RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 ONECUT3O60422 494 aaPredicted RBP18.91■□□□□ 0.62
SF3B3-202ENST00000562722 HRCP23327 699 aa18.91■□□□□ 0.62
SF3B3-202ENST00000562722 ALS2Q96Q42 1657 aa18.9■□□□□ 0.62
SF3B3-202ENST00000562722 NUDT16Q96DE0 195 aaKnown RBP18.9■□□□□ 0.62
SF3B3-202ENST00000562722 PRDM11Q9NQV5 511 aa18.9■□□□□ 0.62
SF3B3-202ENST00000562722 COL14A1Q05707 1796 aaKnown RBP18.89■□□□□ 0.61
SF3B3-202ENST00000562722 ARHGEF28Q8N1W1 1705 aaKnown RBP18.88■□□□□ 0.61
SF3B3-202ENST00000562722 NRAPQ86VF7 1730 aa18.88■□□□□ 0.61
SF3B3-202ENST00000562722 ATP7BP35670 1465 aa18.87■□□□□ 0.61
SF3B3-202ENST00000562722 CDK19Q9BWU1 502 aa18.87■□□□□ 0.61
SF3B3-202ENST00000562722 ITSN1Q15811 1721 aa18.86■□□□□ 0.61
SF3B3-202ENST00000562722 NUTM2GQ5VZR2 741 aa18.85■□□□□ 0.61
SF3B3-202ENST00000562722 SPATA31A5Q5VU36 1347 aa18.84■□□□□ 0.61
SF3B3-202ENST00000562722 SPATA31A7Q8IWB4 1347 aa18.84■□□□□ 0.61
SF3B3-202ENST00000562722 BAG6P46379 1132 aa18.84■□□□□ 0.61
SF3B3-202ENST00000562722 SRCAPQ6ZRS2 3230 aa18.84■□□□□ 0.61
SF3B3-202ENST00000562722 KIAA0232Q92628 1395 aa18.83■□□□□ 0.61
SF3B3-202ENST00000562722 CHRNA2Q15822 529 aa18.83■□□□□ 0.6
SF3B3-202ENST00000562722 STRN4Q9NRL3 753 aa18.83■□□□□ 0.6
SF3B3-202ENST00000562722 ZC3H6P61129 1189 aaKnown RBP18.82■□□□□ 0.6
SF3B3-202ENST00000562722 ACEP12821 1306 aa18.81■□□□□ 0.6
SF3B3-202ENST00000562722 CRYBG1Q9Y4K1 1723 aa18.81■□□□□ 0.6
SF3B3-202ENST00000562722 FAM182BQ5T319 152 aa18.81■□□□□ 0.6
SF3B3-202ENST00000562722 CCDC61Q9Y6R9 512 aa18.81■□□□□ 0.6
SF3B3-202ENST00000562722 NBPF8Q3BBV2 869 aa18.8■□□□□ 0.6
SF3B3-202ENST00000562722 SRPK2P78362 688 aaKnown RBP18.79■□□□□ 0.6
SF3B3-202ENST00000562722 NBPF1Q3BBV0 1214 aa18.79■□□□□ 0.6
SF3B3-202ENST00000562722 EVA1CP58658 441 aa18.78■□□□□ 0.6
SF3B3-202ENST00000562722 ABTB2Q8N961 1025 aa18.78■□□□□ 0.6
SF3B3-202ENST00000562722 USP35Q9P2H5 1018 aa18.78■□□□□ 0.6
SF3B3-202ENST00000562722 POLR3AO14802 1390 aaPredicted RBP18.78■□□□□ 0.6
SF3B3-202ENST00000562722 PHRF1Q9P1Y6 1649 aaKnown RBP18.78■□□□□ 0.6
SF3B3-202ENST00000562722 KIAA1210Q9ULL0 1709 aa18.77■□□□□ 0.6
SF3B3-202ENST00000562722 SPATA31A1Q5TZJ5 1347 aa18.77■□□□□ 0.6
SF3B3-202ENST00000562722 TOPAZ1Q8N9V7 1692 aa18.77■□□□□ 0.6
SF3B3-202ENST00000562722 PSDA5PKW4 1024 aaPredicted RBP18.77■□□□□ 0.6
SF3B3-202ENST00000562722 EN1Q05925 392 aaPredicted RBP18.77■□□□□ 0.6
SF3B3-202ENST00000562722 PLEKHG3A1L390 1219 aa18.76■□□□□ 0.59
SF3B3-202ENST00000562722 CENPJQ9HC77 1338 aaPredicted RBP18.75■□□□□ 0.59
SF3B3-202ENST00000562722 THSD7AQ9UPZ6 1657 aa18.75■□□□□ 0.59
SF3B3-202ENST00000562722 PPIP5K1Q6PFW1 1433 aa18.74■□□□□ 0.59
SF3B3-202ENST00000562722 RGPD1P0DJD0 1748 aa18.74■□□□□ 0.59
SF3B3-202ENST00000562722 CABP2Q9NPB3 220 aa18.74■□□□□ 0.59
SF3B3-202ENST00000562722 SSH2Q76I76 1423 aa18.73■□□□□ 0.59
SF3B3-202ENST00000562722 ZBTB7CA1YPR0 619 aa18.72■□□□□ 0.59
SF3B3-202ENST00000562722 NRKQ7Z2Y5 1582 aa18.72■□□□□ 0.59
SF3B3-202ENST00000562722 PDE3BQ13370 1112 aa18.71■□□□□ 0.59
SF3B3-202ENST00000562722 FAM196AQ6ZSG2 479 aa18.71■□□□□ 0.59
SF3B3-202ENST00000562722 NLRP13Q86W25 1043 aa18.71■□□□□ 0.59
SF3B3-202ENST00000562722 TRIM37O94972 964 aa18.7■□□□□ 0.58
SF3B3-202ENST00000562722 LARP1Q6PKG0 1096 aaKnown RBP18.7■□□□□ 0.58
SF3B3-202ENST00000562722 USP19O94966 1318 aa18.7■□□□□ 0.58
SF3B3-202ENST00000562722 CPDO75976 1380 aa18.68■□□□□ 0.58
SF3B3-202ENST00000562722 GCP02774 474 aa18.68■□□□□ 0.58
SF3B3-202ENST00000562722 R3HDM1Q15032 1099 aaKnown RBP18.68■□□□□ 0.58
SF3B3-202ENST00000562722 EZH2Q15910 746 aaKnown RBP18.68■□□□□ 0.58
SF3B3-202ENST00000562722 BARGINQ6ZT62 677 aa18.68■□□□□ 0.58
SF3B3-202ENST00000562722 TCP11L2Q8N4U5 519 aa18.68■□□□□ 0.58
SF3B3-202ENST00000562722 LRP5O75197 1615 aa18.67■□□□□ 0.58
SF3B3-202ENST00000562722 DISP2A7MBM2 1401 aa18.67■□□□□ 0.58
SF3B3-202ENST00000562722 QRICH2Q9H0J4 1663 aa18.67■□□□□ 0.58
SF3B3-202ENST00000562722 CAMTA1Q9Y6Y1 1673 aa18.67■□□□□ 0.58
SF3B3-202ENST00000562722 APBA3O96018 575 aa18.67■□□□□ 0.58
SF3B3-202ENST00000562722 L3MBTL2Q969R5 705 aa18.67■□□□□ 0.58
SF3B3-202ENST00000562722 CABP1Q9NZU7 370 aa18.67■□□□□ 0.58
SF3B3-202ENST00000562722 TNS1Q9HBL0 1735 aaKnown RBP18.66■□□□□ 0.58
SF3B3-202ENST00000562722 NLRP6P59044 892 aa18.66■□□□□ 0.58
SF3B3-202ENST00000562722 BRD4O60885 1362 aaPredicted RBP18.65■□□□□ 0.58
SF3B3-202ENST00000562722 EVC2Q86UK5 1308 aa18.64■□□□□ 0.57
SF3B3-202ENST00000562722 USP6P35125 1406 aa18.64■□□□□ 0.57
SF3B3-202ENST00000562722 LMO7Q8WWI1 1683 aa18.63■□□□□ 0.57
SF3B3-202ENST00000562722 NEUROD1Q13562 356 aa18.63■□□□□ 0.57
SF3B3-202ENST00000562722 CAMKK2Q96RR4 588 aa18.63■□□□□ 0.57
SF3B3-202ENST00000562722 THRAP3Q9Y2W1 955 aaKnown RBP18.63■□□□□ 0.57
SF3B3-202ENST00000562722 SIN3AQ96ST3 1273 aa18.62■□□□□ 0.57
SF3B3-202ENST00000562722 COL5A2P05997 1499 aaPredicted RBP18.62■□□□□ 0.57
SF3B3-202ENST00000562722 ROCK2O75116 1388 aaKnown RBP18.61■□□□□ 0.57
SF3B3-202ENST00000562722 PARD3Q8TEW0 1356 aa18.61■□□□□ 0.57
SF3B3-202ENST00000562722 CRB1P82279 1406 aa18.6■□□□□ 0.57
SF3B3-202ENST00000562722 AATKQ6ZMQ8 1374 aa18.58■□□□□ 0.57
SF3B3-202ENST00000562722 SOX12O15370 315 aa18.58■□□□□ 0.56
SF3B3-202ENST00000562722 TOM1L2Q6ZVM7 507 aa18.58■□□□□ 0.56
SF3B3-202ENST00000562722 TRPM1Q7Z4N2 1603 aa18.57■□□□□ 0.56
SF3B3-202ENST00000562722 NBPF14Q5TI25 921 aa18.57■□□□□ 0.56
SF3B3-202ENST00000562722 SLIT3O75094 1523 aa18.57■□□□□ 0.56
SF3B3-202ENST00000562722 PIK3C2AO00443 1686 aa18.55■□□□□ 0.56
SF3B3-202ENST00000562722 C11orf95C9JLR9 678 aaPredicted RBP18.55■□□□□ 0.56
SF3B3-202ENST00000562722 DDB1Q16531 1140 aa18.55■□□□□ 0.56
SF3B3-202ENST00000562722 ZNF692Q9BU19 519 aaPredicted RBP18.55■□□□□ 0.56
SF3B3-202ENST00000562722 PARP4Q9UKK3 1724 aaKnown RBP18.54■□□□□ 0.56
SF3B3-202ENST00000562722 TTC21BQ7Z4L5 1316 aa18.54■□□□□ 0.56
SF3B3-202ENST00000562722 CSB-PGBD3P0DP91 1061 aa18.54■□□□□ 0.56
SF3B3-202ENST00000562722 KCNH5Q8NCM2 988 aa18.54■□□□□ 0.56
SF3B3-202ENST00000562722 OVOS2A0A0G2JMS6 1433 aa18.54■□□□□ 0.56
SF3B3-202ENST00000562722 OVOS2A0A0J9YW53 1432 aa18.54■□□□□ 0.56
SF3B3-202ENST00000562722 OVOS2Q6IE36 1432 aa18.54■□□□□ 0.56
SF3B3-202ENST00000562722 CPSF1Q10570 1443 aaKnown RBP18.53■□□□□ 0.56
SF3B3-202ENST00000562722 AXIN2Q9Y2T1 843 aa18.52■□□□□ 0.56
SF3B3-202ENST00000562722 WDR17Q8IZU2 1322 aa18.51■□□□□ 0.55
SF3B3-202ENST00000562722 TTC21AQ8NDW8 1320 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms