBP17.29■□□□□ 0.36
CLK3-214ENST00000564096 PPP2R1AP30153 589 aa17.28■□□□□ 0.36
CLK3-214ENST00000564096 AATKQ6ZMQ8 1374 aa17.28■□□□□ 0.36
CLK3-214ENST00000564096 XPCQ01831 940 aaPredicted RBP17.27■□□□□ 0.36
CLK3-214ENST00000564096 TNNT2P45379 298 aaPredicted RBP17.26■□□□□ 0.35
CLK3-214ENST00000564096 NLRP6P59044 892 aa17.26■□□□□ 0.35
CLK3-214ENST00000564096 ALS2Q96Q42 1657 aa17.26■□□□□ 0.35
CLK3-214ENST00000564096 SOS2Q07890 1332 aaPredicted RBP17.25■□□□□ 0.35
CLK3-214ENST00000564096 SMG6Q86US8 1419 aaKnown RBP17.25■□□□□ 0.35
CLK3-214ENST00000564096 UBAP1LF5GYI3 381 aa17.25■□□□□ 0.35
CLK3-214ENST00000564096 CFAP53Q96M91 514 aa17.25■□□□□ 0.35
CLK3-214ENST00000564096 MED1Q15648 1581 aaPredicted RBP17.24■□□□□ 0.35
CLK3-214ENST00000564096 LMOD2Q6P5Q4 547 aa17.24■□□□□ 0.35
CLK3-214ENST00000564096 CDK12Q9NYV4 1490 aaPredicted RBP17.23■□□□□ 0.35
CLK3-214ENST00000564096 SPATA31A3Q5VYP0 1347 aa17.22■□□□□ 0.35
CLK3-214ENST00000564096 SLIT3O75094 1523 aa17.22■□□□□ 0.35
CLK3-214ENST00000564096 KCNH5Q8NCM2 988 aa17.22■□□□□ 0.35
CLK3-214ENST00000564096 ZRANB1Q9UGI0 708 aa17.22■□□□□ 0.35
CLK3-214ENST00000564096 USP19O94966 1318 aa17.21■□□□□ 0.35
CLK3-214ENST00000564096 DDX17Q92841 729 aaKnown RBP17.21■□□□□ 0.35
CLK3-214ENST00000564096 NUTM2GQ5VZR2 741 aa17.2■□□□□ 0.34
CLK3-214ENST00000564096 MARF1Q9Y4F3 1742 aaKnown RBP17.2■□□□□ 0.34
CLK3-214ENST00000564096 RTL1A6NKG5 1358 aa17.19■□□□□ 0.34
CLK3-214ENST00000564096 KIF24Q5T7B8 1368 aa17.19■□□□□ 0.34
CLK3-214ENST00000564096 MTHFSP49914 203 aa17.19■□□□□ 0.34
CLK3-214ENST00000564096 PIP4K2BP78356 416 aa17.19■□□□□ 0.34
CLK3-214ENST00000564096 NFAT5O94916 1531 aa17.18■□□□□ 0.34
CLK3-214ENST00000564096 PHLPP1O60346 1717 aa17.18■□□□□ 0.34
CLK3-214ENST00000564096 FLT4P35916 1363 aa17.17■□□□□ 0.34
CLK3-214ENST00000564096 SOX12O15370 315 aa17.17■□□□□ 0.34
CLK3-214ENST00000564096 WDR43Q15061 677 aaKnown RBP eCLIP17.17■□□□□ 0.34
CLK3-214ENST00000564096 PHRF1Q9P1Y6 1649 aaKnown RBP17.17■□□□□ 0.34
CLK3-214ENST00000564096 LRRC59Q96AG4 307 aaKnown RBP17.16■□□□□ 0.34
CLK3-214ENST00000564096 POLKQ9UBT6 870 aa17.16■□□□□ 0.34
CLK3-214ENST00000564096 COL16A1Q07092 1604 aaPredicted RBP17.16■□□□□ 0.34
CLK3-214ENST00000564096 PPM1GO15355 546 aaPredicted RBP17.15■□□□□ 0.34
CLK3-214ENST00000564096 RRS1Q15050 365 aaKnown RBP17.15■□□□□ 0.34
CLK3-214ENST00000564096 CCDC184Q52MB2 194 aa17.15■□□□□ 0.34
CLK3-214ENST00000564096 EMILIN1Q9Y6C2 1016 aa17.15■□□□□ 0.34
CLK3-214ENST00000564096 INSRP06213 1382 aa17.15■□□□□ 0.34
CLK3-214ENST00000564096 PNPLA6Q8IY17 1366 aa17.15■□□□□ 0.34
CLK3-214ENST00000564096 COL3A1P02461 1466 aaPredicted RBP17.14■□□□□ 0.33
CLK3-214ENST00000564096 NUDCQ9Y266 331 aa17.14■□□□□ 0.33
CLK3-214ENST00000564096 ABCC6O95255 1503 aa17.14■□□□□ 0.33
CLK3-214ENST00000564096 MAP3K19Q56UN5 1328 aa17.14■□□□□ 0.33
CLK3-214ENST00000564096 CRYBG1Q9Y4K1 1723 aa17.13■□□□□ 0.33
CLK3-214ENST00000564096 GCP02774 474 aa17.13■□□□□ 0.33
CLK3-214ENST00000564096 ADRA2BP18089 450 aa17.13■□□□□ 0.33
CLK3-214ENST00000564096 AMPHP49418 695 aa17.13■□□□□ 0.33
CLK3-214ENST00000564096 HAP1P54257 671 aaPredicted RBP17.13■□□□□ 0.33
CLK3-214ENST00000564096 COL22A1Q8NFW1 1626 aaPredicted RBP17.13■□□□□ 0.33
CLK3-214ENST00000564096 FAM9BQ8IZU0 186 aa17.12■□□□□ 0.33
CLK3-214ENST00000564096 ABCA3Q99758 1704 aa17.11■□□□□ 0.33
CLK3-214ENST00000564096 DIAPH1O60610 1272 aaKnown RBP17.11■□□□□ 0.33
CLK3-214ENST00000564096 PNISRQ8TF01 805 aaKnown RBP17.11■□□□□ 0.33
CLK3-214ENST00000564096 CPDO75976 1380 aa17.1■□□□□ 0.33
CLK3-214ENST00000564096 BLMP54132 1417 aaPredicted RBP17.1■□□□□ 0.33
CLK3-214ENST00000564096 SHPRHQ149N8 1683 aa17.1■□□□□ 0.33
CLK3-214ENST00000564096 PEAK1Q9H792 1746 aa17.1■□□□□ 0.33
CLK3-214ENST00000564096 LTN1O94822 1766 aa17.1■□□□□ 0.33
CLK3-214ENST00000564096 MAP2P11137 1827 aaKnown RBP17.1■□□□□ 0.33
CLK3-214ENST00000564096 PLEKHG5O94827 1062 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms